Array 1 26-520 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JABCMH010000252.1 Vibrio parahaemolyticus strain Vb2209 LGFLNDPF_136, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	==============================	=======================================	==================
        26	    30	 100.0	    37	..............................	CCTCTGTATTTGCTTGTATGCATATGCTGAAAAATTT  	
        93	    30	 100.0	    36	..............................	TCTCCTAAAACCTTCAGATTTCAAGTAATAAAGCTG   	
       159	    30	 100.0	    35	..............................	AGTAGACCGAATCAGTTTTCTTTTCGAGGGATTTT    	
       224	    30	 100.0	    37	..............................	TGAATAACACCTTTGGCTCTAGTTAAACTAGAGCTAT  	
       291	    30	 100.0	    39	..............................	TCATCAAATTTGGGGCGTTTTTGGCGTCGTCGTTGTCTC	
       360	    30	 100.0	    35	..............................	TATTTACGACTATCCTACAGTACTTTATACTGACG    	
       425	    30	 100.0	    35	..............................	GGAATACAAATGGTAAAAATAATTGATTTCATCAA    	
       490	    30	  96.7	     0	...........................T..	|                                      	G [516]
==========	======	======	======	==============================	=======================================	==================
         8	    30	  99.6	    36	ATTTACATTCTAGTATAGTTCTATTTGAAG	                                       	       

# Left flank :   GCTTGGGGTGGAACAATTGTTGCTAA
# Right flank :  TGTAAAAAAAGATATGAAAACAGAAAAATACTTTTGATATGTTTTTAAATAAGATTTGACTAAATTATATACTAAAAAAGGGCATAAGTATAGTGTGGAATTTGATAACGGCTTTTAATATTAAGTTTTCAAGGTTCAAATGAAAGCTAGGCGGCAGCCTCGGAAAAAAC

# Questionable array : NO	 Score: 3.24
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTTACATTCTAGTATAGTTCTATTTGAAG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:76.67%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [21.7-81.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.41,0.27   Confidence: LOW] 

# Array family : NA
//


Array 1 574-16 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JABCMH010000647.1 Vibrio parahaemolyticus strain Vb2209 LGFLNDPF_324, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	==============================	=====================================	==================
       573	    30	 100.0	    36	..............................	AAGCCACAGCGTGTAAGGAGATGATAATGTAATGGG 	
       507	    30	 100.0	    36	..............................	TCAATGGTTTCAGGCGTTTTTATCGTTTTTCTTCAT 	
       441	    30	 100.0	    37	..............................	TTCTTTTTTCAATAGTTTTATGAAGCAATGTGAAATA	
       374	    30	 100.0	    36	..............................	GGGTCATATTCAACAAAATTGACCTTAACCTTTTTA 	
       308	    30	 100.0	    36	..............................	GGCAAAAGAAAGGTTTGGAGAAGATAAAGCTAACGC 	
       242	    30	 100.0	    36	..............................	TTTTGCAAGGATTATTAACAGTAATATCTCTTAGAA 	
       176	    30	 100.0	    36	..............................	AAGATTATAAAGCAGCAGTAGACTTTGCTTATAATT 	
       110	    30	 100.0	    35	..............................	AAAGTAAACGGAAACGCTAAAAGTGTCAAAAACTT  	
        45	    30	 100.0	     0	..............................	|                                    	
==========	======	======	======	==============================	=====================================	==================
         9	    30	 100.0	    36	GTTTTTAGCCTACCTATAAGGAATTGAAAC	                                     	       

# Left flank :   AATTGAAACATCGCAAAGGCTTCAACAGCCTCCACGAATACATT
# Right flank :  CTGGGACGAAGAAAAT

# Questionable array : NO	 Score: 9.26
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTAGCCTACCTATAAGGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.80,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [15.0-45.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,9.64   Confidence: HIGH] 

# Array family : I-B [Matched known repeat from this family],   
//