Array 1 440418-438588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANP010000002.1 Vibrio metschnikovii strain M1W Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 440417 28 100.0 32 ............................ GTTGAGTTAGTAACAGCGCTGCTTTCCTGATT 440357 28 100.0 32 ............................ TAGCATGTACGCAGCAAGCTGCGACAATGAGC 440297 28 100.0 33 ............................ CCGCCCCCGACCGCCGCCGCCGCCGCAATTGGA 440236 28 100.0 32 ............................ ATCTTCAATTGATGCTACATTTCCAGTAAAGT 440176 28 100.0 32 ............................ AGCACGTAAGTGCGTCACCCCCATAGGGACTA 440116 28 100.0 32 ............................ ATATATAACTACGACCATGAGCTGATCGATTG 440056 28 100.0 32 ............................ TTCCCCTGCTGAAAGCCGCAGTGTGGGCAGTT 439996 28 100.0 32 ............................ TTGCACTTCGGCGATAGAAGTTACTGGGGTGA 439936 28 100.0 32 ............................ TCCTCTGCCCTTCTTAGGGATGCTTCATAATT 439876 28 100.0 32 ............................ ACATCCATTTTGTTGGCGATGAATGACTTTCA 439816 28 100.0 32 ............................ ATTCCGCTGTGTAGTAGTTGAAATCGGCGGAA 439756 28 100.0 32 ............................ GTCTTGAGCGTTATTCCAAGCTCTACCACCCT 439696 28 100.0 32 ............................ TGTCCATGACAAGCATGTTTGGGCGACTGAGC 439636 28 100.0 32 ............................ TCTTTTTCGTTCAACCTCAACATCTGACGTTA 439576 28 100.0 32 ............................ GCAGCAAGAAAGCAAAGAGCCGGGCAGTAAAG 439516 28 100.0 32 ............................ TCTTGAATCAAGATGATTTCAAAACCTTGATA 439456 28 100.0 32 ............................ TATAACGGCACCAGCAGCACCGAAAGCAGCAG 439396 28 100.0 32 ............................ GTTGTATTGTATTACGCAAGTATTCATTTATT 439336 28 100.0 32 ............................ GAACCCAACCTGACCACAGTAGTCATCGCCGT 439276 28 100.0 32 ............................ TTGACCTTGTAAGTTTTGAATCTGGGCTTTAC 439216 28 100.0 32 ............................ AATATAACCCCGAATAGTATTGGCATAATCTT 439156 28 100.0 32 ............................ TATAGGGGAAAGGGCATGTCAAACAAAGTAAC 439096 28 100.0 33 ............................ CTTAATAATGAATTGCAATGTAAGCAAGTTATT 439035 28 100.0 32 ............................ CTGAACTAGCTTTACTCGGATGTCACGCAGAC 438975 28 100.0 32 ............................ ATAAGCAATCAAGATCAAATTTCACATTTGAC 438915 28 100.0 32 ............................ TTGCGTCCTGCCATTTTTGCCGCCACAGCATC 438855 28 100.0 32 ............................ ATTAGTAGCATTCAGATTCCTTCGCTTTCCTC 438795 28 100.0 32 ............................ CACATGGGTAGACGTTGGCGCAGTAAACAGGT 438735 28 100.0 32 ............................ GCAGACTAACACGGGCAGCTCAGGCGTTTGCG 438675 28 100.0 32 ............................ TGGAGAAACTAGCGGAATAATCATCAATGACG 438615 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAGCGAATAGAGCGGGATATGCAGCAAAAAGCGGTATTATGGGCCGCTAAATCTGGTCAATCGCTTGCAAAATGCTTAGCCGAACTTGAACAAAACAAGCCAACAGCATTGTGCCGTTTGCCGTTTATTTACCTACATAGCCAGCAAACGAAGCAGCGCTCTCCTGAAAAAAGCAGTAAGTTCCCGCTGTTTATTCAGATGCAGCAACAAAGCACATCGCAAGACGGGGCCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGACAATCAGCATTGGCAACCGTCCCGTATTTTTAAATTGAACGAAAAAGGGTATTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAATAAGTTACAAAGGGTGGTTTTTTATAAGGTAAAAATGCAATTTTTATCCTAACTAACTGTTGTAACTTATTTTTATTGATTTATTCTATA # Right flank : CGCCGGATTCGATGGAATCAAACTCCCGCCAGTCATCCCCGCGAAGGCGGGGATCCATTCTGCAACAGATGCCAAGTGCTTAAGTGAGCGATCAATTGGCCACAGATTACTGATACTTCGCATAGATTCCCGCCTACGCGGGAATGACGGTTTGGCTGTGGTTTTGGGAGCTGAACTCCATAGATCCCCGTCATGTTTTGCCTGCTACTGCTGTGAGGCAGGGAAATCAAGGCGTAGCGATCATCGAAAACTGATCCACTAAATACACTTAGTCAGCATAGATTCCCACCTTGAGGGCAATGATGCTTGACGCTTTGAATACTCGATTGTTCACCTTGATTACAAGAAAGCGTGAGTTGTTTAACAATATGTGCGCCTAATTCCTTAGACACTATGTTGTATGATTGATGTGAGTGGTGGAACACATGAGCTCCCTAACGTTACCTTGCCAGCGAGAGATTGATCTCTCATCAGAGTTAAACGTCGTATTACAAGACAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5188-5697 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANP010000028.1 Vibrio metschnikovii strain M1W Scaffold28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5188 28 100.0 32 ............................ TGAAGAGGCCCATGAGCGAGTAAGCTATACGC 5248 28 100.0 32 ............................ AAAAATGGAGTAAAGCTTAGCCCTCCTATTCA 5308 28 100.0 33 ............................ ACTCCATAGAAGTGGAGCCTTTACGCCATCTAT 5369 28 100.0 32 ............................ GCAAGTATTGAATTAACTGGCGCGGATGGTGA 5429 28 100.0 32 ............................ GCTGGGCCGCTGTCCCCGCCGTTAATAGGCAT 5489 28 100.0 32 ............................ CGCTTGCGTTTGCAACGGGTATTTCATTTGGT 5549 28 100.0 32 ............................ TCGGAACGTGTCCAAGTAAAATTATCGGCAAC 5609 28 100.0 32 ............................ ATTTATGGGGATTGTAAATAGCGCAAAATGGG 5669 28 100.0 0 ............................ | A [5692] ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATGATTAACAAACATTATCGTTTAATCACATTTGGCAGCTATTTTAATTTGGTTTGCATTAATGGCTTATTTATCTGATATTTATCATTAGAATCAATGGGTAAGCTTAAGTCGATTTAAAAAACAACGGTTTTTCTGTATCAAAAATTAGCTCATTTTAGATTAAGTATTTGATGTTGTTTGCTATTTTATAAGGGTTGCTTGGTGTTTCAGTAGCTATCTGGAACTGAAATATAACAAACAATTCAAGCAGACCCTCAACGCGCGGCATTTTTATTATGCGTTGAGTTTAGTGATTACGGTGTTGTGCGGGAAGTTGCTAGTAGCGTTTCGGGCTACTTAATTGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTTTATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCATT # Right flank : TTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGCAATGCGGTGAGTTGGCAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGTTTTTTCAGGAAAATTATGATCAGAGAAATTACGAAGTCAGATTTTGAATCATTCTGGCCAACATTTTTAGATGTAATCCAAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1977-2484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANP010000038.1 Vibrio metschnikovii strain M1W Scaffold38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1977 28 100.0 32 ............................ ATGTGAGCTTCATCGATGACGAAAAGAGGCCC 2037 28 100.0 32 ............................ TTGCCGGAAGTTGAAGTCTTGCTGGTAGGTCG 2097 28 100.0 32 ............................ AGCAATCAAAAACACCGCCACAAATGCAATTA 2157 28 100.0 32 ............................ TATCGTATTTTTTGCACAAAAGCATAGTTAAG 2217 28 100.0 32 ............................ AAATTATGTTACGGGCTTCGCTAGCAAAGCGA 2277 28 100.0 32 ............................ TAGATTGTGTAGGCGTGCCAAGTGGGTTTTAC 2337 28 100.0 32 ............................ TTAGCTTTCGATTTAGCGTGGTATGCGTAGCT 2397 28 100.0 32 ............................ CCGAAATTAAAAAGCATTTCGAAGCGTCTTTT 2457 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAGCTACGTCTTATTTGCTCGGTAGCGTACAAGTCGATGACGACGAGGTGTTTTCATTTCTGCATAGGATAAATACTATATCTATTACCCTAAAAGGCGTCAGTGTTGAAGATGATAGTTTGAAGCAACTCTCTCGGCTGCTTTGGGAAATGTTGGCTGGGTTTAGTTGGGTTGATGGTTACCGAGATTATGACTATTTCGATAGTATGTTCCATAAAATTTAGAACAAACATAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCGTTGATTTTATTAGTTTTCAGCGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : AATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCGTTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTAGGCTATTCAGAGGATACTATGACCGATTTAAAAAATAATGAGCAATATTTCGACGTTTCATTTGAGAAGATTGCTACCCCTGAGCAGGAATATACCGACGTTGAATTTGAAGATTGCCAATTCTCTGATTGCGATTTCTCATCGGTTAAATTTCATAGATGTAAGTTCACAAACTGCATATTTGAACGCTGTAATTTGAGCTTGGTCGATTTTGCTAACTCAAAGTTATTTGAGCTTAAATTTCAAGACAGTAAGTTAGTTGGTGTTGATTGGACGAAAGCGACATGGCCAGTTTATCATTCAGACTTTGAGCTAAGTTTTAAGCGTTGTATTTTAAACGACTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //