Array 1 9356-10788 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFKC01000023.1 Escherichia coli strain HH-NP023 sequence23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9356 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 9417 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 9478 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 9539 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 9601 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 9662 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 9723 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 9784 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 9845 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 9906 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 9967 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 10028 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 10089 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 10150 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 10211 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 10272 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 10333 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 10394 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 10455 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 10516 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 10577 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 10638 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 10699 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 10760 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCACGCATGGGAAATGAGCGTTGTCAGAGTGCGCCGAAGCTGGTGGAAAAAACATCGGGATGAGTTTTCTTTACTGGAGGGAGAGGCGTTCAGGCTGTGGTGCATTGAACAGCGACAAGATCCGGAGATGGCAAACGTGATTTTAGTCAACGATGACGAAAGTTGCGGGTATTCGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 247019-248267 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFKC01000043.1 Escherichia coli strain HH-NP023 sequence43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247019 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 247080 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 247141 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 247202 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 247263 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 247324 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 247385 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 247446 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 247507 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 247568 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 247629 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 247690 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 247751 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 247812 29 100.0 32 ............................. GCTCCCTATCAGTTGTAATCGATAACGTTGAT 247873 29 100.0 32 ............................. GCTCCCTATCAGTTGTAATCGATAACGTTGAT 247934 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 247995 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 248056 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 248117 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 248178 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 248239 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //