Array 1 2933845-2935612 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012581.1 Pseudomonas aeruginosa strain PA_D16 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2933845 28 100.0 32 ............................ AAGAAGAGGGGCGCTGCCTGATTCAGGAGTGC 2933905 28 100.0 32 ............................ CCCTCAAGTCGAAGCGCTCCATCGAGCAGAAC 2933965 28 100.0 32 ............................ ACCAATGGACCAGCAATCGAACTCAAGAACGA 2934025 28 100.0 32 ............................ TGGCGGCATACCGTCGAGGACTGAAGCCTGAC 2934085 28 100.0 32 ............................ TTATCCATCGCTGCGCGCCCTCCTCGGCTCGT 2934145 28 100.0 32 ............................ ATGTCGCGTCGTCGATGTGCTTTGTGGGCATC 2934205 28 100.0 32 ............................ GGTGTCCCGGGCACCCTGCTGGACCTGTTCAC 2934265 28 100.0 32 ............................ TGGCCCGAACCCGCCTGCGCCTACAACGCGAT 2934325 28 100.0 32 ............................ CCACCATGTCGGCGGTGATCGTCACCGGCACC 2934385 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 2934445 28 100.0 32 ............................ AGATCACCGAGCGCTATTCGGAGCCGGCCGAA 2934505 28 100.0 32 ............................ TCTTCGCGTCCCTGGCCTTGGCTCGATACAGA 2934565 28 100.0 32 ............................ ACCGAATCCGCGACTCGTACCGAGTCGCAAAC 2934625 28 100.0 32 ............................ GGGTGGCGGAACCGACTGCCGAATATCACTCC 2934685 28 100.0 32 ............................ CTCTCCTGAGCGCTGAGGATGCAAGAGCCCGC 2934745 28 100.0 32 ............................ TTCCGCCAGTTGCCGAAGCGCCCGAAATAGAG 2934805 28 100.0 32 ............................ TGAACAACCCGGCGCTGCGCGACTATCTGCCG 2934865 28 100.0 32 ............................ GGCAAGCCATTGATCAGCAGGCCGGTATTCGG 2934925 28 100.0 32 ............................ TATGCCGCCCAGCGTGCCGCCCAGGGCGCCGC 2934985 28 100.0 32 ............................ ACGAACAGCGCTGCGAACTCGCCAAGGTCTGG 2935045 28 100.0 32 ............................ TATCGAAGAGTGATCTGCGCTGCTGTGGCGCA 2935105 28 100.0 32 ............................ ATGGTGCTGTGGGAGCGTGGCAGCGAGTCGCT 2935165 28 100.0 32 ............................ ATAGAGGATCAGATAGCGCCCGACATGCCCGG 2935225 28 100.0 32 ............................ TCGTAATCATTGAAGCCCCGGGCAAGCTGAAA 2935285 28 100.0 32 ............................ ATGGGGTCTACATCAGCGATGCGGCTCTGTCC 2935345 28 100.0 32 ............................ ACTTGCAGAAGCCCCAGGACTTGAAGCCACTG 2935405 28 96.4 32 C........................... ATCCGTCACCGGAATTTGCGCGTTGGCCGTGC 2935465 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 2935525 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 2935585 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2944695-2944127 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012581.1 Pseudomonas aeruginosa strain PA_D16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2944694 28 100.0 32 ............................ AGGTCGAGCAGCCGAACAAGTTCGGGTTGATC 2944634 28 100.0 32 ............................ ACGTCGAGAAAGTGCCGCCCTTCCTGTACGAA 2944574 28 100.0 32 ............................ CTGACGATCTGGCCGACCGGCTGAAGTCTGCC 2944514 28 100.0 32 ............................ AGCGCCTGGACAATGCGCAGCCCAGGCGCTGG 2944454 28 100.0 32 ............................ AGCATGGGAAACCCGTCAAGGCCCGGATACTG 2944394 28 100.0 32 ............................ TGAAGGCGTATCTCAAACACACCGAGTTTCAG 2944334 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 2944274 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 2944214 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 2944154 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTCTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //