Array 1 526279-525334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWD010000001.1 Listeria booriae strain FSL L7-0527 NODE_1_length_915048_cov_17.431418, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 526278 30 100.0 34 .............................. ACAATTTTTTCTATTTCTAAATACGGTATAAACT 526214 30 100.0 35 .............................. GACGATATGTTGACAACAATTGACATGAAAAATAC 526149 30 100.0 34 .............................. GAAAAATTTAAAACAATGTTAAGCGGTGCAAAAG 526085 30 100.0 36 .............................. AAATGCTGTTTACCGATTACCTTTAGATTTGTCATT 526019 30 100.0 37 .............................. TATACAGATTACAGTAATGTGACGCAATACGGCTGTA 525952 30 100.0 35 .............................. TCACTAACACCTTATATGCAATCTGAATCTTCTCT 525887 30 100.0 34 .............................. TTTGCATCGTAGAATCGGTTTGCGCCGTCCTCTG 525823 30 100.0 35 .............................. ATTAAACGAATTCAAGTTCGGGGATGTAGTTCGTA 525758 30 100.0 36 .............................. CGATTAAGCGGCTATGTCATAAGATTGAAACGGATG 525692 30 100.0 34 .............................. GCAAACACAGAACTTTCTTGGCGCAGTGTCCCTG 525628 30 100.0 38 .............................. CCTATTCGTGAGGGTTCATTATTGATGACATCAATCAA 525560 30 96.7 36 .................A............ ATTGAAGATGTTCCAGAATGTAGAATTTTTGGTGTT 525494 30 96.7 36 .................A............ GGCGTATGCCTACGGCAGCGATGAGGTACAGGTAGT 525428 30 100.0 36 .............................. AATTCTGACGGGTCTATCAATGAATCTGTAATACTA 525362 29 83.3 0 .................A....-.C..G.C | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.4 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTAGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGCGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTAGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTGGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTCAATCGGGTACCT # Right flank : TAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCAGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGTCTCAGGTCGATGTGCTTATTACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCTGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAGGGCGCTGAACATTGCGGTGCTGGA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 134658-136467 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWD010000004.1 Listeria booriae strain FSL L7-0527 NODE_4_length_423357_cov_18.429491, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 134658 30 100.0 37 .............................. ATATAAATTAAAATCATTAGAATTTGATAAAGATTTT 134725 30 100.0 36 .............................. TTTAGAAATTCATTAAATCGCAATTGATTAGATTGC 134791 30 100.0 35 .............................. TCCAGTCAATTAATGCTGGAATTACTGGTATTGTG 134856 30 100.0 34 .............................. GCATGAGAAAAATCAGGGCTATTTTCTCCTTGTG 134920 30 100.0 36 .............................. CCTTCTAATACTTAGAAATACAAATTTACTAATAAC 134986 30 100.0 35 .............................. CCCGCTGTGTTGCTCGCCGAACCATCCGAATATGT 135051 30 100.0 34 .............................. TGATTAGCTTGGCGCTTAGGGAAGTGGTGTTTGC 135115 30 100.0 35 .............................. TCAAGTCATCCCATTTCATTCATTACTTATTTTCA 135180 30 100.0 37 .............................. ACTTGAAATCTGCTCATCTTTCCTTCGCTCCTCTTTC 135247 30 100.0 36 .............................. ACTGTCTACTAGTTGGACAAGTGGAACGCAACAATC 135313 30 100.0 39 .............................. CAACATGCGTCTAAAATACGTTTCATCCCGTCACGTTTT 135382 30 100.0 38 .............................. ATTTTATTCATAGGGGGTAATATTTCACTCCTAGGCTC 135450 30 100.0 38 .............................. GTGTTCACGGCGATTGCAGATGCAGCTTACGGGGTAGG 135518 30 100.0 38 .............................. CCTTGATAGCTGATAAATACATGATTGGATACCTCAAA 135586 30 100.0 36 .............................. ACAAGAAAATACCCGATAAATTAAACCGAAAATGGT 135652 30 100.0 34 .............................. CCACTAGACGAGCCACCTATATTATCGTCCTTAT 135716 30 100.0 37 .............................. AAGATTAAGATGTATGTCATCAGTAATATGATGCGCT 135783 30 100.0 36 .............................. CATGGATTCGATATACCGTGTATTTAAATCGATTTT 135849 30 100.0 36 .............................. GATGATAAACGTGATGATAAGACTGACGATATTAGT 135915 30 100.0 36 .............................. ACAAAAATGGGAATGGCGTGCCAGACTAACGATTAA 135981 30 100.0 35 .............................. CATGTTCCAAAATGGCGTATTCTTTATATTCTTCC 136046 30 100.0 36 .............................. AGCACTCATAGATCAAGACATGGAAATTATTGAACA 136112 30 96.7 35 .................G............ GCAACATAATGCGAAACGTGATACGTAAAGACTTC 136177 30 96.7 34 .................G............ ACAAGTAATGATTTGTAGTTGATTTGGTCGATCA 136241 30 100.0 36 .............................. TCGTCATTTGTTTCAAATTCTGTAATCGTTGTTGGT 136307 30 96.7 35 .................G............ GTGACATATGTCGTCGTTGGCATGATTGAATTAAT 136372 30 90.0 36 A............C...G............ AATGACAAAGGCCAAACGGTACACTTTACAAACCCG 136438 30 80.0 0 A......C.C.....C.......CA..... | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 98.6 36 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGACAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGATATGCAAGGGGTTGATCCTGTTTTTGGTGATTGGCTTGTAAGGTTTGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCAATCTGTTTAGCTACGATTGTTTTGGCAGACAATCTCTGTCTACCAAACAATGTTCGTAACCAGTATACGCTACTTTCCAGCTCTCATAAAAAATCCTCGCGATAATCATTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGACCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCAATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 51106-50285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWD010000007.1 Listeria booriae strain FSL L7-0527 NODE_7_length_119914_cov_15.982710, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 51105 30 100.0 36 .............................. ATGAGAACAGGTTTTAAAAAAGCATTAGAATCTCCA 51039 30 100.0 36 .............................. TTGATTTCATAAATGGGTAACAAATTTTTGCATTAT 50973 30 100.0 35 .............................. AAGTTATATGCACCTCTGAACGCCGCTCGTTCAAC 50908 30 100.0 36 .............................. GCAGATACGAAAGAACAACAACGTTATTGGAGAAAG 50842 30 100.0 35 .............................. AGCATCATCGAATACGAATAGTACGTTAGCTTTGC 50777 30 100.0 36 .............................. GGTGCTGACAAAATTAAAGTAGTCGCAGATTATTTT 50711 30 100.0 37 .............................. CTCCTCCTTTATGACTGGCTCTTCATTGAACGCATTT 50644 30 96.7 37 ....................T......... ATCGTGACGTACACGAAAACTAAAACTGGTAAGAAGA 50577 30 96.7 36 ....................T......... CAGCAACTGCAATACAACTCACTACGACTATTTTTC 50511 30 93.3 36 ...............G....T......... TTTTTAAAGTATAGTAAAATCAATTCTTCGGACTTT 50445 30 90.0 35 CG..................T......... CCGCGAATATTCGTCAAGTGTATCAGCTGATCAAA 50380 30 100.0 36 .............................. GGAGCAGTTGCATTTGATGAAGAACATGCCTATGAA 50314 30 80.0 0 .................C.AT...A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 96.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGATTAGGATGGCTTTCGAGAAGTAGAAAGAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : CCCAAAGAAGGAGAGATACCAAATGACTATGGAAAAATTAATACTACAAGTCACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAATTCCACTCGACGTATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAATGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAACG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //