Array 1 30132-28838 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJHNB010000018.1 Aerococcus urinae isolate Au-49-B14, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     30131	    32	 100.0	    34	................................	AGTATCGTAATTTAGTTTTCTTTTGCAGATCTTG   	
     30065	    32	 100.0	    35	................................	ATCTTCTCGTGATACTGACAAGGAAGCGACTAAAG  	
     29998	    32	 100.0	    35	................................	TTGGGTGTAAAAGCATGCCCCTTCATCGTAAATTT  	
     29931	    32	 100.0	    35	................................	TTTGTCCCACTCAAAATCCGATACCTGCATGGCAA  	
     29864	    32	 100.0	    35	................................	TCATTGTTGTCAAACCATTGTTTTAAGGTCTTCCA  	
     29797	    32	 100.0	    37	................................	ATGAGCTCTTTGCCGGCGTTGATTACGTCCTTAACGG	
     29728	    32	 100.0	    34	................................	ATCGCCCACAAGCTGGGGTTTCCCGATTAGCTCA   	
     29662	    32	 100.0	    35	................................	CGCTCTTCGGATAAACCCATTTGTTTACCATGATC  	
     29595	    32	 100.0	    34	................................	TTACGCGGGTAGTGCTGGGAACAGCTTTGGCTGG   	
     29529	    32	 100.0	    33	................................	CGAAAGCCCCACCTACAATAAATAGGATATTAG    	
     29464	    32	 100.0	    34	................................	TTCTTTTTTACTTCTTAAACTACTTAAAGCCTTT   	
     29398	    32	 100.0	    33	................................	AACATGTCTTCGATCTGATCGATCTGCTTTTGC    	
     29333	    32	  96.9	    35	..........T.....................	TCTTAATTGCTTCACTACGCGTGAAAATACTTGAC  	
     29266	    32	  96.9	    34	..........T.....................	ACACCAGAGGAATACAAGCAAGGCAAGCGAGTGA   	
     29200	    32	  93.8	    34	................T.T.............	CATGAGACAGGGACTTATAAAGATCCGCCCCGAC   	
     29134	    32	  90.6	    34	..............A.A....A..........	CAGCCACCCTTAGTGTCTTTGGACGAGACTTCGA   	
     29068	    32	  93.8	    34	.............T.............T....	TCCTATAATCCAAAATCAATAGAGTAAAATTGAG   	
     29002	    32	  90.6	    35	T.........T.A...................	GACTAGATCACCATTAGTATCATAAACGCTTGTAT  	
     28935	    32	  93.8	    34	..........T.....T...............	CACTATTTGTTAGAGCGAATCAAGTGTTATCTGA   	
     28869	    32	  87.5	     0	..........T.A....A...........T..	|                                    	
==========	======	======	======	================================	=====================================	==================
        20	    32	  97.2	    34	GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT	                                     	       

# Left flank :   AGCTATTGGCAAGGTATATCCGTGGAGACATTGACTACTATCCGGCATTTATTAGTTAAAGGTGATTTGAGATGATGGTGTTAATTACTTATGACGTGAATACAGAAAGTAAGGCTGGCCAGAAACGCTTACGCAAGGTAGCTAAAGTTTGTGTTGATTATGGTCAACGGGTTCAAAATTCTGTTTTTGAATGTAGTTTGGATCCTGGGCAATTTGCACTCGTTAAATCGAAGTTAGATGATATCATAGATAACGAGATCGATTCGATCCGCTTCTATAATTTAGGTAAGAACTGGGATCATCGAGTACAGACTTTAGGACGGGACGATACGTATCACCCTGAAAAGGATGTCTTACTCCTATAACGAACCTCAAGCACACAGATTTATAGTGAAGGCTTCGGATGAAAATTGGCATTAAAAATATAGTATAAGTGATTATTTTGCTCTTTTTGTTCCACTTATATTATGAAAAAAGGATGAAAACTTATAAAAAGAGCT
# Right flank :  TTACATGCAGCTAAGTGGTTCAAATCAGGTACAAAGTGCAGGTTTTCTTTCAGCAAATACTTGACTATTTACACCAAGAAATCAGCCCTTACCAGCTCCACCAACAGAGAGCCTAACAAGGGCTTTTTCTATTGCGGCGACTCGCAAAGGAACTAAAATTATTTAACGGTTCCTAAAAATAAATCATAACACCACTGAAACCGATCATCGTTGATCTTTTTTACTAAGTTGACAGTGGCACTTAGACAGGCTAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTTATTTTGGTTACCCCAATTGAAGAGGAGTCTATGCCGGATGTAATCGAAGAGAATGAAGCCGCATAGATGGCGGTTATGTGAGACTGTGATTTTTTACACAAGTTCACATAACCTTTCTATGCGGCTTTTTT

# Questionable array : NO	 Score: 9.12
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [7,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCAAGCTACACGCTTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.50,-8.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [16-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,10.05   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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