Array 1 17555-17074 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911400.1 Salinispora oceanensis strain CNT-138 B173DRAFT_scaffold_0.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 17554 36 100.0 38 .................................... AGGTCGTCATCACCGATCGCATCCAGGAACGCGCCGGC 17480 36 100.0 36 .................................... GGTGTTCACGTCGGGGTACCTCCCGGCCAGACCCCG 17408 36 97.2 37 .................................A.. TCGTCGATGAGTCGCACGAACACGGCTAGGTCTTTGC 17335 36 94.4 39 .............G.A.................... TCGAGCACCCATCGCGCGGCGACGGATCGTGCGGCAGCG 17260 36 100.0 39 .................................... ACCCACGAGCACCAGGCGTCCGCGCATGACGTGCTGCTG 17185 36 94.4 40 .............G....................A. GCCGGATGCGCACACGACGCCCACCAGGGACGTGGGCGCG 17109 36 91.7 0 .T..T........G...................... | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 96.8 38 GCCGCAGCTCCCAACGGAGCTGCCCTTCATTGAGGC # Left flank : CATCAAAACCCGATGAACCTTGACGACGTGCGACGCTACCTCATCGCGTACGACATATCCGACGACATCCGCCGAACGAAGGTCACCAAGAAACTCGAATCATACGGCGACCGCATACAGCACAGCGTGTTCATCGTGGACACCCGGCCAGCCAAGTTCCTACGGCTCCGCACCCAACTCACCGAAATGATCGACGAGGAAAGAGACTCCGTCATCTTCTGCAACCTGGGTACCCTTCGCGAGAACAACCGTCGATCGCTCGACGTGATCGGCTGCAGCCGCACCATCACCAACCACGGACCAGCGATCCTCTGAACCACCGGCGAAGCCTGCGTCGTCTCGCCGCCAAGCGCGGACCCGTCGCCAGGGTGTCAGCCCAGCTCACATGCCGGGTAGGTCTGCGGGTACGCGGCCTTGAGCGCTACTCCGCCTCGCAGGAAGCGCACCCTTCGCAGCAGACCGGTTCAGGTGCAGGTCAGAGCGGCTATAATTCTGACCCA # Right flank : TTCAAACGTCCACACCTTGCTCTTGGTGCCATACGAGTGTGTTCCCTTCTACGGCCCGCCCCTGCGTCCGCGCTGCTGGTGATACGAGGGCTAGCGAATCCGGCCATGATCAGGGGATCATCCACAAGCATCGGAGATATCCGACAGCGCAGGACCGGCGCTGGCGAGCGGTCGGGCCTGCGGCGAACCTGAACAGGTCGACGAGGTCACCGCTCGGCTGCTGGCCACGGCCACGCGCAGGTGGAGCAGCCTTGGCCGCAGGCCACCGACAAGCTGGTCCCCGCAGCGATACGCCAGTTGCGGGGACCAGCCCGTGCAAGGATAAGCCCGGTCAGGCGCCGCACCGTCGACCTCGCGGGGTATTAGTGGTAGCGAGGGCATCCCGGTGTCACTTCAGTGACCGATCCCCCACCAGTCGTGCAAGGAGAAGCGTTGTTTCTCTTGGTGGAGGCGGATCACCTCGGCGGTGTAGGGCATGGTCGGGTCGGGTAGCTCGTCTG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAGCTCCCAACGGAGCTGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 73466-70693 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911400.1 Salinispora oceanensis strain CNT-138 B173DRAFT_scaffold_0.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 73465 30 96.7 32 .............................G CACCGACTTGCACGCGGCTCGACCCCCGCTCC 73403 30 100.0 31 .............................. AGTACAACATCCCGCAGTTAGTCGCACAGGT 73342 30 100.0 31 .............................. TGGACGGTGACCTCCGACACGCGCGGCTCGT 73281 30 96.7 31 .............................T TGGACATCGCCTCTTTTTGTGATGTGTCGAG 73220 30 96.7 31 .............................A CCATCTTGGCCCGGGGCATCGTCGTGCGAGG 73159 30 96.7 31 .............................T ACTCGCCGAGGAGCGCGGCCCGTTCGACAGT 73098 30 100.0 31 .............................. GGTTTTCAAGCACGGCATCCTGTCGAGGTAC 73037 30 96.7 31 .............................G CTTGGGTCCGAGCCATCCAGGCAGCATCACC 72976 30 96.7 31 .............................G CCGTAGCCGGCGGCAGAGACCAGCACGACCA 72915 30 96.7 31 .............................T AGCTGGTGTGGGGTGGTGGCGGCGTAGTGCA 72854 30 93.3 31 ............................TT GTAGTCATTTCCGGCCGTTAACCCTGTCACC 72793 30 96.7 31 .............................T CCGATCAGCCAACGTTGGGCCAACCAACGTT 72732 28 90.0 31 ....................--.......A TCACGACCGGCCTACTGTCGATCAAGGACCC 72673 30 100.0 31 .............................. CTTCCGAGTACGCGCCGGAACCCAGGACCAG 72612 30 100.0 31 .............................. AGATCGACTACGTGGTCGACTCCAACGCATT 72551 30 93.3 31 ............................AT CGTGTCCTGGTCGTGGGCGTACTCGGCGGTG 72490 30 96.7 31 .......................A...... TGATCCGTACAGCCCGGGGCCGGTGGGTCCT 72429 30 96.7 31 .............................T AGGTCGTAGCCGATCGTGCACGCTTCCTTCG 72368 30 93.3 31 A............................G TGTGCACCCGGCCGGGGTAGAGCAGGCACCC 72307 30 96.7 31 .............................T TGTAGAAGGCCCGTTCGGCGAGCGCGCGTTG 72246 30 100.0 31 .............................. CAAGAGTGACCCGTGGGCACCGCCCAGTCGC 72185 29 96.7 31 .....................-........ AGTACGACGATCTGCGTCGGGCGGTCGCGGT 72125 30 100.0 31 .............................. ATCCGAGGCCCTGGCGGTGGCGTTACGGGCG 72064 30 96.7 31 .............................T AGACGACGGCCTGCGGGGTATCGGGGTCGGG 72003 30 100.0 31 .............................. CTCCGACGGCATGCAGTGGCCGCCGCTGATC 71942 30 96.7 31 .............................A CGCGGGTGGCGCCAGGCGGTCCGATGGCGAC 71881 30 100.0 31 .............................. CAATGGGGTTCGCGGTCATCGCCGCGTTGAG 71820 30 96.7 31 ............................C. CAAGTCCACCGCCCCGCATCAGTCGGCCGCT 71759 29 93.3 31 .....................-.......T TGATGGATGTCCCGGATCCGGTCGCGTTGGT 71699 30 100.0 31 .............................. TGGGTAACACCGTCGGGGAACGCGGCGGGCT 71638 30 100.0 31 .............................. AGAGGGTGTGTCGAGCCGTCCCGCTCGGTCG 71577 30 100.0 31 .............................. CTGTCGGTCATGTGGATGTCGTCGCTGACGC 71516 30 100.0 31 .............................. CGGCGCGTGTCACCGCGGCCTGGTTTGACAG 71455 30 100.0 31 .............................. GCTGCATGACTCCCAAACGCTCAGCACACCC 71394 30 96.7 31 .............................A CTGATTCGAGTGTGCGCGCGTATCAGAAGAG 71333 30 96.7 31 ............................A. GGTGCACGAGTGGTCGGGCCCGGATGCTGCG 71272 30 100.0 31 .............................. GTTCTTCGGGTGCATGTACTACGCCGCGCTG 71211 30 96.7 31 .............................A TGCCGCCTTCTGGGGAGAGGACGGCGAGGCG 71150 30 96.7 31 .............................T CGTCCGCCTCGGGCTGTGTGGTGGTGGTCAT 71089 30 100.0 31 .............................. ATGATCTCCGCCGGTACCTGCGTGGGGATCG 71028 30 100.0 31 .............................. CGGACGATGGCGCGGCAACCACGTCCTGCGC 70967 30 100.0 31 .............................. GTTCTTCGGGTGCATGTACTACGCCGCGCTG 70906 30 96.7 31 .............................T ACGACGACCGGTACAACGACGGCGGGGACCG 70845 30 96.7 31 ..........T................... CTGAGCTGAGCCTCAACGTCGCGCTCAACCC 70784 30 96.7 31 .............................G CATTAGTAATGTTTTGGATCTTGTTTGAGTT GT [70765] 70721 29 90.0 0 .........G...........-.......T | ========== ====== ====== ====== ============================== ================================ ================== 46 30 97.4 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : AAAGGAGCAAGAAGACCCGGCAAAGCCAGCTGACCAGCGGTGTCATGCCTCAGCGAGCCATCGCCTACAACATCCTCATATGAACCAGCACTCCGCAGCGCATCGAACGCGCTCCCGTCCTTCTTCTGAAACCCCGGGGTTGCCTTGCCGACATCGTGTAACCCCGCCCAAAACATGATCAACGATTTAGCGTGGCTGTCGTCGGTGGCCAGCCCCTCCGCGATGACCCTCCGTTGGTTCGGGGCCAAATAGCGATCCCACAACGCACCAGCAACGGCCGCGGTATCAATCAAATGCCAGAGCAATGGATACGGTCTCGGGAGATGGTTAGACTTGCCCCAGATCCCAGCATCGACCCCGTCATGGTCGACCCCCAATTCGACCCCCTCCATTCGTACCCGCTCGGCAAGGGCATCAGCATGCAACCACAGCCGTACGACACCACGACTCGACCGACGCAAAACCGCGCCCACGGCTGATAGAAGCGCAGGTCACGAAGT # Right flank : CCTCGACGCTGTCCGCGCCGGTTACACCAGCGTCGGCCTGGCCGTTTCTGAAAGTCCTGGCCATACAGTAAGCGGCGTTGTGATTGGCAGGTTGTCGTGCTGGGAGGGGTGTGGGCGCGGTGAGGACAGTTCAGGTTCGTACGTATCTGGTGCGGGTGGGTCGGTTGGATGAGTGGGTTGATGCGTGGCGGAGGTTGATTGTTCCGTTGCGGCGGGAGTTCGGTTTTGAGGTGCACGGTTCGTGGGTGGACCGGGACGCGAACGCCCATATTTGGGTGCTTTCCTACGAGGGGGGTCGGTCGTTCGCGGAGGCTAACGCGGACTATTGGGCGTCGCCGCAGCGGGAGCGGTTGGGGGTGAATCCGGCGGAGTTCCTGGTGGGTGAGCAGGTCCGTGAGGTAGAGCAGGTCTTGTAGCTACTCTGCTGCCGGTAGGCGGTGGGCGGCGCGTTCGTCGGGAGTGAGGGTCCGGACGACTCGGTGGCGTGCCGCGTGCAGGAG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 82445-84488 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911400.1 Salinispora oceanensis strain CNT-138 B173DRAFT_scaffold_0.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 82445 28 100.0 32 ............................ CTGATCCTCGGCGGCCTCGCCGACGCCAAGGA G [82462] 82506 28 100.0 32 ............................ GCGAGCGCCAGAGTACCGGCTGCTGCATGCCG G [82523] 82567 28 100.0 32 ............................ CTACTGCTACTTGTCTTGGCCAACCGTACGGA G [82584] 82628 28 100.0 32 ............................ CCGGCCTCGCCGGCGCGCTGGAGGACTGCGAC G [82645] 82689 28 96.4 32 ...........................C TCGACACATCACAAAAAGAGGCGATGTCCAAC G [82706] 82750 28 100.0 32 ............................ ACGCCGCGTGGGCAGCACGGGGCAAACAGTCC G [82767] 82811 28 100.0 32 ............................ GTCATCAGGACCACGGGTGACGGGGCGACCGT G [82828] 82872 28 100.0 32 ............................ ACGCCGCGTGGGCAGCACGGGGCAAACAGTCC G [82889] 82933 28 100.0 32 ............................ GTCATCAGGACCACGGGTGACGGGGCGACCGT G [82950] 82994 28 100.0 32 ............................ CATCGACCGGGCCTGACAGCCCACAAGTCCAC G [83011] 83055 28 100.0 32 ............................ GAAACCCACAGTTGGGCGGCCCGTAGGAACGG G [83072] 83116 28 96.4 32 ....C....................... CCCCGCTACCCGCAGCCCGACGACCCGCGCGT G [83133] 83177 28 100.0 32 ............................ CTCGATGCCAACGCACCGAAGGCGTTGCGGGT G [83194] 83238 28 100.0 32 ............................ TCGGGCGCGGTGTGCCGAGTGTGGGTGCCCAA G [83255] 83299 28 100.0 32 ............................ GTGTGTGCCTTCGCGGCACCCGTAGCCGCGGT G [83316] 83360 28 100.0 32 ............................ TGCTGGTCCAGCCAGGTCGACGCGCCGCGCTC G [83377] 83421 28 100.0 32 ............................ ATCCGGGGGATGACGCTCGTCGGCGCGTATGT G [83438] 83482 28 96.4 32 .C.......................... GGCTCGACACCCGCACCAACCAACCATCAGAA G [83499] 83543 28 100.0 32 ............................ GGGAACGCGGCGGCGAGGGCGTCGGTGTCGAA G [83560] 83604 28 100.0 32 ............................ CCGGCTTCGTGCCGCTCGGAAGCTGGCTTCGC G [83621] 83665 28 96.4 32 ....C....................... GCCATCGGCTACGCCTCCACCGTCGTCTCCTC C,G [83667,83683] 83727 28 100.0 32 ............................ GACCCGAAGGCCATCAGCTTCCCGGTGGATAT G [83744] 83788 28 100.0 32 ............................ CGGTGGGAGTTTGAGCGGGCCGTGCTGGCGTC G [83805] 83849 28 100.0 32 ............................ CCGAACGCGCCGGACCCGGCCACAGCCGCCAC G [83866] 83910 28 100.0 32 ............................ ACGGCATTAAGGCCGTCCTCCTGGAGCTGCTC G [83927] 83971 28 100.0 32 ............................ TCCGGCGGGGCGCTGGCGGGCACCGGTGCCGC G [83988] 84032 28 96.4 32 ......A..................... GCCGCTCAAAGACCACCGCCGCCTTACTCGCC G [84049] 84093 28 100.0 33 ............................ GCACCTCCCGGAACTAGCCGGGGCTCACCATCC G [84110] 84155 28 100.0 32 ............................ ATTTCCGAGCGCGGAGCGTCCAGGCCGAATGT G [84172] 84216 28 100.0 33 ............................ GAGTGGCCGTACGCCAGGGCGGCGCGGTGGACA 84277 28 96.4 32 .....................G...... CGTCGCCCGGCTCGGGTTCGCCGAGAGCGTCC 84337 28 89.3 32 ..........T............T.T.. GGCGTATGCGGGGCCTACGCAACGGCGGTGCA G [84354] 84398 28 96.4 32 .......................T.... CCGAGCGGGACCAGGCCCTCACCGCTGCCCAC 84458 28 96.4 0 .......................T.... | CC,G [84468,84477] ========== ====== ====== ====== ============================ ================================= ================== 34 28 98.8 32 GTCCTCCCCACGCACGTGGGGTGCTCCG # Left flank : CACCGACATTCAGCGCCTACTCGACCCCGACAGCACACCCAAACAGCGGCAACCTGCGGCCGATATCACCTCCCTCTGGGATCCGGAGATGGGAGCGATGCCGTCCGGAGTCAACTACAGCTCAGACCCCTGGGACTAGCATGGCTTCCCTTGTCGTCCTGGCAACAACGGCCGTACCCGATCGTCTACGCGGTGCACTCAGCCGCTGGATGATCGAAGTGACACCCGGCATGTTCGTCGGAACCCTCTCAGCCAAAGTCCGCGACGAGCTATGGAACGCAGCAAGCAGCGTCGTCGGCGACGGCGCCGCCGTCCTCATCCACCCAGACGACACCGAACAAGGCTTCTCCCTACGGACCGCAGGAGAACGCAGACGCCGCCCGGTCGACTTCGACGGCCTTACCCTGGTCGCGATGAGCCCCCAAGAGCACCAAGGCAACCCTCCCACCCCGGACGAGAGAATCTGGCCGGACGGCTGGTAAAACCGCAGGTCAGGAAGT # Right flank : GCGTTCACGGTGAAGGCCGCAGACTTGATGGCCGTCCTCCCCACACAGGGTTTCTGGAGGCGACACATGATCGAGCCTGTGCAGATCTGCTGGGCGCCGGCGGGTGAGAGCATGCCGTCGCTGGGCTCCCACGCCCTGGCCGCCGCGCCGATGGCTCTGCGGACTTCTGCACCCGCGGTCCAGCCACCGCCGGATCGGACTCGCCTGAATCGCTCACCTTATCGGTGGCAGGTCCGCGGTGGTGCTTGGTCCTGCCACCGATCAGCGAACGGCCACAGTCGAGTCGAAGCGGTCCGCCACGTAGTTCAGCATGCTGGTCAGCTCCTGTGCGCCGACCGCATGCCCGGCCGGACGTGGCCCGTCGATCGGTAGGGAGCCGACATGGGCCCACTCCAGCCGTCCGTCGGGGCCGACCCGGCTCCTGGTCCGGCCCTGAGTGTCCGGGTGCAGGCAGTACGGAATGTCCAACAGGCCGCGCCGGAAGGCGATGTGCAGGGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //