Array 1 32356-30249 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNJ01000036.1 Salmonella enterica subsp. enterica serovar Braenderup strain 190 NODE_36_length_40938_cov_1.52052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32355 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 32294 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 32233 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 32172 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 32110 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 32049 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 31988 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 31927 29 100.0 32 ............................. CTAGGCACTAACTCGCAGTATCACTCCCTGCC 31866 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 31805 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 31744 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 31683 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 31622 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 31561 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 31500 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 31439 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 31377 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 31316 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 31254 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 31193 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 31132 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 31071 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 31010 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 30949 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 30888 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 30827 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 30766 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 30705 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 30644 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 30583 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 30522 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 30461 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 30400 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 30339 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 30278 29 89.7 0 A...........TC............... | A [30251] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8487-7361 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNJ01000103.1 Salmonella enterica subsp. enterica serovar Braenderup strain 190 NODE_103_length_13800_cov_1.65465, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8486 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 8425 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 8364 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 8303 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 8242 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 8181 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 8120 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 8059 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 7998 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 7937 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 7876 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 7815 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 7754 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 7693 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 7632 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 7571 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 7510 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7449 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7388 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //