Array 1 2325821-2324447 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009506.1 Methanosarcina siciliae T4/M chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 2325820 35 100.0 38 ................................... GATCATTTCTTCTTGGGAAGAAATAAGCTTTGACATCT 2325747 35 100.0 40 ................................... CTTCGCATTTGTTCTTCAAATACGATTTCGGATTCACGCT 2325672 35 100.0 38 ................................... CCATTGAACCACGGGGCAGGAATGTGGAATGTTCCGCT 2325599 35 100.0 42 ................................... TCTCTTCAATCTTGCAGGTTTGTATGTTATCCAACATTATCT 2325522 35 100.0 38 ................................... TTCTATAAAACTCAAGGCTACCTCTATTGTATCCTTCT 2325449 35 100.0 38 ................................... ATTCTCTTTCTCTAACCTGATCTCTATGTATTTTTTGA 2325376 35 94.3 37 .....G.T........................... TGATAAGAAACACGGCAAGCAACAATTTCATTCTGGA 2325304 35 94.3 43 .....G.T........................... CACAAATTCTTCCCCTGACATTCTTTCACTCCTTTTATATTGA 2325226 35 94.3 39 .....G.T........................... CAATAATCTATAATCATTTTGCCTCTCCTCTCCTTTTGA 2325152 35 94.3 41 .....G.T........................... GACTATGTTCTAAAATATCCATTATACCTATAAGACAGAGA 2325076 35 94.3 39 .....G.T........................... ATAAAATTGACTGCATCTTTCATTAATTCATCTCCATGA 2325002 35 94.3 39 .....G.T........................... CCTTTGTATTACGATACAATCCTATTCCTACTTCCAGGA 2324928 35 94.3 40 .....G.T........................... ATTGCCTGATTGATCCTGAACCCTTACATGCTGGACAGCT 2324853 35 100.0 38 ................................... TTCAAAATTCTTCCCGTGTCAAGCTGAGGCTTACCACT 2324780 35 100.0 41 ................................... CTGCTTCATTTCCAGGGAACCTGGATACGGCTTCCGACACT 2324704 35 100.0 40 ................................... TATTTTGGTCGTCTTCGACCAATGTTACGTTTTCCGGACT 2324629 35 97.1 39 ............A...................... TTATTTATTTCTTTAATAAAAGGAAGTATGGACAGTACT 2324555 35 100.0 39 ................................... ATACTCTCAACTTTTCCTCTAGAGAAAGTATGTCAAGCT 2324481 35 94.3 0 .................C............A.... | ========== ====== ====== ====== =================================== =========================================== ================== 19 35 97.4 39 AAAACAGCAACAGCCACTAAAACAAGGATTGAAAC # Left flank : GAAATGAATTTTGAAAAGCTTTCAGCAGATTCACGTGCAATTATATTATCCCAATTATCCAATAATGAGAAAACTGCAAAGTACGCCGCTAAAATATCATCAAAATTATAATAGAATTCCAACTATCATACAGTCACATAAAATATTATTTGTTTGATTTTGATTTTCATATTCGAAATTATTTAATAATTTGCTGAAAATCAAATTTGATACTTGCTGCTCACCCCCAAGTTCCTAAAGAATTTCATTCCAAAGTACATGTATGTTCACTACCAAAAAACTAATATCAATATCGGGCAGTGTAAAATGAAAAAGTTTATAACTTGCTGCTCCTTATATACTATCCAGTTATTTGTCGACCAGCAAATTTTGTTGACCAAAACAAAAACAGGTAAATTCCAAAGATTAGACAGTTAAAGTAAAAAATAAGCTGTTTGATACTGGTTTTAAGATTTGAGATTACTTAATAATTTGCTGAAAATAAGGGAAAACGACCCTCT # Right flank : TGCGGGTTTGATTTTTCCAGGAAGCTTAAAACTCCTGCTAACACTCCAGTTTATTCTTTGAAAGTTGGAGAATATCGGGTACTGCTTGCTGTTAGGGATTTGCAGCTTATTATCTTGGTCCTGGAAGCTGGAAATCGGAGCAAAGCATACAGAAAGTTTTGTAAAAACTTTTTTTACGGTCAGCAATCGGTTATTTAACTCACCTTTCAAAGATGAGTGATTTTCCGTTATCCTCTGGCTTTGTTTGTGTATGCCTAATAAAAGAATAATCCTGCCAATAACGATTTTGTTAATATGGCAGGTATTTTTCCATGTTTAGAAAAGAAAATAACGATGCTTGTTTTGTGTCCATTTCTTCCACAATAATTTTGCTTTTTTTGGACTCTTTTTCCTGAACTACCGCAATCTTGATCTCAGACAGTTTTTCAATGAGCTTTTTCAAAGAGAAACCGTACATTTTGGTCTCCCATGCCAGGTATCTGTAGAAAAGTAGGCCAGCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAACAGCAACAGCCACTAAAACAAGGATTGAAAC # Alternate repeat : AAAACGGTAACAGCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 2340663-2338844 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009506.1 Methanosarcina siciliae T4/M chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================ ================== 2340662 37 100.0 37 ..................................... TCTTCTGGGAAAACTTTTCCATGTGCCAGATATGGGA 2340588 37 100.0 37 ..................................... CTCTTTTTGTATTTTTTAAAAAACCAGTGTTTTCCAC 2340514 37 100.0 36 ..................................... CAGTATAGATCCGGTTATTCCTCTTATCTCTTGATT 2340441 37 100.0 36 ..................................... TTGTTTTCTCGAAAAATTTGGGATCTATATCTGCCA 2340368 37 100.0 34 ..................................... TTTTCCATTTTTTGCACTCCGTTTTTGTTTTTAC 2340297 37 100.0 36 ..................................... CTGACACTCTCATTCCCCTAGACACAAGTGTCTCTG 2340224 37 100.0 37 ..................................... CTTTATCAATGATATCAATCACGGTTAGACTTTTATT 2340150 37 100.0 36 ..................................... TAAATATAACTACATGAGCTAGTCCTTTGGTCAAAA 2340077 37 100.0 36 ..................................... TGGGTTTTCCATTCCTTCTTCCTTGAGATATACACG 2340004 37 100.0 36 ..................................... TTCATTTATTTTTAGCTTTAAAACCGAAGATAATTT 2339931 37 100.0 37 ..................................... AAATTTATTGTCTTCCTCTGCTTGTTTCAATCTCTCG 2339857 37 100.0 36 ..................................... TCTTGTAACCATCTTCCATTTCTTGCGTAATTATTC 2339784 37 100.0 38 ..................................... GTTTTTCTGCTTCGACAGGAACAACCGTGTGCCCCTTA 2339709 37 100.0 37 ..................................... ATCTCTCGATTCTTCTGGGTGATGATCAATCTTCCAG 2339635 37 100.0 37 ..................................... CTTATTATCAATTCTAGCAATCCTTTCCATCACCGAT 2339561 37 100.0 37 ..................................... TCAGTATCTATCTCTCTCGCAGAAATCTTTATTACAG 2339487 37 100.0 34 ..................................... TATCAAGCTGTTCATCAAGATTTTCTGATGACAA 2339416 37 100.0 34 ..................................... TCTTCTTGGCCAATTAAATCCATTTTGTTTCCGA 2339345 37 100.0 37 ..................................... ATATAGCCCTCCTTCACAGTCAGATCTTCAACCTCAA 2339271 37 100.0 34 ..................................... TAGAAAATATGCACAAACACTTGATACTTCAATG 2339200 37 100.0 37 ..................................... TTATAAACATCGCTATTATCCTCAACTGTTCATTCAA 2339126 37 100.0 34 ..................................... TTTCACAATAATTATAGAATTTATGCACTCTTCA 2339055 37 100.0 64 ..................................... GAATACATCCTTTTTGTACAGCTTTTTATAAATTTTGAGCAGTGATCCAAGTTTCGTGATGTCA 2338954 37 89.2 37 GA.....G.T........................... CCCCATTTCTGGGAATCTCTCCTTTTGGTACCCTGAT 2338880 37 89.2 0 GA.....G.T........................... | ========== ====== ====== ====== ===================================== ================================================================ ================== 25 37 99.1 37 CTAAAACAGCAACAGCCACTAAAACAAGGATTGAAAC # Left flank : TATCCGAATTCTTGAAGTTTGTATCCCCGTTTTCCTGAAGAATCACGCTTTTTTCTCAATTTGACCCATGAATTTTCAAAAAAACAACATCTACATAGAACATCATAAAAAACTATTTTGAAGTATTTCTAAAGAAAATTTGGATTTTTCTGAGGAGCCCGGATGAAAAATCCACCATGAGGCGGCGCTATGAACTTCGTATTAGAATTATAAATGTATCCCGGATACCCTACTTTACAAATGATTTTAAAGAAGTGTACAGATATGTACATTGTCAAAAAAATAATTTCGCTGCCAAGCAGTCGAAAATACAAAAGTTTATATGGTATCCATCCTTATATACTCCTTAGCTAATTGTCGATGGACAAATTTAGTTAACAAAAATGGAAGTAAGCAAATTTTAAATATTATACAGTTTAAGCAAAAAATAATTTGCTTGCTATTGTTTTTTAGATTTGGAATTATTTAATAATTTGCTGTAAATAAGGGAAAACGACCCT # Right flank : TAATATCCATAAACTCCACCTCCGTGGATAAAAACTGAAATCACGAAAAAGTATCGAGTCCTTTAATTCGGAAAAAACCCGAATTCTTCGCGGCTAAGTATATCAGGCTCTGTAGACGACTGGAAATTAAGAACCATTTATGGAGGTACCTGATATACAGAACCAGACTCTAGCCGAAATTCAACTGAAACTGTATAACAAAGCGAAGAGGAACCCGCAAAAACGGTTCCGGAAGCTTAAAAAACTGCTTTTGAAAGACGAGATCCTCTATACAGCCTGGAAAAACCTGAACAAGAACACAAAAGGCACTGGTTTTGACTCTCTAACTGTCCAGCAGGTAGAAGCTTCCGGGGTCGACAAATTCATCCGTGTCGTAAAGAAAGAGCTTGAAGATGGCAAATATATTGCCGATGCAGTAAAAAGGGTTGAGATTCCAAAACGAAACGGAGAAACAAGACAGCTTGGAATCCTGACTCTGAGAGACCGGCTTGTCCAGGGAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAAACAGCAACAGCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 3 2395438-2390505 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009506.1 Methanosarcina siciliae T4/M chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2395437 37 100.0 35 ..................................... TGAAGAAATAGGAACCCAGAAGAAAGTTACAATCA 2395365 37 100.0 37 ..................................... ATTACAGCGGGTCTACGGTCCTGTACTCGAGTGGGGA 2395291 37 100.0 36 ..................................... ATTGACCCGGTGCCCCCGCCTTTCTTTAGTCCCGGG 2395218 37 100.0 37 ..................................... TATATCAGTAAGTGTTAGTTATCTTTGCAGGCGAACG 2395144 37 100.0 37 ..................................... TTGAAAATGATGGGTGAAACGAATGGCCGAAAAAAAA 2395070 37 100.0 35 ..................................... TATCCTCGCGGCTGTCAATATCATGATCATATTGC 2394998 37 100.0 36 ..................................... TCCTTAACGCTCGTTTATGGGACAGAAAAAAACAAA 2394925 37 100.0 36 ..................................... TTGATTTGATTGCCCCAAGTCTGGACATTTCCGAAA 2394852 37 100.0 33 ..................................... GCCGTTCGATATACGAAAATGTGTCTATGCCCG 2394782 37 100.0 32 ..................................... CATTGAACAGACCTCTCAGAAGCGGTGTAGGT 2394713 37 100.0 37 ..................................... ATTTTCCTTTTTTAAATCCCCTATCCACTTTCATGTA 2394639 37 100.0 35 ..................................... TCGTCTTCGGTAAGGTCCTCATCATCCTCAGAGAA 2394567 37 100.0 36 ..................................... TAAAAATCATTAATATATCAAAGACGATTGCACAAA 2394494 37 100.0 37 ..................................... TATATGAGTTTAGCGTATTAGAATATAGAGAATAAGT 2394420 37 100.0 36 ..................................... AACAATGACCAAAATTGACCATGAAGATACAAGAAA 2394347 37 100.0 35 ..................................... CTTGCTTCAGTGCCACCAAGTGCTCCCAAAAGCTC 2394275 37 100.0 37 ..................................... AAAAATACGATATAGAAGAAGAACGAAAGGAAGCCCA 2394201 37 100.0 36 ..................................... ATAACGGGCTGTTCATCTATCATTTTGATAAGTTCT 2394128 37 100.0 37 ..................................... CATTAAGAAGTTCGCAGACACTCACACAATAGAAGAA 2394054 37 100.0 37 ..................................... TTCTCTCCTTCTGCGTTTCCGTGGCAACATCAATCAT 2393980 37 100.0 36 ..................................... TATTTGAAATTTGTATCCTTGAGAAGATACTCCATC 2393907 37 100.0 38 ..................................... TTCTTCAGTCATTCATCTTCCTCCAAAATCTTCTTAAT 2393832 37 100.0 36 ..................................... TTCGATGTAGTTTGAGGTTCCCCCGTTTAGTTCGGC 2393759 37 100.0 37 ..................................... ATTTTGAACTGCATCAAGATAAAGTATTTGCATATCG 2393685 37 100.0 36 ..................................... GTATTTCAAATTCTGTATTGTATTCAGTCATGTGTT 2393612 37 100.0 37 ..................................... CAGTATCCGTTTTTCACTGCAATTCTTCGTTTTCTTC 2393538 37 100.0 36 ..................................... CTACGTCGCGAATTCTACCGCCGATGATACAGGCGA 2393465 37 100.0 37 ..................................... ATTTGATATGCGGATGTTTTTTCTTCTGTTCAATCAG 2393391 37 100.0 35 ..................................... ACAAGAACCTGTAAATCATCTACAGGAATAGTAGC 2393319 37 100.0 34 ..................................... GACCGTTCCCCGCGTAAGTATCATCTGCGGACCA 2393248 37 100.0 37 ..................................... TTGATATTGAACTCATGGGAACTCAGATAATTTCACT 2393174 37 100.0 37 ..................................... TAAGTCTGCGCTTGTTAGCTGTTAACCCGCAGTTAAT 2393100 37 100.0 36 ..................................... AGTTTTATGTATATGTATACATCAAACCCAATCAAT 2393027 37 100.0 36 ..................................... TAATTTGAAGGATTACAACCCCAAGAAAAATTAAAG 2392954 37 100.0 36 ..................................... CAAGTATAACATAGGTGACTCGGTAAGCGTTGGGAT 2392881 37 100.0 41 ..................................... TAAGAGCTGCCAGAACCATAACGCCCATGAATATCGCAAGG 2392803 37 100.0 38 ..................................... GGTACTCTCGTTTTCTCATGATGACCGGGTCGGTAGGG 2392728 37 100.0 38 ..................................... ACCCTGGGTGTTCGTTCAGATTATCAGTAAGTGAATAT 2392653 37 100.0 36 ..................................... CTTCATTGCAATCAGGACATATTCTTATTATGGGAA 2392580 37 100.0 36 ..................................... GTCTTCTCATAGCATTCACGCTTTTACCTGGATTTG 2392507 37 100.0 35 ..................................... CAATATTCTGAATATGAACACTCAGCAATCAAAAA 2392435 37 100.0 35 ..................................... TGGATTCCGAAGAAGGAGAATCATTAAAATCTAAA 2392363 37 100.0 38 ..................................... AAAAGTACAGATGTGTTTTGTCCGGGCAGTACAAATTG 2392288 37 100.0 35 ..................................... CTCTCCAAAAATCAATATAAAGAGTTGAGGGAACT 2392216 37 100.0 36 ..................................... TAGTGAGTATACGGGGGTCAATGGGGTTTATATGTG 2392143 37 100.0 35 ..................................... CGATTTCTACGGTGATACGGTGAAAATTGCAAAAA 2392071 37 100.0 36 ..................................... TAAGGTGGAAAAGATGTCTGATACAAAAGCAAGTGA 2391998 37 100.0 36 ..................................... CGGCTGTATGATCTTCTAAGGGAGCTCTGGGACTAT 2391925 37 100.0 36 ..................................... ATATAAGCATCAGTAGGTGAAGTATCGAACCTGACA 2391852 37 100.0 38 ..................................... TTAATAATGCTGTCAATTTCATCATCTGATGGTTCCTC 2391777 37 100.0 35 ..................................... CAGATACATGGATCTGTCCCAGCCGCTGCATTGAC 2391705 37 100.0 37 ..................................... CAAGCATCAGGTACCGAGTCGGGGACCAGGAAGCAAT 2391631 37 100.0 36 ..................................... TAATTCCCGTACACGACTTCATCAAAATTCAATAGA 2391558 37 100.0 39 ..................................... ACTTCTTGTTCTGTGGAATTGGTAATATCAAACCACTGT 2391482 37 100.0 34 ..................................... TAATCCGGCTACAGCCTGGGAGAGGTCGGTATAA 2391411 37 100.0 38 ..................................... ACAAATTCTATGTAGATGTTCCGAATGTTCAGATAAAA 2391336 37 100.0 37 ..................................... TACTTGCCTTTGTGGACGTTGATTGTAGGCATCTTGT 2391262 37 100.0 35 ..................................... ACAAGGGTGCCAACGGTTTCCCCCACTTCGATTTC 2391190 37 100.0 36 ..................................... CCATCTGCTCCAAGTTCAATTGCGAACCTGCCAAGG 2391117 37 100.0 35 ..................................... AATAGCATCTCGTCTATGGCATCGAGGTCTTCTCT 2391045 37 100.0 35 ..................................... CCTTTGATTTTACAGGCAGGCCATTATAATGATTT 2390973 37 97.3 34 ................................A.... TTGAACTCGCTTCCGAATTGAGAAAGATATTCCA 2390902 37 100.0 36 ..................................... TGTTTTCCCGGGGGACAAATGGGCACCGTTTGATTT 2390829 37 100.0 35 ..................................... GTGCAGTTTCAACAACCCAACGGTACGTTTTCCCG 2390757 37 100.0 35 ..................................... TAACAGGTACCCCGACTCCGTACAACGGGCCTATA 2390685 37 100.0 35 ..................................... TCATTTTCTTCCCTCTACTCTCTCCGAACCTCGCA 2390613 37 100.0 36 ..................................... ATTAACAACCATTACAACCATCGAAACAGCAGCTAT 2390540 36 91.9 0 ..................T.....T......-..... | ========== ====== ====== ====== ===================================== ========================================= ================== 68 37 99.8 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GGTACCGTACTGCCTGAAAAGATTTTCAAATAACACCTTTGTGGGAAAAAAACACCGCCAAAGTAATATTTTTTCTATAATTTTTGTTATTAAAAGACTTAAAACAATTTTTCTATAAATACTTTCCTAAAAAAACGTGTTACGAATTTATTTGTTTCTTAAATATATATAACACTAAAAACGATATTTTTCTCTCTCATCAGCCTTTTGATTGACAGAAACTATAAATGCTGAAAATGAGCCTGAAATTTGATGGTTCCAGAGATTATCAAAAGGCATTATGCAGTAAAATTAAGGTCAAAACCCGAACCCTACCTTGACATATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTCCCAAACCACTAAAAACCCCGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTGACCCGAAAAAAGGGGTGATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TAATATATCACAAAATCGAGAAACTGTCTCTTATCATTCGTTAGCAAGACGGTTAAAAGTTTATTCGGTTTTTTGTCACTTCACCTTTTAAGGGTGACTGAAGCTTATCTTTTGTGCCTTTTGCTTATAGTACCTGTACTTTTAATATTTTTTAAGCACTATAGGTAAACTTTTCATACTGGCGTGGAAATATAAGCTATTTAAATAAGAGAAGGGGGACTGATGGAGTTGATTGCTTCCAAAATTACTGCTGTTTTTTCTCTGGTAGCGTTTGCATTTATTCACAGCCTGACTGCTAGCCTGCCTTTCAAACGCCTGGTCATGAGAGTTGCCGGTCCAGGAGCGGAAAAGCTCTATCTGCCGGCATACAGCCTTGTTGCAGGGCTGACGATACTGCCACTTGTCTATCAGATCTACAAAAATCCGGGGCGGGTTCTTTACAAAATACCTTCGCCCTGGCGCTGGCTCATGGTTGGGGGGCAGTTAATTGCCGGAATGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 4 3875876-3870714 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009506.1 Methanosarcina siciliae T4/M chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 3875875 37 100.0 34 ..................................... ATAATTAAAAAAGTATATATAGTAGTATTCATAA 3875804 37 100.0 34 ..................................... CATACATTTCATCAATTTCGAGGGAGCCAGAAAT 3875733 37 100.0 35 ..................................... TGCTAAGCCTTCGATATATCGGCCTAGCGTCACCT 3875661 37 100.0 35 ..................................... TAATGTTGTTCCGGCAGTATGTTTCATAACCGGAA 3875589 37 100.0 37 ..................................... CGAGGTGTTTGATCTTTTGCCATTCGCTGGTATCGGT 3875515 37 100.0 36 ..................................... CCCAATCGTCGCGGACAGGTGCTATCCTTTTTGGAT 3875442 37 100.0 35 ..................................... TGCATTGCGATCTTGTGACCATCGACGCGGAACGT 3875370 37 100.0 34 ..................................... TTCTTCAGCGCATGATAATGATTCCAAATTATTT 3875299 37 100.0 38 ..................................... AGATTCGCACTTCACGGAGTTCAGTTCAAGGAAATAGA 3875224 37 100.0 36 ..................................... TTATATACACACTTCAAAGGGGTATCAAGAGGCACT 3875151 37 100.0 36 ..................................... TGAGAAGTGGATGCAGTCGGTGATTGAGCAGAATAT 3875078 37 100.0 33 ..................................... CTGAAGAATAGTATTTTCTGGTGACTGTTTTTT 3875008 37 100.0 35 ..................................... TGAAGTACAACAGGCCCTTGAAGAAGGGGAGAAAA 3874936 37 100.0 38 ..................................... ATTTCTTCTGTTCTTCTACAGAAATCCCAACAATTCCA 3874861 37 100.0 37 ..................................... CTGGTCCCGCCGATGAACGCGCGCGCCCGTGGCATGT 3874787 37 100.0 36 ..................................... GAAATACTAATTGAAGCCGCGAAAAGAGAAGCAAAC 3874714 37 100.0 34 ..................................... CATACTTCTCTCAAGGAATCACACCCTTATTTTC 3874643 37 100.0 38 ..................................... ATGGGAATACATTGTAGGCGGTTAGATTCCTCCGCAGG 3874568 37 100.0 36 ..................................... TCCCAGATGTCGAAGTACGAGCTATTACGTCATCAA 3874495 37 100.0 37 ..................................... ACTGTTCTAAATATTCATACGTTAGTTCATCTTCTTT 3874421 37 100.0 37 ..................................... TTTTAACTCTCTGCATTATTCTATTTTTTTTATGTGT 3874347 37 100.0 38 ..................................... TAGAATTGCTAACATAATATGTATTAGGTCCTAAGAGT 3874272 37 100.0 36 ..................................... CTCACACTCTAATTCTTTTACTCGAAAATTAATCCC 3874199 37 100.0 37 ..................................... CCCCAAGGGCATATAGGATTATTATCTGATTTGTCAA 3874125 37 100.0 36 ..................................... ATTGAATGTAACTTGTACCATAAGAAGTCTAAAAAT 3874052 37 100.0 36 ..................................... GTATCGAAAGTAGATCTTGTCTTTTCATATACGGTT 3873979 37 100.0 38 ..................................... CATACTCTCAAAACTTGACTCTGAGATAATTCAACACT 3873904 37 100.0 37 ..................................... CATCTATATTTTCAGCCAAAATAGTATACCTCCATAT 3873830 37 100.0 38 ..................................... GTCACCCCCCAACAACCTTCTTCGATACCATTTTTTAA 3873755 37 100.0 36 ..................................... AGTAAGAGCGACCCCAGGAGAATGGAAAAATGAGTA 3873682 37 100.0 34 ..................................... AACTCATAACACCCAAATTCACTTACACCACGTC 3873611 37 100.0 35 ..................................... CAGATCAAGAAATAAATGATAATATCTATGAAAAA 3873539 37 100.0 34 ..................................... TATTGGTCATCCGAGTACTGTAAAACCCTAAACT 3873468 37 100.0 36 ..................................... ACTTTTTTAATAGTGTCGTCTGCCTGCTTTCGTGTG 3873395 37 100.0 36 ..................................... CCTGATCGTGTTTATGATCCCGTTCATTTTCATCTG 3873322 37 100.0 36 ..................................... TTCAGTGGGACGCTTACATAGGGGCTCACGCTTGTT 3873249 37 100.0 44 ..................................... GATTTTCCGAGTTTCCGGGTCTGAGCTCGTTCTCAGATATCAAT 3873168 37 100.0 36 ..................................... TGTCACAGAATACTATGACGTCTTTCCTGTTATCGT 3873095 37 100.0 37 ..................................... AGTTCACCTTCTCTGATGAACCTTTTTTCCTGAAGTT 3873021 37 100.0 36 ..................................... TAGCCCATGTACACATTACAAAATAGTCTGCCGTCG 3872948 37 100.0 37 ..................................... TGATAATTCTCATGTATACCCCCCGAATTATCACCAT 3872874 37 100.0 35 ..................................... TGTATTTACCCCCTTGGAATATCATTCCTACTTTC 3872802 37 100.0 36 ..................................... TTGCTATGTTGCCGTCTGCCCGAATTGAACGGGCGT 3872729 37 100.0 35 ..................................... TCTACAGGACAATACTTTTCCTGAGACTCTTTCAT 3872657 37 100.0 36 ..................................... ATTCTTTTATCCCTGTCACAAAAACAAGCAAGGTAG 3872584 37 100.0 35 ..................................... TCGATATCGAACTCATGGGAACTCAGATAATTCCA 3872512 37 100.0 36 ..................................... TTTATCGGGATGATGCGATAGAAGAAAAAGGGAGTT 3872439 37 100.0 37 ..................................... TTCTGCAATCCTCATTAAAGCAAATGGCGGATATGTT 3872365 37 100.0 36 ..................................... GTCTTTTGAAAATGCTGCTAATGCGTTTGTCATCCT 3872292 37 100.0 36 ..................................... TTTTCTTCAAGGATTTTAGACTCCTTCAGCCTCCTC 3872219 37 100.0 37 ..................................... TTATTGACGATTCCACTATCCGGGAAATTGTAGCTGT 3872145 37 100.0 37 ..................................... TCAAGTTGCTCTCTTTCCTTCTTTGCTTCTTTAATAG 3872071 37 100.0 37 ..................................... GGGGTTGGATTTGATAGGGAAGTTATGTTTTCATCCT 3871997 37 100.0 38 ..................................... GTCGGTATGGTTCAGGGGGGATTACCCCCGAACAAAAA 3871922 37 100.0 38 ..................................... TATTTTTATGTCATATCAAATGATATGACGATTCTTAC 3871847 37 100.0 35 ..................................... CCGTATGCGATTATTTGGAAAAGATAACAACGAAA 3871775 37 100.0 33 ..................................... TTGTGTACAGGAACTCTATCATACTCTCTATCT 3871705 37 100.0 34 ..................................... CTACAAATGAAAATCATCCTCTCCACAAAGAACA 3871634 37 100.0 35 ..................................... TTATTAAAATATGAAAATTCCCCTTGTGTTATATG 3871562 37 100.0 36 ..................................... TTCCATTGATTATGTCAGCCGCGCTGCTTGCGATTC 3871489 37 100.0 36 ..................................... TTATTTCGTTCCACCAGAGATCGTAATATATTGAGT 3871416 37 100.0 35 ..................................... CATAATATTTCGGAGCATTGGCAACATGTGCGACT 3871344 37 100.0 36 ..................................... TATTGACGGTATAACAAAAACAATTATAAAAATAGT 3871271 37 100.0 43 ..................................... ATGGGACATCCACCGAATTAATCGAGACCGAGCGCCTAACAAA 3871191 37 100.0 36 ..................................... AGTTTTATGTATATGTATACATCCGATGCTATCAAT 3871118 37 100.0 35 ..................................... TTCGATATCTCGATGTTTTCTTTCAAGTCGTCTAT 3871046 37 100.0 38 ..................................... CATCCTGATGTACATTGATACGGACAACGTTTATAACA 3870971 37 100.0 37 ..................................... AATCATTTGATATTCCAAATACAGTAACAAATCTTCG 3870897 37 100.0 36 ..................................... ACATAGAAGGCCTTGCGTCAAAACTTAGCCTTTTTG 3870824 37 100.0 37 ..................................... ATATTCAGACCCCCGGTTATGACACTATGTTACGGAA 3870750 37 97.3 0 .................................G... | ========== ====== ====== ====== ===================================== ============================================ ================== 71 37 100.0 36 ATTCGAAAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGAAGTTTTTATTGCTTCAAAACAGCACCATATCAAAGGAATCGTTGACGAAGTACTGTTTCTTGAAGACGGAACTGCTGCCCCTCTTGAATACAAATTTGCCGAATACAAAGACAAGATTTTTAAAACCTATAAATTCCAGCTGGTTTTACAGGCGCTTTTGATCCGGGAAAATTACAATATCAAAGTAAACCGGGCATATATCTGTTTTACTCGTAGCAACAGCCTGGTCAAAGAGATGGGGATTACCAACTCTGATTTCAAAAAAGCCGAGAAAATTATCGAGGAAATAGTCGAGATAGTTCAAAAAGGCTTATATCCAAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTGTCTCCGAAAAAGGGCTCATTTCAGACCTTTTCTGGCCAAATAACGGAAAATTTTGCCCT # Right flank : AATTTTTCTGTTGATACTCTACAGGCTCTAGTTTGGCAAATTTGAATGTACATTTATTTATCATATTATAACATATTATAATATATGTCTACGATAGCTATAGATCCGGATGTAAAGGAATCACTTAAAGAGTTAAAGTTAGCTCCGGAAGAGTCCTATAATTCGGTAGTTAAAAGACTTATTAGCGAAATTAAAAAGAAAGAAGACTATAAACCTATGTTTCCAAAAGAAGGAAAACAAGAACCTGAGGAATCCCATATAAAAGATTTTAATGCCTGGTTAGAAAAAAAGCTGGTGGAAGATAAGAATATTTTAGATGCACTTGGAAGAAAGTGATGCTTTGATCAGTTTAATTGAAATTTTGAAAATTCATCAAATGGTCATAGATTACGATAAATTTAAAGATCCGGATGATTATACCTCTGCAATACGTTCTTTAGCTACGTTAGAATTAATGTTTGAATTTTTAATCAAAGGATCCAATACTATTTTCGAAAATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAAAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //