Array 1 765-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_PESV01000006.1 Trueperella pyogenes strain Bu5 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 764 29 100.0 33 ............................. CGTAGTGAGGATTTGGATATAACTTTAGTTATA 702 29 100.0 32 ............................. ACGACTTCGCGGTTCTTCCCGTCAGCTCCAAC 641 29 100.0 32 ............................. GTCTGCTGCAGGAGAAAGTTCGCGGTTATACA 580 29 100.0 33 ............................. GGTAGGCGCAAAAAATTGGCGCTGTCAAATTGA 518 29 100.0 32 ............................. GGGCCGACGCCAGGATAATCCGGCCGCGATTT 457 29 100.0 32 ............................. CACGCTCGCCAAATCAGACCAACTCAACGCCG 396 29 96.6 32 ............................G TACCCCGTTCTCGCCGAGTTCGACAAATACGC 335 29 100.0 32 ............................. CCTCTAGAGATTATGAGTCCTTTGAGTTCGGC C [330] 273 29 100.0 32 ............................. GGCAGCCACGCTACGGTGTCGTTCTTTTCCCA 212 29 100.0 31 ............................. CCCACACCACACTACCGGTGGTGAGCATTGA 152 29 96.6 32 ............................G TCGCTGATCGTGGTGGCGCGCTCACCCTTGAT C [147] 90 29 100.0 32 ............................. GCTCCTCAAGCACAATATTCAGTGAGGCGGCC 29 27 93.1 0 ........-...........-........ | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.9 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTCTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCACAGACTTTGATGGTTTGACCCTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAAAAGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTGTCCAGATTTTTGATAGTTCGAGAATTGTAGATTACACGCGATGGTAGTGGATAGAGTGGATCCTGAGATATCCATTGGGCCATCGTCAGGTAAGGCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAGTGCTGGTCAGCAACA # Right flank : CGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3018-1520 **** Predicted by CRISPRDetect 2.4 *** >NZ_PESV01000009.1 Trueperella pyogenes strain Bu5 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3017 29 96.6 32 ............................T ACGCCGACTGGAACACCCGACCAGACGGCACA 2956 29 100.0 32 ............................. ATCAAGCTGGCCGCGCTGCAGGCTGACCATCT 2895 29 100.0 32 ............................. TTGCGCGGTGGCTACTGACACTTTGCCTTGTG C [2890] 2833 29 100.0 32 ............................. CGAGCGGGTATCGGGCGATCGTCGCCGACGAG 2772 29 96.6 33 ............................C CTATGGATAGTCTCCACCCGTGGGACAGCCAAC 2710 29 96.6 32 ............................C ATCTGTGAGTGTCTGAGCCGTTGATTCGGTGT 2649 29 100.0 32 ............................. TGCCGGTAAACTTTGCGTTGTCCTTGCCGTCA 2588 29 96.6 32 ............................C CGCCGCCACGATCGACGCCCTATCGGCCGACC 2527 29 100.0 31 ............................. TCCGAGAATCGAAGGGCTAACCGACCTAGAA 2467 29 96.6 32 ............................C ATCGTGGACGATATACCGGACGACGACCTCGA 2406 29 100.0 32 ............................. GCGACGGCTGGAAATTCGACGGCAATTCGATC C [2401] 2344 29 100.0 32 ............................. CCGCCCGGAGCGTACACGGTCTAGGAAAGTTT C [2339] 2282 29 96.6 32 ............................C CCGGCAAGCATTCCGGCGGGTACGCCTTCGGC C [2277] 2220 29 100.0 32 ............................. GCCTCGCGCCGGTATTGGCGGGACGAGGAAGA 2159 29 100.0 32 ............................. GCACAGCAGCGCACGAGTTGGCGGAGTATGAG 2098 29 96.6 32 ............................T TCTTCGACAGTCCAACGCTGTTGGCTGCGGCA 2037 29 100.0 32 ............................. CTGTCTTTCGCAAGCGTCACGGCTGCCACGAC 1976 29 100.0 32 ............................. ACTGCAGCTCACCGGCAGCCCCGCAGCCGCTG 1915 29 96.6 32 ............................T TGCCATGGCATGAGTTTTTTCCCTCGGATAGC 1854 29 100.0 32 ............................. CTGCCGCTCACCATCAGGATTAGCAATCACTA 1793 29 100.0 32 ............................. CTATGAGAGACCGAGAATTGAGTGACATAGAT 1732 29 96.6 32 ............................C ATCCAGCCCAGCACCAAGCACCATGCTGTGGA 1671 29 96.6 32 ............T................ GCGGTGAGCAGTAATGGGTCATTTTCATGACC 1610 29 96.6 32 ............T................ ATTTCCAACTGGCACGAGTGTTTACCAGCCAC 1549 29 89.7 0 ........T.................T.A | C [1524] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.1 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCG # Left flank : | # Right flank : GTGACGGTTGGAAAGTAGCCCGGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAGACTGCACTTCTTCTAAAACCTGCAAACTTGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATCGCCAGGCACCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCACGCTGATTCAAGTTCTTTGCGGAGGCGGCCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCGGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGATCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGATTTAGTCAAAGTC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //