Array 1 61873-60165 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSIT01000016.1 Vibrio cholerae strain N2829 NODE_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61872 28 100.0 32 ............................ TGAAAGGAGTGTTGTGATGGGCATCAGCGTTC 61812 28 100.0 32 ............................ TATTGTTTCTGGGCTGCATAGAGATTCGACTG 61752 28 100.0 32 ............................ GTTTTCACCTTCACAGTTAAAGGGGTCAGTAT 61692 28 100.0 32 ............................ ATTCCGGCGTATTGACCGCATTGCTTGACCTT 61632 28 100.0 32 ............................ ACATGGAAGCCACATACAACACCGACCCGATG 61572 28 100.0 32 ............................ GATCGAATCGAAGCGGGAAAACCTAGCGAGAA 61512 28 100.0 32 ............................ ATTGAGCGCCACATTGGCCGCTTCAATACACC 61452 28 100.0 32 ............................ ATTGATGCAGGCGTGGCTGCGTTGTACGCAAA 61392 28 100.0 32 ............................ CGCACCCTCTCGCAGCTCGTCAAGCGTCCCGA 61332 28 100.0 32 ............................ CATTCGCCAATCTTCTTTTTATCTTCGCATTC 61272 28 100.0 32 ............................ AATACTAAAATCACCGTAAGGGGTTTTTAAAA 61212 28 100.0 32 ............................ ACAAACAGTGAAAGATGCACTTACCCATTACA 61152 28 100.0 32 ............................ AACGACTTCACTGGCAAGGCTGGCAACGGTTC 61092 28 100.0 32 ............................ AAGCCGAATCATATTTTGATGATCGCCTAACC 61032 28 100.0 32 ............................ TGGCTAATAGAAGAGTCATTTAACCCAGAATA 60972 28 100.0 32 ............................ TCTAGTTCTTCTTCTGATAGCTCTGCTAGCTC 60912 28 100.0 32 ............................ ACCTAGCGATAATTTTAAGCTGACTTTGTTAT 60852 28 100.0 32 ............................ TCTGCGAACCTTTTGGCGCTCGATGTCGTTGA 60792 28 100.0 32 ............................ TTCAATCAGCATGCGGTCAATGAGCTTCTTCG 60732 28 100.0 32 ............................ AGCAGGTGCCGCCATTCTCTTTTCTTATCCAG 60672 28 100.0 32 ............................ GCTTCATAGTTCGCTTCGGTCAGTGCCGCTTT 60612 28 100.0 32 ............................ ATACAAATTCGCGCCAATGGCCGCGACTTTAC 60552 28 100.0 32 ............................ TTTTGCTCAATAAATGCGGCTCCCATGTAAAT 60492 28 100.0 32 ............................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 60432 28 100.0 32 ............................ CGCTGGGCCAAAAAAGACCAGGATATCTTTTT 60372 28 100.0 32 ............................ GCTCTCGATATCGGGCACACCCTACACGCGCA 60312 28 100.0 32 ............................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 60252 28 100.0 32 ............................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 60192 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //