Array 1 11371-16215 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRO01000026.1 Actinomadura livida strain JCM 3387 sequence26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11371 29 100.0 32 ............................. TCACCCCGCCCTCCGGGACGCGATGAACGCCG 11432 29 96.6 32 ............................A CCGATCTTGCTGGCGAGCAGGTCCACGTCCGC 11493 29 100.0 32 ............................. CGGGCAGCGACCTGAGCGGGCGCCATGCCCGG 11554 29 96.6 32 ............................A CCATCGCCCGCACCGTCGGTTCCGCGTCCGGG 11615 29 96.6 32 ............................T CAGGCGGCCGAGCGCTACCTGGAGTTCCATGC 11676 29 100.0 32 ............................. CGCGTTCAGCGACACCGCGGGCCGGTCGTGGA 11737 29 100.0 32 ............................. CGGAGCCCGAGCCGGACATCGAGGGCGAGGCG 11798 29 96.6 32 ............................T CCCCGCCGCCCGCTGAACCGTCGTCATCTTCG 11859 29 96.6 32 ............................T CTCACATGCGATTCATCATCACCGTCCTGGCG 11920 29 96.6 32 ............................G GTGAAGGTCGCGACGGGCGCGGCCGCGGCGAC 11981 29 96.6 32 ............................G GAACCCGCCGCGAAACCGGCCCCGGCGAAGCC 12042 29 96.6 32 ............................G ACCATGATCGCTTGACGGCCCCGAACATTTCC 12103 29 96.6 32 ............................G ACCCACGAGGCGTACGGCGCGATGCGCGCGAT 12164 29 100.0 32 ............................. GCCGCGTGGGCGTCGATCAAGAACGCCGTGAT 12225 29 100.0 32 ............................. TTCACGTAGGCCCAGTACCAGCGCAGCGCCGA 12286 29 96.6 32 ............................G CAGGCGCTGTACGGCGAGGAGGTCGCCGCGTG 12347 29 96.6 32 ............................G TCCACGCCCACGCCGTACTCGCGGTGCTCGGT 12408 29 96.6 32 ............................T CCGGCAGTCGTTGCAGCGCACCGCCGACACCA 12469 29 96.6 32 ............................T AGCCGACCTTGCGTTTGGGGACGACCAGGCCC 12530 29 96.6 32 ............................G CCGGGGATCTTCGCGGCGACGTACGAGCGGGT 12591 29 96.6 32 ............................T ACGCATACGGGCGAGGCTTGCGGAGAGTCTTC 12652 29 96.6 32 ............................G CTCAAGGACCGCGGGTTGTCCAGTCCCGACAT 12713 29 96.6 32 ............................G CGCGCCGACCTCGCGCACATGATCCAGCTCGC 12774 29 96.6 32 ............................G CCGCCATGATCGCGGAGGCCGCGACGGATTTT 12835 29 100.0 32 ............................. GCCCATCACCGCCCGGTCGCGACGTCGGCGAT 12896 29 100.0 32 ............................. ACCGCCCGCAGCAGCCGCACGCAGTTCGAGCT 12957 29 100.0 32 ............................. GGACCTTGGGGTTCATGTTCCACGCGTAGAGA 13018 29 96.6 32 ............................G TGGGGCGGGTACGTCTACAGCTCGGACCCGCG 13079 29 96.6 32 ............................G CCGCAGGTAGACGCATTCTGCACGTGCATCGG 13140 29 100.0 32 ............................. CCGAGCGCCTCGGCGAGGGTCTCGGAGTGCAT 13201 29 96.6 32 ............................G GACGCGGGCGCGGGCGCCGTCGAGTTGGAGGC 13262 29 96.6 32 ............................G AGGTCCCACAGGCCGCGCAGGCGGTCGACCTG 13323 29 100.0 32 ............................. TCGCACGGCGTCAAGGCGTACACCTCATGGGC 13384 29 96.6 32 ............................T GGCTATGAGGAGTGCACGGTGACGCTGTTCCG 13445 29 96.6 32 ............................G TCGTTGCCGGAGTTGTCGAACGTCCACGCCGA 13506 29 100.0 32 ............................. TGCCCCTCTCCTGGCCGTGGCACCCACACCGA 13567 29 100.0 32 ............................. TGGGTCGAGCTGACTGGGGACCTGCCGCGGTA 13628 29 100.0 32 ............................. ATCACGAGCGAGCCCGCCGAGGACGTCACCAT 13689 29 100.0 32 ............................. CTGGCGATGGCCGCGAACGCGACCCTTGCGAC 13750 29 96.6 32 ............................G TTCTCCGGGTCGCCGGGGGTGCGGGTGGTCGT 13811 29 100.0 32 ............................. GATGCGCCGGGCTTGGACCTCTGCCCGCACAG 13872 29 96.6 32 ............................G ATCTCTGTCACGACACCTGCGGTTGTGAAGTA 13933 29 100.0 32 ............................. GGTGGCCACAGTGTTCATGCTGCGGCGAGCCC 13994 29 100.0 33 ............................. CGGTGACGGTCTCCACCCGGTAGCCGGTCGGGC 14056 29 96.6 32 ............................G GGACGCGGCGCTCCGGGCAGTACGGCGGGAAC 14117 29 96.6 32 ............................G CGCAGACCATGACGAGGCCGCTGATGTTCTTG 14178 29 96.6 32 ............................G CCGGTAGGGGCGGCGGTCAGGCGGCGTCGGCT 14239 29 100.0 32 ............................. CCGACCCGGGATTCCCGGCGCCGGTCCCCCCG 14300 29 96.6 32 ............................G GTCGGCCGGTCCATGGAGGACGCGTCGCTGGA 14361 29 96.6 32 ............................G GCATAGCGGGAACGGCCCGCACAGAAGGGATC 14422 29 100.0 32 ............................. TCGACGACGGTCGTCTTCCCGTTCTGCCTGGC 14483 29 96.6 32 ............................G GCGTCCGCGCGTGCGCTGCCGTCGGAGGGCGT 14544 29 100.0 32 ............................. TTCGAGGAGACGAGCTGGTGGCGGATCGAGCC 14605 29 100.0 32 ............................. CGCACCGGAACGCAGGGCTGGTCATGGGGCCG 14666 29 96.6 32 ............................A GGGTCAACGACCCTGAATGGTGGGGTGATGAG 14727 29 96.6 32 ............................T GCCATCAGAGGTTCTTTACCTTCCTTAGTTCA 14788 29 100.0 32 ............................. ACACCACTTTGTGTGTGGACACATGTGTCACT 14849 29 96.6 32 ............................T ACTGCAGGAATGACGCTACTGGGCGTGAAAAT 14910 29 96.6 32 ............................G CGCTTGAGCCCGTACCGGGCCAGCACCGGCAG 14971 29 100.0 32 ............................. TGGACGTGCGCGGGACGGACGGGTCATACGTC 15032 29 93.1 32 ................A...........T CGGAGGGGATGTTGACGCCGGTTGTGTGGAGA 15093 29 100.0 32 ............................. GAGGCCGGCGAGGACATCTCCGTCGAGGACGT 15154 29 100.0 32 ............................. GGGCGGCCCGAGTTCGCCGGGCTCGCGGCCGA 15215 27 93.1 32 ........--................... TTTTGCCTTCTGAGCTGGGCACGGTCCCATCG 15274 29 100.0 32 ............................. CGGTACACCCGGTTGGTGATCTGCGCGCCGCC 15335 29 96.6 32 ............................A CTTCCGCCGAACTCGCGGATCCGATTGCGGTC 15396 29 96.6 32 ............................G ATGTCCGTGACGGGCCACCGTTCGACGGGGGC 15457 29 100.0 32 ............................. CCGATCGATGCTCAGCATGAGCACTCGCAGGA 15518 29 96.6 32 ............................G CCGTCGCGGATCAGCTCCGGCCCGCGCCGCTC 15579 29 96.6 32 ............................T CTCGGTAGTTGCTTCGCTACGGGCTGTATGGT 15640 29 93.1 32 ....................T.......G TAGACCTTCGACGCGCGGACCGTGACGACCCG 15701 29 96.6 32 ............................G GGGAGACTGTGTGTCTCCCCTGCTCTCCCCCA 15762 29 93.1 32 ....C.......................G GTCTCCTTGATCTACCCCCGGATCCCCTGCTG 15823 29 100.0 32 ............................. CCCGACCGCCTCGCGTCCCTGTACGGCGCGCA 15884 29 96.6 32 ............................T CCCGCATCCTCCAGCAGTCGCTGGTACTCGGC 15945 29 96.6 32 ..........................C.. GTGTCGCTGTCCGGGATGTCCTCCCGAAGCTC 16006 29 96.6 32 ............................G GGCACGCCGTACGTCCTCGTCGCCACGACCCA 16067 29 93.1 30 ..............G.............T TTCTTGCAGCAGGTTGGCGCTGCTCGTTTC 16126 29 93.1 32 ........T...........A........ GGCCGCAGCGACGCGCAGGTCAACGTGGACAC 16187 29 86.2 0 ........T...G...T..........T. | ========== ====== ====== ====== ============================= ================================= ================== 80 29 97.4 32 GTCGGCCCCGCGCACGCGGGGATGGTTCC # Left flank : CGGTACCGCTCTACCGTTCGTTGATCCCAGGTCAAGCCCGCAGCAAGCACACGGGCCGCGCCAGCTGCATCCATGTGCTGGAACGCCGGAGTCGCCTTGCCGAAATCATGTATCCCGCACAGCCACGCGAACAGCCGGCGGCCCCCGCCATCACCCGCAACGCCGTCCAGCATCTGCCGTACTGATGGCGCCAAATAGTGATCCCACATGAGCTCGGCAACGGCCGCCGTGTCCAACAGGTGCTGTAACAGCAAGTTGGACCGGCCGCCACCCTTGCCCGCGCTCTTGCCCCATAGCACTGCCAACGGGTTCTGGACGCTCGACGCCAGCCTCTCGTAGCTCACAACGCGTAAGGTAGTCGTGACCACCGACAAAACCGACGACGCAGAAGCTGCATCGCACCGCAGCGGAGTCCCAAACATTCACAATCCTCGACCATGATCGTCAACCAACCGAATGAAAACCGCCCCCCTCGCCGATAACGTCGCAGGTCAAGAAGC # Right flank : CTGGACGACGGTCAGTCGGGATTTTGAAACGGGACGGGATTGTTAGTTGGCAGCGGTGGGTGCGGTGGGGTTGTGGGTGCAGCCATGTGCGCGGTCCCCCGTACTTTATTTGAACCAGCGCAGGGAGATCTATCCCGTGTCTTTGGGACCAGTTTGGAATGCGGGCCGGGCAGCTCTCGATAGCAATGGGCCCATACGCGGTAACGCCGCGTATGGGCCGGAAGGTTGCTACGGCGGGCAGCTATCCCACCGGGACGCGGTAGACATTGCCGATCAGGGTTGATGTCGGCATGTGCAAATGGTTGTGGTCGCCCCTCGGACACGTACCGTTTCCCCAAATTCGGGGGCATGGACGTCACGATGCGATCCGGGTTGAGGTTAGCCTCGACCCGGATTTCTTGTTTGTCCGGGTGGTAGACGAGCCGGACGCCACGCGCCTCGAGATGTGGGTGTGGCCCGCCGTCCACAAGCGTGTAGCTGCGAGGAGGACGGCCGCCGAG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 304248-304500 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRO01000005.1 Actinomadura livida strain JCM 3387 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 304248 36 100.0 36 .................................... TTGCATGATGCCCTTCCGAAGTACGTACAGGATAGG 304320 36 100.0 37 .................................... ACGCGCTGATCGTCACCCCGCTTGGTCCACCACTCGA 304393 36 100.0 36 .................................... CGCATGTCCGCTGCGTCATGTAGCCTCCTCTCGACA 304465 36 97.2 0 ...........T........................ | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 99.3 37 GTCGCAGCGCTCCACAAAACCGCATCGGATTGAAAC # Left flank : GCTATGAGAAGTCGGGGGCGACGTGGAAAACTGGCAGGGTGCGTGGGCCACGGCGGAGCACCCAAGCCGTCGGAAGGAACGATGGGCGATGTGATCGACATGGTCGGCGAGCTCCGCGTCCCACGCCGGTGGCTGCGTCCGACCGGCGTCGGCCGCGGGATCGTCTGTGTCACCATGTTCGTCCCTGGCCTGGATGGCGTGCATTGCTGCCTCCGGCGCCAGCCGGTCGAGCCACTCCTGACAGGCTGTGCCGCAGTGCTCGGCTGTGTCGTGGAGTCGGCGACACCTCATCGTGTTCTACCCCCGCACGTGGCCAGTGCGCCGTCATTCGACCATTCAGTAAATTGCGAAGAGGTTGGCGCACACCCTCAAAAGCCGGTCTCACCTGCACAAACGTCGCCCCGAAGATCATCTCCAGCACCTCTCCAAGATCGCTTGCGAGGGGATTGGCGCATGATCTTGCAAACCCGCAGGTCAGACCCCCCCTAATTTGGGGTACT # Right flank : CGTTGATCCGCTTCTGCAGCTTCTCCTGCTCCAGGGCTTGATCAAGTTCCCTGAGTGTCCGGGTTGTTGGTGATGCCCAGGATCGGGAGGGCTCGTTCTGGCTGGTCGCGGATTGCTCGGGTGGTCTTGGCGATGTTGGTGGCTTTGAGGGTTTTGAGCAGGCCGATGGCGAGGTTGCGGAAGGTGGCCATGGCGCGGGGTGCGGTGCCGGTGTGGAGGGTGGAGGCGTCCTCGGCGTAGGTCACGTCTCGTACGTGGTGCAGGGCCTCGACGGCCCAGTGGCCGCGGACGGCGGCAGCGGGTTCGGCCGGGGTGGCCTGGTGGGCGTCGAGACTGGTGACGGCGTAGACGGTCTCGCGGCTTTCGCGCCCGCCGGTCTGTTTGCGGCGTCGGTGGACGCGGAGGGCGAGGCGGCCGTGGGGAAAGGCGATCCCGCCGAGTTCGTCGGAGATGCCGCAGGTCTTGATCGAGCGGGACTCCCGGCGGCCGTGTCCGGCGGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCTCCACAAAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 306421-306669 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRO01000005.1 Actinomadura livida strain JCM 3387 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 306421 36 100.0 38 .................................... GCCAGCTCTACGACGACAGCCCGCATTCCATCTTTCAG 306495 36 100.0 38 .................................... CCAAGGCCTTCGGCCTGGCCGTCGTTGAGGACGTCCCG 306569 36 100.0 29 .................................... TCGCGCGCAGGGGAGCTTGTTCTTGTTCG 306634 36 97.2 0 ...........................A........ | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 99.3 35 GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAAC # Left flank : GCAAGTTGGCCAAGCGCACGGACCACGGTCACCTCCCAGGGGGCAGCCTCGCTCAGGCATCGGTGTTTGAACAGCAACGAGAGTTGGAGTGGTCGTGAGAGACTGGCTGGGTGCGCGAGTTCCGATCTACGTACCGCAGACATTCGCGGGACGGTGTTGCCTATGCGGCCGCCCCGATCCGGTGTCGGTGGCCGGGTGTGGATCTCTTGGCCCTGTCTGGGCTGGTCACCGTGACAGAGTTGCCCGTAGGATCTGCTGCGGCTGCGAGGTCGCCGGTGCCTGTTCCATCGTGTGCTCCTGTATCCACAAATGGCCTGGCATACCGTTGTCCGGCCATTTCAGAGAAGGCCGGGAGGTTGGCGCACACCCCGAAAATGCCTTCTGACCTGCGTAAACGCTACTCAGAAGATCGTCTTCGGGGTGCTTTCAAGATCGCTTGCGAGGCGGTTGGCGCATGATCTTGCAAACCTGCAGGTCAGACCCCCATAATTTGAGGTACT # Right flank : CGGAAGAGCGACTGTGCGGGTCGCAGAGGTGCCCCCGCCGAGGTCGCCGCGCTGAGAACGGGACTCCCACGGAAGCTGGTCGGCCCCGCCTGAAGGCGGCGGCTGCGATTGTGGCCCCGGAAGTGAGTCGGTGAGGGTTTGCTTTCAACCGCGTCTGTTTGCCGGAGGCGCTGGCGTCCTGCTCGTCCTACAGCGGGGTAAGCGAAACGGTTCGGGCGGCCTCGTTTCGCGCGGGGCGGTCGAGGGCCGTCTTCACCCGCCACACGCAGTGCGGCCAGCGACGCGGTGTTGACGGCTGGGCCGGTGTGCGTTGGCAGGGCGGGGGGCGTGGGCCCCGGCGGGCTCGAGATGTAGACGATGATGCGCGCGAAGCATGCGGCTCTCGGCCTTCATCTCCTCGACCGTTGGAGAGAACCGAATCAGAACCCCGGGATGGCGGTCAGCGCGCGACCCATGCCGGGCGGGTGAGGAGCCGTTCTGCAGGTGCGGGAGCGGTGCGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 3 309785-310468 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRO01000005.1 Actinomadura livida strain JCM 3387 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 309785 35 100.0 39 ................................... CTAGGGCACGGGCGGCGTGTAGCGGTCGATCCGCTCGAT 309859 35 100.0 35 ................................... CCTCCGCGACGAGCCATGGTGGCTCCTTTCTTCCT 309929 35 100.0 40 ................................... CATGTCGGCGGCGTTCGAGGCTGCGACGACCACGAGTGCG 310004 35 100.0 33 ................................... CTCCTCCGCCTTCTCTGCGGGGAGCGGTGTCGA 310072 35 100.0 39 ................................... CCGGAGATCGTAATCGTGCCATTGGCGTTGACAGATTCG 310146 35 100.0 38 ................................... CAATTCAGCACGAGTCTCCTCTTGTAGAACCAACGACT 310219 35 100.0 36 ................................... CCTTGCGCTCTGCTTCTCGGAGAGCGTCGACCTGGA C [310234] 310291 34 97.1 36 ..................-................ CACGCTGAGCCTTGCGGCCACGCTCGCCGTGTTCTA 310361 35 100.0 35 ................................... CTCACCGCGACGGTGGTCACAAGCGAGGATGCTGA 310431 35 100.0 0 ................................... | AAG [310461] ========== ====== ====== ====== =================================== ======================================== ================== 10 35 99.7 37 GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAA # Left flank : AGGAAGGCGCGCTGGACGATGCGGTCACAGATGGTCGGCAAGCCCCGCGTCCGAAGCTTGCCACCCCGCATCAGCCGCACGGGCCGCAGTGGCTGGGCCTGGTACCTCCGCTCCCGCAACAGCGCTGCCAGTGCCGCCAGCCTGGGCCCGACCTCACGCCCGAACACGGCCGCCGAGACCCCGTCCGCCCCGGCCATGCCGCTGCCCGCGGCCACCCGAGACCAGGCCGCCCACAGCGCCCGGTCGCTGGCCATCCGCTCGACCAGCCGCGACGCCGGCCTCATCTCCTCGCGTGTCCTCATGCCCGTAACCGATGGACGAACGCCGTTCCAGGCCATTAAAGAAGTGCTTATAGGTTGGCGCACACCCTCGAAACATCACTTGACCTGCGCAAACGCCCTCCTGGAGATCATTTTCGCGCCTTGCTCAAGATCGCCGCGGGGGAGGTTGGCGCATGATCTTGCAAACCTGCAGGTCAGACCCCCATAATTTGAGGTACT # Right flank : ACGCGCGGTCCCGTGGTCGGGGCCGCGCGTTTCGATGCGGGACGTTCGTCAGTGGTGTGGGGGTGGGGCGGGTGTTGAGAAGTGGGGTGGGGGTGCGGCGTCGCCCTCGCCGCGGGGTGAGTCGGGGCCGCAGGCGGGGCAGTCGGGCTGGGGGTCGGCGTCGATGGGGGTCAGGGCGGGGCCGGCGAGGTCGATGAGGGTGTACGGGCGCGGAGGGTGCCAGCCGGTGAGGAGGTTGAGGGCTTCGCCGAGGGCGATGCCCGCGATGGTCTGGTTGAGGAAGATCACGCTGGGTGTCGGTTCGTCGGGTGCGTCGCGAAGGTAGCCCGCGCTGCGTTTCGCGGCCGTGAGGACCGGGTCGAGTTCCATCGACGCGGCCGCCGGGTCGTACCCGGACAGGCAGAGCAGGCACGGGCCGCCGGGCATCACGGTCGCGACATGTCCGGAGACGTCGAGTGGGCCGGTCGGCCTCGTGGTGATCTCGGCGCCGGTGTCGATGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGCGCTCAACAAAACCGCATCGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 4 326316-325680 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRO01000005.1 Actinomadura livida strain JCM 3387 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 326315 30 100.0 39 .............................. AGGGCGAGGGCGGCCGGCTGGTTGTAGAGGCTCGTCCGG 326246 30 96.7 34 ....................A......... GCGATCTGGGTCCAGCAGATCCGGCCCGTCCCGG 326182 30 100.0 36 .............................. GCGGACGTCTGGACGTCTAGACGCCGGGACGCCTAC 326116 30 100.0 39 .............................. TCTGCTGGGTCGTACATGTTGATGATGTGTCCTTGTCCG 326047 30 96.7 40 .C............................ GTGAGCACCGGCTCGGGTGTGTTCTTGTTCGCCAGTGCGT 325977 29 90.0 39 .............GG-.............. TTCAGCGTCTTCCCGAGCTTGTCCGCGGCCCCGGCCCGT 325909 30 100.0 37 .............................. ACTCAGCTCTTGAGCTGATCAGATACTCGGTTGAGTC 325842 30 96.7 34 ................T............. GGCCGGACGCCCCGCCCCCGGGGGAACCGCTGCG 325778 30 80.0 36 ...T..C...T....G.........A.G.. GCGTCGGTCGGGCGTCCAGGTCAGATTGACGTACAG G,G [325755,325771] 325710 30 80.0 0 ............T..G......AG....TG | A [325682] ========== ====== ====== ====== ============================== ======================================== ================== 10 30 94.0 37 GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Left flank : AGCGGCGGAAGAGCTATGCCCTCTCAAGATCATTTTCCCATACTGTCCAGCCCGGTGGCAATTAACCGATTCTCTTGCCAGCGCGTCGACGGTGTCGCCTCAATGGGCCCGGACGATGATCAGACCGGTTGGAGACTCGCCGCTGTGCGTCCGATGGCCTTGGGCGTTATGGTCCTACGCGGGTTCGCAACGAGTGCCGGGGGCATTTGGGCAGGCGTGAAGGCGCATGATCGGACGACTCCGTTATCAATTCGGACTCTTGGCGCCGATCAGGCAGGCAGGTGACGAATTGGCGACAGCGGCGAAGGGAGCTGACTGTTGTGACCATGGTGGAGCCCGCGACGACGTCTTGCAGGATCTCGGCCATCCAAGCCGGAGGCGGAGTTGATCAGGTGGTTTTCAGCGACACGCCGGGGCCGACAGCACAACCGGCGGATCGCTGCAGATTCGGCTCTGGCGGGGCGGTTCTTCCCTCTATCCACCTGGCGCTTTACCGTGGG # Right flank : TGCGCGTGCTCGGCGTGGTCTTTGCTGCTCGGGGAGTATCGATCCGTTTTGTGCTTCGGACGTCGTTGGGGCCGGCCGCGTCGAAATCTCAGGAGGTCTCGGCGGGGAAGGGCTCGTAGGTGCTGGAGGCGTTGTCGTAGTTGAAGGCCGTCCAGCGGTCGGGCTGGATGTGGGCCAGGCGGGCGCCGAGGGCGATGGAGATGGCGACCGGGCCGGTAAGAAAGACAGCGTGTCGTCCGGTGCGGGCGGCGGCCGGCAAGGGAGCGTCGCGCCAGGCTCGGCAGATCTGCTCGACGATCGCGGTGTAGGTCTCGGCGTTCTCGTCCAGGGGGCCGGCGGTCTTCCGGCGGAAGAGCAGGAGGCTGCCGATTCCGTGTTCGCGGCAGGCGGCGCGCACCGGCTGGACGAAGTCGGCACCGAGGTTCTGCAGGTCGATGGCGAGTGCCGCGCGGGACGGGTCTCCGCCCTCGATGCTCTCCACCGGCTCCACGACGAGGAGT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 335342-337496 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRO01000005.1 Actinomadura livida strain JCM 3387 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 335342 30 100.0 38 .............................. TTGCCCATGAACGCCTGAACCAGGCAGATCACCCCGAC 335410 30 100.0 36 .............................. CTCCAGCACACCCAGCTCCGGCGACCCGAACAGGTC 335476 30 100.0 35 .............................. CTGCGGTGGCGCAGCATCCTGCGGGTCGACTCGTG 335541 30 100.0 36 .............................. GGCGACAACTGCAGCAGTTGTGGCGTGTAGTTCCGG 335607 30 100.0 36 .............................. GTCAAGGCCGAATCGGTGGAGGACGCCCCGGCCGAG 335673 30 100.0 35 .............................. GTGCCGGTGAAGGTCAGCGCGGCCCAGGAGTGGGT 335738 30 100.0 35 .............................. AAGTAGGCGATCACGCCGAAGCCGACGCTCTCGAT 335803 30 100.0 35 .............................. GTGATGTCCGTGTCGGCGAGCGCGGGCTCCCACGA 335868 30 100.0 39 .............................. TCGGGGTTCATCGGTTCTCCGTGGGGGTGTCGAGCGGAA 335937 30 100.0 35 .............................. GCCCGCAGCCTCTCGGTCCCGCGCCGAAGCTGCGG 336002 30 100.0 33 .............................. CTCCAGACGTAGGCGGAGACGTTGCCGCCGCCG 336065 30 100.0 36 .............................. GCGGCCGACACCGTCAACAACGGGCTCGGGACGCTG 336131 30 100.0 39 .............................. GCCTGGAGGTAGTTGCGCTCCCGTAGCTGCCCGGTCAGG 336200 30 100.0 38 .............................. CCTGATCCTGGAGGTTCATCACCTCGCGGTTGATCCGC 336268 30 100.0 39 .............................. TGGCGTAGGTCCATGATGGACAGCGCGCCCCACAACACG 336337 30 100.0 36 .............................. AATGGGCGCGGCCCCGGCCAAAAGCCCGGTGCGGAG 336403 30 100.0 37 .............................. GCGAGCTCCACGCGAGTGCCGGGCTCGTCCCACTCAG 336470 30 100.0 36 .............................. GTGTCGATCTCGTACTGCCACCCGCAGGTGAACGTC 336536 30 100.0 37 .............................. GCGGAGGCGAGCGAGGCGGACACGCTGTTCGATCGTG 336603 30 100.0 36 .............................. CCCTTGGCCTGGTTGCAGCACCGCCCGCAGGTGGGG 336669 30 100.0 35 .............................. CTGGGGTCGAACGGGTAGGACGGCTTCGAGCCGCC 336734 30 100.0 37 .............................. TTGAACCTGGAGTGTGTCTCCCGGTAAAGATCGCCGT 336801 30 100.0 38 .............................. CCGGCGCCGTGCGCACCATTTCCGACCCGCCCGACGAG 336869 30 100.0 37 .............................. ATCACGTCCGGGTCCTTCCGCGTGATCCGCACCGGCC 336936 30 100.0 37 .............................. CCGATGGAGTCCATCGCGGACGCCTCGTGCGCCGGGT 337003 30 100.0 35 .............................. AGCATCGCCACGATCCCCTCCGGCGCGACGACCGG 337068 30 100.0 38 .............................. GTGTTGTAGTGCAGCCAGTCACCGTCATGGACGAACAC 337136 30 100.0 35 .............................. TTCGCGAGCTCTGGCCTGGCGCCGCACGCGCGCCG 337201 30 100.0 37 .............................. ACCTCGACAAGGGCGTCATCACGGCCGTCCTGGACGC 337268 30 100.0 34 .............................. TTGATCAACTTCGGGTACCACCAGCAGGGCGCCT 337332 30 96.7 35 .....T........................ GCGAAGGCCGACGCCAAGCCCCCCGCGAGCGAGCC 337397 30 96.7 38 ...........T.................. GTAAACTGCCCGCGCAAATCGTGGAGACCCGGTTTCCC 337465 30 93.3 0 ....G.................G....... | GG [337482] ========== ====== ====== ====== ============================== ======================================= ================== 33 30 99.6 36 GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Left flank : AACTTCTCTACCTCGACGCACTCACGCTGACCCGACGATGCCTGGAAGCCACCCCGTACAAGCCCTTCCGTATCTGGTGGTGAGAACGCACCGTGCACGTCATCGTCGTCTACGACACCGCAGCCGAACGAAATCCCCGCATCCTGCGAACGTGCCGCAAGTACTTCCACCACGTACAGCGCAGCGTCTTCGAGGGCCAGGTCAGCGCAGCCCAACTACGTCGCTTCCAGAAGGAGGTCGAAACCCTCCTGGACCTGAGCTACGACAACGTGATCGTCTACACCTTCCCGCCCGGCACAACCCCCATCCGCCACGCCTGGGGCGCCGCCGAGCCGGCACCCACCGACGTCCTGTAGCTCTCGGCCCCACTCTGCAAGGCTCAAAGTCGATCAAGAAGTTTCAGCGACACACCGGGCCCATCTGCACAACCGGAGGATCGCTGAAGATTCGGGCCGACGTCGCCAATGCAAGCCGTACACCACCTGCGGCTTTACCATGGG # Right flank : CCTGGCTCACGACTCTCATGCTCGTGACAGGATCGCCCAGGTGCGACATCACCGTCCGCATCGGCATCGGCCAGGCACGCCTGACCGATGCCGATAGCTTCTGCGCGTTGTCGTCCGCTACGACGTGTTGCCTGACAATCGCATAACCGCCTGCTCCGCTGAGAGCAAGGGGATTGGCTGGCTGGGTAGTGGGCGTGGGCCGGCTTCTTCGATCACGTGCGTGGGGCCGTAGGGCCAGAGGCCGGACATGAGCGCGATGAGGCTGTTGGCTGGCCAGCGCTGGAGGGTCTCGTGGACGACGTCGGCGTCCGGCCCTGGGGTGGCGAACCAGACGACCGCCGGGCTACCGCTGGACGGATCGTTCGTTGCGCGGATCATCGTGGTCATATCGGCCTCATTTTCGAGGTGCTCGATGGCGTCCTCCAGGCTCTCCGTGACCTGCAGGCGTGGCCTGCTGCTCTCGATGACGGTCTCGGCCGAAAGGGGCGAGAGGAGACGGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //