Array 1 29546-27661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWJP010000001.1 Streptococcus agalactiae strain 565 NODE_1_length_150633_cov_20.4688, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 29545 36 100.0 30 .................................... TGTTCCAGTAAAAAGTAATTTTAAAGCATT 29479 36 100.0 30 .................................... TTGCACAGTTTATAGCCGTAAGCACGTTTT 29413 36 100.0 30 .................................... ACAAGGTTGGGCTGTTTGTAAGTTTGAAAA 29347 36 100.0 30 .................................... TACGTCGATAACAAAATATACACCTTTTAT 29281 36 100.0 30 .................................... ACAAGGTTGGGCTGTTTGTAAGTTTGAAAA 29215 36 100.0 30 .................................... GAGCCAGTCTTTTGCTTTCTATACCACTTG 29149 36 100.0 30 .................................... TTTAGCTAAACAAGGTATCTACAACGTTGT 29083 36 100.0 30 .................................... AATCCAATCAGCCACAAACTGTGGCACTTC 29017 36 100.0 30 .................................... CTTTGATTTTGTATGAACGCTCCATAGTAT 28951 36 100.0 30 .................................... AAAAGCATGTGAGGAAGCATTGAAAAAATA 28885 36 100.0 30 .................................... TTCAGCTTGGTACATTTCAAACCCATCAAT 28819 36 100.0 30 .................................... GGGTAAAAACAACTGGCATTGCACAAATTG 28753 36 100.0 30 .................................... TGCCACCCCGGCTTATATCCTCGTTGCTTA 28687 36 100.0 30 .................................... ACAAACCAAAACGTTGAAGAGTTAACAAAA 28621 36 100.0 30 .................................... CGCAAAAAATCCAAGCAGACAAAATCTACT 28555 36 100.0 30 .................................... AAGAGAAGATTTCGAAATATATCGAAAGCA 28489 36 100.0 30 .................................... ACCAACAAGTTCATTATGAACCTCGAACGT 28423 36 100.0 30 .................................... ATAAGCACCAAGTTCTCGCGTTACTCGCGA 28357 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 28291 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 28225 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 28159 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 28093 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 28027 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 27961 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 27894 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 27828 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 27762 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 27696 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //