Array 1 73035-74443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKZM010000008.1 Vibrio aestuarianus subsp. cardii strain 15/064 3T2 NODE_8_length_74582_cov_45.462736, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 73035 28 100.0 32 ............................ AGTGCCACGGGTATGCAGCTTAGTGCCGTACT 73095 28 100.0 32 ............................ AATAAAGCTAATGGTATTCGCAATAGAAGCAT 73155 28 100.0 32 ............................ AGGAAATTTCTGAGGCGACGGGTAAACCTGTC 73215 28 100.0 32 ............................ TATTTAATAACTGGTACCGCTTTGGTGGTTAT 73275 28 100.0 33 ............................ AGTTCGACGCCAATGCTCGTTCAATGGTTGGCT 73336 28 100.0 32 ............................ ATCATCTTCACCAAAGAATTCGTCCAGGGCAT 73396 28 100.0 32 ............................ AGCGGCACCTCAAACTTAACAGGGCGCCCTTG 73456 28 100.0 32 ............................ AACTGAAATTAGTGATCACCCGTAAGGGCTTG 73516 28 100.0 32 ............................ ATCATCTAGAGAACGAATAGCTTCTTCATCTT 73576 28 100.0 32 ............................ AACGAGAGAGCGGAGAATGGGGCGGTATTGAT 73636 28 100.0 32 ............................ TGACCAATCATAATGAAATGGTCGCCCGTCAT 73696 28 100.0 32 ............................ ACCATGGCGTCACCAGACTCAAATTCCAGCGT 73756 28 100.0 32 ............................ ATGAGAATCTGGTTTTGTTCAACAAGTAGCTG 73816 28 100.0 32 ............................ AGGAGTTGCAGGAGCTTTGGGGCGATTGGGTA 73876 28 100.0 32 ............................ TGGATAAACTTTTTTCAGCAGGGTGTCATCGT 73936 28 100.0 32 ............................ GACCACGGGTTTCCTGCTTAATCCAGGCTGGC 73996 28 100.0 32 ............................ GCCACTGCGCCAAGGTCAAGGATATCGAGGAA 74056 28 100.0 32 ............................ AATAAGGTCCTTAGCTATTAACCACATAATAC 74116 28 100.0 32 ............................ TGGTTGGTTTCCTCGTTATGGCAAACGCAAAA 74176 28 100.0 32 ............................ TGGCTTATTGCATTTGCAGCAAAGAGCTGTGC 74236 28 100.0 32 ............................ TCGTTCATTAACATCACCTGGCTTATTGCATT 74296 28 100.0 32 ............................ TTTAACTGCAACCAGCACATCTTCGCTGTTGG 74356 28 100.0 32 ............................ ATGACCGTTTGATAATCAATGGCCCACATTTC 74416 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGATGTAACTTACGTTAGTTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCCGACAAACCGCTGGAGGAATGCTTGGCGGCTTTGCAACAAAGCAAACCGACAGCATTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTTCCGCTGTTTATTCAGATGGAGCAGCAAAAGACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGACAGTCCATGTTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTAAATACAAATAGTTGCAATAGGTGAGTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCCTGTTGCAGCTTATTTTTATTGGTTTATTCTATT # Right flank : GCCTACATTAAGTAACCTGAACTCGGGATAAGAAAAAATGAACTAAAAGCTGGTTCAGTGATCAGATCTTTCGACCAAGAAGGACTCATCACTAAGGAACCAGCTATGCGTAAATTAGTAGACTTATTCTGTCATGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 146-2852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKZM010000084.1 Vibrio aestuarianus subsp. cardii strain 15/064 3T2 NODE_84_length_13461_cov_41.681491, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 146 28 100.0 32 ............................ ACCATGAACCACAACGGTATTACGCTCGAAAC 206 28 100.0 32 ............................ CAGAAGCGAACGACGTCGCGCTTTCGGTGGCC 266 28 100.0 32 ............................ TGATCGTCGCTCCGGAGTTCTCACACCTATCG 326 28 100.0 32 ............................ GCACTGTCACGGTCTGCGCCGTACATCTTGGC 386 28 100.0 32 ............................ AAAAAGCGAGGCGCCAACGCCTTCGCTACCGA 446 28 100.0 32 ............................ AGTAACTGTTATATCAAACGGAAAAGAGGTTA 506 28 100.0 32 ............................ GATATAAAAAAGCCTAGCAATGATGTTAACAA 566 28 100.0 32 ............................ TATTTCCGATAGTAAATCGCCAACCTTACACA 626 28 100.0 32 ............................ GCTGAGACTGAAGTGCAACTTCCGTCTTTAGT 686 28 100.0 32 ............................ ATGTCGAGAACTTGATAGTACCCGCCCTCTTT 746 28 100.0 32 ............................ ACTAAGGAGGGAAGTGAGTGGAGAAATGGTGA 806 28 100.0 32 ............................ ACCAAGCAGTCCACCAAGAGCCTTGCCTAGAA 866 28 100.0 32 ............................ ATGATACGGACTCTCTTCAACCTCCCATTTGT 926 28 100.0 32 ............................ CGCATGGTTTGTGCGTGAAACACTAGGAGAAA 986 28 100.0 32 ............................ TAGGTAAAAAGCAGGAGTTGTTTATGAGACTA 1046 28 100.0 32 ............................ TGTTAAATTCACGCGCGTTTCTTGGTTGACCA 1106 28 100.0 32 ............................ GTATCAGTTGTGTCAGTTGGGGGAACATCATC 1166 28 100.0 32 ............................ GCTATCTTGCTGATGTTTTCAAATCGCAATGA 1226 28 100.0 32 ............................ ACATGGAACCTTTTCGTACCTTTGCGATGAAA 1286 28 100.0 32 ............................ CATCTGAAGAAGAAATCTTAAAATCAGAGCGC 1346 28 100.0 32 ............................ AATTAAATGAAATAATCGAAAAACAGAAAGGT 1406 28 100.0 33 ............................ GCTATGGAAAAGGCCCTCTAGTTGCTCAACCTT 1467 28 100.0 32 ............................ GCAAAGGTTGGCAAGAAGTTTGTTATTATTGA 1527 28 100.0 32 ............................ GAGCAAGACAGAGAGAAAAAGCGCATAGAGAT 1587 28 100.0 32 ............................ CATATCTCCAAAATCATCAGGGTGCACGATAA 1647 28 100.0 32 ............................ TTGGACGCTTTGTATACACACTCACACGCTGT 1707 28 100.0 32 ............................ TCTTTGTGCCGGGGTAAGCATAGGAAGTACTC 1767 28 96.4 32 A........................... GAGCTTGAGTGTTCGCGCGACTTCACGAGCGA 1827 28 100.0 32 ............................ GTGCTCAATAATTAGTGGCCATGTTACTGATA 1887 28 100.0 32 ............................ AGCATTCACACCCTGGCTCTATGTATGCGAAC 1947 28 100.0 32 ............................ CGTTACAAAACACAACCAAATCCATATTATCC 2007 28 100.0 32 ............................ TTGCGTGGCTTGATGCGCGATTCCCTTGCCTC 2067 28 100.0 32 ............................ AGTCAATACCATCAAGTAGTCCATCTTCTTTT 2127 28 100.0 8 ............................ TGATCGAT Deletion [2163] 2163 28 92.9 32 A....T...................... TGGCTAGTTTTGTGATGCCGCAATCTCTTCCA GC [2172] 2225 28 100.0 32 ............................ GAGCTTTGATAACTGTCGATATAGAAGCGAGA 2285 28 100.0 32 ............................ CCAATATCATGATTTGACTAATGTTGAGATAA 2345 28 100.0 32 ............................ TTGCAAACCACCGCCGCCCGTTAGGCTTGTCA 2405 28 100.0 32 ............................ ACTCATTACCTGAGCGAAAGCCCCTTTATAAA 2465 28 100.0 32 ............................ ATCTGGGGTGGCGATGGTATAGCGCAATATCC 2525 28 100.0 32 ............................ TGCGTCCATGTCCCAACCACCGTCTATGACTT 2585 28 100.0 32 ............................ AGTCTCCGCAGTGTTTGTCGGCCCACGCTTCG 2645 28 100.0 32 ............................ ATGGTAATGCCAGGTGACAACATCCAAATGGT 2705 28 100.0 33 ............................ ATCCCGCGAGGGTCTTTGCATTTTGGGCGAAAG 2766 28 100.0 32 ............................ GTCTAGTGCGAACATAGCAGCTCCTCGAAAAA 2826 27 82.1 0 ...........T.T.........-T..C | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCATGTTGAACTTGCTTGGCGGACTCATCGCTTACTGTTTAAAACCAGAAAAGCCATCTCTAAATATCACAAGTACCGAAAAGACGGGGCTCATGGCGATTGCTTAAACCGATCTCAGGTTAAGTAGCACTGCTTGCTCTCCAAG # Right flank : CTCAGGAAGCTCATCAGTACTGATAGACTTCATGTTGGTAACCGTAGGTTTCAAGAATGCAGAATTGATTTTAGCTAAAGGATTATATTCGATGAGTCCTTTTGTTCTGCGCAAAACTCATAATTTCATTTACACGTTGGCAAATTCTTTTTAGTGTTTCTAGATGGCCTTTTGCTTGAAGAGGTTGAAGTGTGTTGATAACTAATGGTGCTGTTAGCTCGGTAATAGGAGTATTTCCGAGCTTTGGTAGTAGGTGGAGATTTAAAGCTCTTTTAAGATTCATAAGAGTCTTTTCACTGATGGCTGCGCTTTTTACCGTTAACCAACTGTTTGTAACTTCATCTAATGTGGATAGTAAGCGCTGTTGCTCTATCGTTTGTTGGTTCTTGAGTTTGACTTGAGGATCAATGCCAGCTTGTAGCGTTTCTATCGCGCCTAGAGCCTTCTTTCGTGCATTTGTTAGGGAAAGGCTAGGGTAACTGCCAAACGTCATGTTAGCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //