Array 1 1173150-1171550 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040464.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1173149 30 100.0 36 .............................. GAAATTAAAAATAGTAGTATTAAACTTGAAACTCTA 1173083 30 100.0 36 .............................. ATAATACAATTAATAATCTTGAAAAAGATAATGAGA 1173017 30 100.0 34 .............................. TAAAAGACATTATCAATCTGATTTAAAAGCGGCG 1172953 30 100.0 34 .............................. AATAAGAACTAATTGCAACTAAGTTTATAATCAA 1172889 30 100.0 35 .............................. GCAAATGAGAAAGGCATAGGTAAAAATCTTGCAAT 1172824 30 100.0 35 .............................. TGATGATAATAAAGCAAAAGGGCTAAAAATAATAG 1172759 30 100.0 36 .............................. TTTTAAGCCTTTTCATCGACAAAGCAGACTACTACG 1172693 30 100.0 35 .............................. TATATTACCTTTGCAAATTCATTCTCTCCGATAAC 1172628 30 100.0 34 .............................. TAGCTATAATTGCTTTGTTGCTGAGTTTGAGCAT 1172564 30 100.0 36 .............................. TTATAGATACTCTCCTCTGTTTGAGGGGTGCCTAGG 1172498 30 100.0 38 .............................. TTTCATCGCCAAATTCTCTACGAATTTTTGTGATTATG 1172430 30 100.0 35 .............................. GATAATCAAAAAACCATTTTACCTTCCCCTTTGAA 1172365 30 100.0 34 .............................. TGTTTAAATAGCCTTAAAAACGTGGTTTGGTTTT 1172301 30 100.0 36 .............................. GAATAAATAATAATCTAGTCGAACTTAGCTATTTCA 1172235 30 100.0 37 .............................. TACCTGAATTTAGCGCAGATATCGCAAACAGAAAGGG 1172168 30 100.0 35 .............................. TTTTATCTATCAGCATCAGACGATAAATAAACAGA 1172103 30 100.0 34 .............................. GTCTTGCTGCTCTATTGTTCATTTGATGCCTTGA 1172039 30 100.0 39 .............................. AAAAATCACGTCGAGCCTGTAGTGTTTTCCAAGGCTTTT 1171970 30 100.0 35 .............................. GTATAGGTGTATTTGAAATGGTCACTGGGTTTGGG 1171905 30 100.0 35 .............................. TGCAGAGGTTCGCCCTTGATATACTTTGGCTTGAA 1171840 30 100.0 33 .............................. AATTTCACTATGGTATTAATCTGAAAAGTTGCT 1171777 30 100.0 35 .............................. TTTTTTGCTTTTTGCTCTTGAGCGTCAAGCCAAGC 1171712 30 100.0 35 .............................. TCCGTGATGAGAACGATACGATAGAGATCATAAAC 1171647 30 100.0 38 .............................. AGATTTGATCTTGCAACTGATGTCGCTGGTGTAATGTT 1171579 30 96.7 0 .........................T.... | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 99.9 35 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TCTGCTCAGACAAGGGGTGATAAAACTGCATTTAACATACTTAAATATGCAAAAAACGACCAAAATATAGCCATAACTCAAAATGAATACTGGATAAAAAAGCATAGAAAGATAGATGAAAAAGTATTTTTAAGAAAAGATGTAAAATCCAAAGCAAACTGCGTGGCTTGCCACAAAGAAATAGAAAACGGTATAATCGGCTTGATAGACTATGAAAAAATAAAATAATTTACAAGTGTTTAGCGAGTTTAAAATTTGCCTTATAGCTATTTTTATTTTGATTTAATATGGTTAAGTTAGATTTATTTATGGATCAACTTTTGCCTAAATACTTAAGAAAAAATTGCTTTAAATAACTTGATAAAGCTATATTTAAGATTTATAAAATAGCTTAAATGCTTTATTTGATGATTTTATAAATACTATATTAAGCCATTTTTTAGTAAAATAAATATAGTAAAACTTGGTACAAAGTACTAAATTTAGCTGTTTTTGTTGCT # Right flank : TTTTTGTGATTTGCATTTTTTATCGCAGTTGTAGCTGTTTTGATATTTTTGTCTAAGGCATCACTTAGAGTAGTGGCTGTTTTGTTGATTTTATTAAAAGCACTATTAAACTCACTTAAATCAACTCCAAAGGTTAGAGTAGGATTTGCCATATTTAATCCTTTATGTTATACTTTTTAGAAAAAGGCTTGTAGATGTTTAGTTTTATTCTTTTTATTTTGGTTATTATTTTAATGAGACTTAACTGCCATTTTGATTTTAGCTGCTCAAAGCCTTACACTGGCAAAACTGATACAAGATATAAAGATATCAAGCTTTAAGCCTCATTTATCCTTTTTGCTATCTCAAAATAATCTATAAAATCATTTAAATCCATAGATAAAATCTCATTAAACCCAAAATGGTATAAAATTCACCTTTTTAGGATTTGGAGCTTACCTTTTTTATATTATAATAACCATATGGAAAGCATTTATAAAACTATACTTGAGCTAATAGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1190837-1193694 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040464.1 Campylobacter hyointestinalis subsp. hyointestinalis strain S12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1190837 30 100.0 34 .............................. GTTTATGAAAATAAAATGTAAAGAAGTGTAAAGT 1190901 30 100.0 37 .............................. CTGAAATTGCCCCTACTAAGAGTTGCTATAAGACTAA 1190968 30 100.0 37 .............................. TACGGCGAGTTTGTAGATGGCTCGTCAAACCTACTGC 1191035 30 100.0 36 .............................. CATATACAAATTTACCAAACAATGAAAAACATAAAA 1191101 30 100.0 36 .............................. TGGAAACGCAATAGCAAGTAATTCACTAGCAATCAC 1191167 30 100.0 34 .............................. AAAATGATAGAGATAATAGATGAATATAACCTAT 1191231 30 100.0 37 .............................. TTAAATTTAATGATAAAGGAAATACCGATGAAAAAGA 1191298 30 100.0 36 .............................. CGAAGTTTTTAAAAATCTCAACCTAGAAGCTTTCAG 1191364 30 100.0 37 .............................. TTATTCTTTCAATCTCCGGCTTATTTTTTTTCATTTC 1191431 30 100.0 38 .............................. CCGTTGCCCCAAAACTAAAAGACAGTTTTTAAAAAAAC 1191499 30 100.0 35 .............................. CATATTACCACTATTATCTACTATGTACCACATAT 1191564 30 100.0 38 .............................. CCAACAGTACCAAGTGATTTAGACATAGCGGTATTGAA 1191632 30 100.0 34 .............................. ATACTAGTCATGATAAGAACTCCGAAGAAGAGTT 1191696 30 100.0 35 .............................. TTATGTCAGCAGTGCCGACGCTCTCATTGGCGCTG 1191761 30 100.0 36 .............................. TTTGGCAAATAGTTAAGTAAATAAAACCAAATCAAA 1191827 30 100.0 35 .............................. GACAACTTGGAGCTTAGAAAACTTCATAAAAACCA 1191892 30 100.0 37 .............................. ATCACGCTTGGGCTAGTTATCGTAGTAGCCTCAGCTA 1191959 30 100.0 36 .............................. AGAGTTCATAGATATGACTTTTCGAGAGTATGATAA 1192025 30 100.0 34 .............................. AATGGCAAAGGCTATCTTGGAGTTACAAAAAAAC 1192089 30 100.0 38 .............................. CAAGCTGGAAATTCGCCCTAATTTGTTTCTCCCTGAAA 1192157 30 100.0 36 .............................. ATATATAGTTTGGGATAAAAAAGAAGATGGCAAACC 1192223 30 100.0 38 .............................. TCGTTGGCTTTCTGTTCATCTGATAAATCGTAAGTCCG 1192291 30 100.0 34 .............................. TCAATATCTTTTATCTTGATTTCAAGTGGTTTTA 1192355 30 100.0 34 .............................. ACTATAGTTTTGCTCTGCAACACCTTTGGATACA 1192419 30 100.0 35 .............................. CATTACAAAACTTACTCTAAAAGCAAAATATATGC 1192484 30 100.0 34 .............................. AAAACCAAACCACGTTTTTAAGGCTATTTAAACA 1192548 30 100.0 37 .............................. TGGTCAGATATCGACTTTGCAAGGAACTTGATAAATA 1192615 30 100.0 36 .............................. CCTTTCTGTTTGCGATATCTGCGCTAAATTCAGGTA 1192681 30 100.0 36 .............................. CCCTGAGTATTGGCTAGTTTCAGGGAGAAAAATTCA 1192747 30 100.0 36 .............................. CGAGCGAAAAAGGGCGTATGTTATTGCCTACACCGA 1192813 30 100.0 34 .............................. CTTTAAAGCCTTCATTTTCTTTTATGCTATCTAT 1192877 30 100.0 35 .............................. CGCTTCCTTATACGCAAGTTCAAACTCAAAACTTA 1192942 30 100.0 35 .............................. CTACTCATCTCAAATGCAGTAGCACCAGTAGCAAG 1193007 30 100.0 34 .............................. TTAAAAAACAAGCTCCACAGCACTACAAAGAGAG 1193071 30 100.0 37 .............................. AAGGAGATGGAAAATGAACACGCAAACTATGCAAAGT 1193138 30 100.0 36 .............................. GCGAACAGAGCGAAGAAAGTAGTGAAAGTGCAAATA 1193204 30 100.0 36 .............................. AGCCTTGGAAAACACTACAGGCTAGACGTGACTTTC 1193270 30 100.0 34 .............................. AAATCTTCAGTCGGAAAAGCTTCTTTAAGCAACA 1193334 30 100.0 37 .............................. AGTTTGGCAATGCAGGTAGAGTTTTAGCTATCTCTGA 1193401 30 100.0 37 .............................. AATTTGATCCGTTGATTGTTGAAACTAAAATCGTAAC 1193468 30 100.0 36 .............................. TTCTGCTTGAAAGTCAATTGTGGCAACATTTTGGCT 1193534 30 100.0 35 .............................. CCGACTTATAGCTATGGAATCCTTAGAAAGTCTTG 1193599 30 100.0 36 .............................. TAGAGTTTCAAGTTTAATACTACTATTTTTAATTTC 1193665 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 44 30 100.0 36 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : CTATCTCTCTTCTTCTCATCTCTCCATCATCATTCTCGTGATCAAATCCTAATACGTGAAGCAGTCCGTGAGTAAATAATAAAGCTATCTCATCTTCTACTTTATGCCCTAGCTCTTTTGATTTTGAACTAGCTAAATCACTGTTTATAACAATAGATCCAATAGGGAAATGAGGTACATACTCAAGTGGAAAGCTAAGCACATCTGTAGTTTTATCTATATTTCTCTCTTTTTTATTTATCTCTTGCATTTCATCACTACTAACAAATACAAGCTCAATCTCTGCTTTAGTAAGCTCATCACATATATCATCTAAAATACTAGGGTAATTTGTATCACAAAGTATCAAATTTAGTCCTTGGTGTGAATTAAATCAATCGGCTTTTTTGCAATTATTATTTGCTTATTTTATATAAAATCAAAGATTTTAAAGCACTATGAAAACCGATTAAATTTAGCTATAAAAATTATGGTAAAACTATACGCAAAATATAGCCCTA # Right flank : CAGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTCTTAAGTATTTAGGCAAAAGTTGATCCATAAATAAATCTAACTTAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGCTAAACACTTGTAAATTATTTTATTTTTTCATAGTCTATCAAGCCGATTATACCGTTTTCTATTTCTTTGTGGCAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTCATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATGTTAAATGCAGTTTTATCACCCCTTGTCTGAGCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //