Array 1 639-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXJ01000005.1 Nocardiopsis terrae strain KCTC 19431 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 638 29 100.0 32 ............................. CCGGTCATGGCGCGCGCCACCGCGGCCGTGTC 577 29 100.0 32 ............................. AGCTTGTACCGGCCGGAGGTGTACACGCTCCA 516 29 100.0 32 ............................. GAGACCGCGCCCCGCTCCCATCCCTTCTCCAC 455 29 100.0 32 ............................. GGCACGGGCCAGCTCCGGGACGGGGACATCCT 394 29 100.0 32 ............................. TCAACGCGGAGCCCAGATCGGGGAACCAGCCC 333 29 96.6 32 ............................T CCCCGAGGGCGGCCCCGAGTTCGAGGGCTTCG 272 29 100.0 32 ............................. TCCCGGTTGAGGAGTGGGACCCGTACCTCACC 211 29 100.0 32 ............................. CAGACGAAGAGCACCCCGCACCGACTGGTGTG 150 29 100.0 32 ............................. CTGTACCCGATGTCGTCCCAGCCGCGGCTGGG 89 29 100.0 32 ............................. CCGCCCAGGTCACGATCGAGACCGCCCCCGAC 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TGACGAGCGCGTGGCCCTTCTGCTCGCCGGGTTCGGTTGGGTAGGCGGCGAGGTCTGTGGGGACCTGCTCCTGGAAGTGCCGTACGAGTTTCCCGGTGTCGTGGCACCCGGCCCAGAAGGCGATCAACGAGCGAGCGTGCGGTTCTGCTACTCCCAGTCCGGTGCTGATGCGGTGTCTCAGACCTTGAGGGAGGCAGGCGTCCCAGATCTCCAGGGCAGCGGCGACGCTGTCGAGTGCGTGGCAGACGTAGGGGTATCGCTGGCCGTGAAGGCCGCGTTCTTTGGCCCAGAGCCTGAGATCGAAGTAGGAGGGGGTGTCGGGAGGAACCGCGGTCACGGGGGTGCGCTCCGTGGGTGTGTAGTGGAGTATGTGAGGCGACGCTAGTTCCCTGGCGGTTGGATGCGGGGCGTTTTGTGGTTTGTGGCCGAGTTCGGCCAAATTCCTACTCCTGGGTAGGTCTCGCGGAGATAACGCCCTGCGTTTTCGCAGGTCATTAACT # Right flank : C # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 1-272 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXJ01000003.1 Nocardiopsis terrae strain KCTC 19431 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 33 ............................ GCCGCCCAGGTCACGATCGAGACCGCCCCCGAC 62 28 100.0 33 ............................ CAGTCCGAGTTCGGGCTCGCGGTGCAGGGCCCG 123 28 100.0 33 ............................ GGTTCTGGAGGCCACCCCGGAGGAACTGGAGAC 184 28 100.0 33 ............................ GCACGGGTGCGGTCCGCCCTCCCGGCGCACCAC 245 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 33 GTGAGCCCCACGCACGTGGGGATGGACC # Left flank : | # Right flank : TGGTGGAACTCACCGCCCAGCGTGCTCAACGCTTACGCGCGAGCCCTCCGTACTGGTCGACCTTGCGGACGCGTCCCACTTCGGAGTCCTGCGGCCGCCACATCGTCGCGGACACCACGCCGGGTTCCAGCAGATCCAGCCCCTCGAAGAAGCGCGCGATCTCTTCGGGCGTGCGCAGGTTGTAGGGCAACGGCGCCGTGTCGTTCCACCGCCGTGCGGCCTCGATCATCGGTTCGCTCGTGCTGGTGCCGTCGCACAGGGCCAAGAAGCTGCCCGCAGGCAGAGCCCCGACATAGGCCCGCACGAGGTCGTAGGCCTGCTCGCCCGCGTAGTGACCCATCGTGCCCAGGATGGTCAATCCGATGGGTTCGGAGAAGTCCAGGTGTTTGCCGACCCGGGCCAGGAGGGTGGCCGGTTCGCACAGGTCCGCGTCGATGTAGTGAGTGGCGCCCTCGGGATTGCTGGTGAGCAGGGCACGGGCGTGGGCCAGGACCAGGGGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 138196-138834 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXJ01000003.1 Nocardiopsis terrae strain KCTC 19431 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138196 29 100.0 32 ............................. CAGATGTACTCCGGGTTCCTCGGAGGGCTGCT 138257 29 100.0 28 ............................. CACCCCGGAGCGGACTGGACATCCGGTA 138318 29 100.0 30 ............................. TCCAACACGGAGGTCAAGCTCTCGCCCACG 138379 29 100.0 32 ............................. GAGGACTCGAAGGAGGAGAAGCCCAAGGAGGA 138440 29 100.0 32 ............................. AGAAACCCCTGTGATCACCTTCGGAACCTACT 138501 29 100.0 32 ............................. AGAAACCCCTGTGATCACCTTCGGAACCTACT 138562 29 100.0 32 ............................. ATGTGGTCCTTCGTGGCGGGGTTGGTCACCAC 138623 29 100.0 32 ............................. GTCGTGGCCCGGATCCCGTTCTTGTAGGCACT 138684 29 100.0 32 ............................. GGCGTGTACCCCGAGGCGGGTGTGCAGATGTC 138745 29 100.0 32 ............................. CGTCTTTTACGGCAACGCGGCACCCGACTGCA 138806 29 93.1 0 .......................AA.... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : ATCACCATCCCCAGGGCCGCGGCCGAAAGCGTGAGGGAACGGAGCCGGCGGGACGGCGGGAGGGGGAGTCGTCGTGGTGGCGCATGTGTGTCCTCGTTCCGGTGGGTTCTCGGTCGCCCCCACCATGGATGACCAGGGTGAACCCCGGTTCGGTTGCGGGTGAGGGCAGCGTGAGAACCCGGTTTGTGTACCGGTGTCTTCGGCGCGGGTACGGGCGGAACGGCTCTGTCAGCTTTTCTCTCCTCGTACCTGGCCAGCTTCTTCGTCTTGCTGTGGCCCCAGAGCTGATAGCTGCCGCTTTGGTTTCGTGGGGGAGATATTCCAGGCCACTGCCCTGTACACCTCTGTTGCCTCCCGGGCAGGGCGGAGGTCAGGGCAGGGTGACAAGCTGTCCTGGCAGGCCCCGGGGGATGTGGGAGCATGGGTGGCCCAGGTTCTGGTGTGAGCCATTCGGAAGGTTAAGCGGAGATAACGGCTCGCGTCTTCGCAGGTCATTAACT # Right flank : GCCAACGCCATCCGCTAGGACCTCTACCCGAAACACGCGCACATACAGCGCTGCCCCACGATCACCGTGCGCATGTCCAGTGCTGATTGGGACTGCGGCTGCTCATCGGAGTGCACGCACGGCGACCAGTTCGAGATCCACGCTCTCACCGAGTGCGGATACAGGACCGCGTTCTCCTGGCGGGCCATGTAGCTGTGGTGACCTGCCCGCCGTGATCGACGTCCTGGACTCCTATCGTGAAGGGCCCGACTGCGCGTACTGGCGGGGCGGCGACGAGTTGACCTGACCCCGCACAAGACGACGCCCGCGGCCAGCAGTGCCGCCATGCACGAGCTAGGGGATCTCCACCACAGCCATTTCCGGAGCCTCCTCGGCGGTCAGGCTGAGCACGGCCAGCTCGGTGCCCTCGGGTACGTCGAACACCACCTCGTACTCCGAGGTGTTGCCCGGGTTGGTCTCGTCCGAGAACGAGCAGATGTCCCCCTCCAGGGAGTACTCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 311260-311959 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXJ01000003.1 Nocardiopsis terrae strain KCTC 19431 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 311260 29 100.0 32 ............................. ACCAGCGCCATGACGGCCGCAGCTTCGCTGTG 311321 29 100.0 32 ............................. CTGGAGGACTCCGACGGCGACCGCACCACCGC 311382 29 96.6 32 ............................T CCACTCCTCCCTCTTGATTTGGTGGGTGTAAC 311443 29 100.0 32 ............................. GTGTCGCGCGCCCCGAGTTCGAGGTCGGTGAT 311504 29 100.0 32 ............................. ACGCCGTCGTCGGTGGCGTGCTCGACCTGCTG 311565 29 100.0 32 ............................. CTTCTCCCACATCACGGCCTGTGGTCGCGTCC 311626 29 100.0 32 ............................. TAGATCGTGTCCTTCATGACGCCCAGGGGAGC 311687 29 100.0 32 ............................. CCTTCCGGCCCCCCGAAGAAACCGCAGGCTCC 311748 29 96.6 32 ............................T GGGATTCGGCCAGGGCGGCCCTGGCCAGGTCA 311809 29 100.0 32 ............................. GAACTGGCCAGGATCACCCGCGAGGACCAGGC 311870 29 100.0 32 ............................. ACGAAGCGGTCGCATCGGGCGGTGCCGATTCC 311931 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTAAGCCCCGCGCACGCGGGGATGGACCG # Left flank : GGGTTCTCACCACCGCCACCCTGATGCTGTTTCTCGGGCTGGGCGGCCTGTTCACCACCTCGGTGGTCTTCCTGCTGGCCACCCTGCTCGTGCTGACCTTCGCGTTCTTCTGTGCCCACGCCACCGCTTCCGCGTGGGTGGGTTCCCAGGCAGTGACCGGCCGCGCCCAGGCCACGGCCCTCTACACGCTCGCCTACTACCTGGGTGCCAGCCTGTTCGGGTGGCTCGGCGGGGTGGTCTACGACGCGGTGGGCTGGAACGGCACCGTGGCCCTGGCTCTGACGCTGACCGCCCTGGCCGGACTCATCGCGCTGCGTCTGCGCCGCCTGCCCGCCCCGGACCGTGCCTGAGTGCTTCGGGGGAGGTCCCGGTGGGTCGGCTCGTACCGAGGAAGGAGTTGTAGCCTTCCGGGCCTTCGGATGTTCGTATGCTTGGGAGTACGGGCTGCCCGAGTGAGATCACGCGAAGATAACACTCTGCGTCGTCGCAGGTCATTAACT # Right flank : GGTCAACCCCCTGAAAATCTGACCTGCTTCTTCACCTCCACCACCTTCCCCGCTCTGCTCGTTACCGTGGTCGTATGCCTACCGAGCTGCGCAACGCCCCCACCCCCACCGAGGTCATCGCCGCGTGGATCCCACATGACGCCCGCTGGAACGCACAGGCCCGTCAGGCAGCTCGGGCCGGGGTCGAAGCGCTGCGCCGGTACGTGACCGGGCTGATCACCCACCACCGCGACGGCGGTCTTCTGGTGGACGACGACTTCGACCTGCGCAGCATCGCTGCCGTCGTCGAGGACCTGGAGGAAGGCGGGCTCTTCCGGGTGAGGTGGGACCAGGCGCAGGACGCCCTGCTCGTTCCGGACAGGGCCGGGGTCCGGTAACTGGAAGCGACCACCCCGGAGACGACCCCGCAGACGTTCTCGGTTCCGGCTGAGGCCGTCGCGTGTGAGTGAGCCCCGGACGCGCTTGCTTCTGCCGAACCGGACAGGGCAGCGGCGGCTGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 4 669711-669195 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMXJ01000003.1 Nocardiopsis terrae strain KCTC 19431 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 669710 29 96.6 32 ............................T GGAGCTTTCCGAGAGCGGAGTGATGACACTCC 669649 29 100.0 32 ............................. TACGGCGGGTACACCTTCTCCGCGGACCCGCG 669588 29 100.0 32 ............................. ACCTATGTCTACATCGGTGCGGCCGTGGTGGT 669527 29 100.0 32 ............................. CCCTTCACGCAGGGGCTGGCGGCTGCTCGTCG 669466 29 100.0 32 ............................. TCGTTGCGGGTGAAGGCGTCCTCAGTGCGGAA 669405 29 100.0 32 ............................. CCACCTCCAGGCGGCGGAGCCCGGCCAGGGCC 669344 29 100.0 32 ............................. TCGCCCTGGAACTGGCCGAGGCCAGGCTGGAC 669283 29 93.1 32 ..............T..........G... GGGCAGACGGTCACCACGATCCGCGCCCAGGC 669222 28 82.8 0 ..........T...T.....A.-.A.... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.9 32 GTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : TCCCCGGTGAACTCCCGCAGTGACTCCACGGGGGCATCCGAGTCACGGAACCGTTCGGCTGTCGCCCGCAGACCGGCAGCTGCCGCCGTGACCAGGTCGCCGAAGAGTTCCTCCTTGGTGGCGAAGTGGCGGTAGATCGATCCGGTGCTGATACCGGCCTCCGCTGCGATCCGGCGCATGTTCACCGCCGCGTACCCGTGGCGTGCGAACAGCCGCACCGCCGCCGAGCGCACCCGCTCCCGGGTGGCGGCACGCATCGCCTCGTGCTGTTCCGGAGTCCGTGGCATCGATCGTCAGCCTCCCGTTTTTTGAATGAACATGTGTTCATTCTATCTAGGGCTGCGTGGATGGCAAGCGAGTTGAGTTCGTCCCAGGTTGCGGATGCGGTGGTTCTGGGCTTCTCGGAACTCGTCCGGGTCGTGTCATGATGGCTGGGCGCGAGCCAGCTCGTACCTTTGTTGCGGGGAGATAACGGCTTGTGTTGTCGCAGGTCATTAACT # Right flank : GGGCCTATGAGTGCACTCGGGGCCGAACAGACAAGGTGTCGCCCAGCAACCTGAAACGCCACCGGTCCCTCGCCGACAGTTCTGGCAAGGGACCGGTTCGTGCTGTGGCTACTCGGTGGAAGCCACCGTGCTCAGGAGAGCAGTCCATTCGGCACTCGCGAAGGTGAGGTGCCCGGATTCGCGGTTCTGGGTGTCCCTGACCCGGGTATCCGATCCTTCCGCCACCTCCACGCAGCTGCCGCTACCACCGCTGTAGGAGGACTTGTGCCAGAGGTGTTCAGTTGCCATTGTCGTTCACCATTTCCTGCAACATCTTGAGGGTGGCTGCCTCGGGCAGAGCTTCGCCCTGGAGGAGCCCGAAGCTGGTCAGACATTCCTGATGGCGTTCAGGGTCGCTGATGACGATCTCCCCGGTCATGTACTCCGCCGAGGCCACAGGGGGTTCTCCGGCGAAGGTGTACAGCCGGAACGCGCCACCGTTGCCGTAGTGGCGGCCGGTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //