Array 1 446639-445938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBF01000003.1 Streptomyces varsoviensis strain NRRL ISP-5346 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 446638 30 93.3 31 .............C...............C GCAGATAGCGCAGTGGGGGACAGCCAATCCC 446577 30 96.7 31 .............................A GGGCGTGGCGCGCGCTCACCTCCTCCGGCGT 446516 30 100.0 31 .............................. TGGGGTTCCCCCGCCCGTAGGTCGCGCTCCG 446455 30 100.0 31 .............................. GCTGTGGTGGAACGTACGAGCCTGCCAGCCG 446394 30 100.0 31 .............................. TGCCAACGTTGTATTTCAGCGCCGACAGCAC 446333 30 100.0 31 .............................. GAAGCTTCCGCGCGAACGCCATGCGCCACTG 446272 30 90.0 31 ..............A..........C...T ACGTCGCGGTCCGGGGAGCCTCGGCGTACGA 446211 30 93.3 31 ...................A.........A AACGGCCGAACCCGCAGATGAGCGCCCGCAC 446150 30 90.0 31 ..............A..........C...C GGAGCCAGTGATAGAAAGAGCCGAGCTCATT 446089 30 96.7 31 .............................C AGTCCAAGGCCGACCGCGACCCGGCCGAATG 446028 30 90.0 31 ........T...TG................ CGATGCACGGCAAGACCGTGACGGTCCGGGT 445967 30 80.0 0 .............C.......C.CCC...T | ========== ====== ====== ====== ============================== =============================== ================== 12 30 94.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCCGGTGGGGCTCAGGCCGCCGTTTCCGCCGCCGCGTGCATCGCACGGTCCACAGTTCCCCTGCGGGGTACGTGGCATCGCAACGACCCTGACCGGACGCGCACACGGCAACTGGTCGCACGGGCCTGCCATGTGGGCACGCGGGGCCGTGGGCCAGTAACGCCGGGGTGTGGCGTTGTTCGGCGTACGGTACCGAGCGGGCCGCGACGTACGAGGCGCCGCGGTTCCCGCTCGGCATACCGGCTGGCTTCGTGAGCGGTCTCCATGCCGCTCGCGAGACCGGCTGGCCTTCAACGGCGTCCGGGCTCGTGCCGGCTGGCCGGTGCTCATGATGCGCGCTGGCTCCGGGGCGGGGTGAGGTTGCGGGCACTTTTGGTCGGGCTTTCCGCGTTGTTCCAGTGGTGTGTCATCGGTCATGGGGAGTTTTGTGCAATATGCCGGAGTCTGCACAAGTGAGTAAAAACCCAGATCCACGAACCTGAAGCACCAGGTCACGCCCT # Right flank : CACCCCAACCGAAACCGCAACCGGCAAATCACGGCATCCGTGTCCCGCCGTACCGCATGTGCCATTACCGCGCCCCGCTGGTTCTGGAGCAGTCGCTGCCAGACGTGCGCGGGCTCGACCTCTGGGATGAGTACCGTGACGCGGTTGGAAGGATGGCGGTCGGTCATGGTTTGGACGTAGTCGACTATGGGGCGGCCCAGGGCCCGGGTAGGGGCCGGGAGTTCGATCAGATCCACCCCCGGTTGCCATAGTTCCCAGTCGCGGCGTAGGGACTCGGCTGCTCGGCGGCCGTCCGCGTCGGGTTGGGTGACCGTTACCGCGCGTACTTCGTCACCCAGCGACACAGCGGCCGTCAGGGCCTCGCTGGTGAGGCGGGAGAGGTGGGAGACCGGGACGATCACGACCGAGTGGCAGCGGTGCGGGGGCTCCGGGACCCGGCCGAGGCCGAGGCGTTCGCCGATGCGGGTGTATGCGCGGTGGACGGTTTCGAAGGCCAGGAC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450194-449520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBF01000003.1 Streptomyces varsoviensis strain NRRL ISP-5346 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 450193 29 96.6 32 ..........T.................. CTGGCGGCGAGCCCGGAGCAGATGGGCCGCTG 450132 29 100.0 32 ............................. TGAAGCCTCGCCGACAGAATGTCAGCGAGCGG 450071 29 100.0 32 ............................. TGGTCCATGATGTCGCCCTCGATCTTCGCGGC 450010 29 100.0 32 ............................. GGGTCCACCATCCGGTGGACCGTGGGGCCGGT 449949 29 100.0 32 ............................. ACCTCGTAGAAGTCCGGAAGACGCCGCACCCC 449888 29 96.6 32 .................A........... GTCGAAGGCCACAGGGGTCCTTCCGGCTCAGT 449827 29 100.0 32 ............................. CGCCTCAGCCGCCAGTGGAAGGTCCATATCCT 449766 29 82.8 32 ...G..T.......T...AA......... GCCAGCGCCGTGCCTTCGGGCGCCTGGCCGTG 449705 28 89.7 32 ...G......T..........-....... TCCATCAGCGTGGGGTGGCATATCGCCGGTGT 449645 29 96.6 67 ...G......................... GGCATCGTCGGAGACATCCGTTGGGCCCTCTTGTGGTCCCCGCACGCCGGGCGCCCGGATCGCCGAA 449549 29 75.9 0 .C.G....A....A.......A..C...G | A [449539] ========== ====== ====== ====== ============================= =================================================================== ================== 11 29 94.4 36 GTGCTCCCCGCGCCCGCGGGGGTGGTCCC # Left flank : GCGGGGCGCTGCTTGCAGCGGGCCTCAGGCCCGCCGGTCCGGCTGCCGCGGTCCGCAGTCTCCTGGCGGGGTGGGCGTCACCGCAAGGACCCTGACTGGCCGCACGTATGCGACAACTGCTCGCACCGTCCTGCGATGTAGGCACGCAGACCCGTGAACCAGCGACGCCGAGATGCGCTACCGCGCGGGCCGCGACGTACGAGGCGTTGCCGTTCCCACTCGGCACGCCGACTTCGTGCGCGGCCTCAATGCCGCATTAGAGACCAGCGCGCGATCCGCCGGCCGAGAACAGCACTTCCGCGACATCCGGGGCGGTGCCGACTGCCCGTTGCCCGTGAGCCCCGCTGGCTCCGCGACGAGGTCGCGGGCACTTTGGCCGGACTGCTCGCGTTGTCCCAGCGATACGTCATCGACCATGGAGAGTTTTGTGCCGTATGCCGGAGTCAGCACCAGTGAGTAAAAACCCAGACCGGCCGACCTGAAACAGCAGGTCCCGCCCT # Right flank : AACTGGGGCCCCGCGATGGAATCGCCGACCGGTGGTCAGTTCCCGCCCACGGCCGTCTGCGGGAGGCCGCATTCACGCCGAGGGTGGTTGGTGGCCCGGGCGCGGAGGGGGTCTCAGGTCGCTGCTTTCGAAGCCGCGCCCTGCGCACGTACCGGCGCGAGTCGGCATGCGGCGATGCTTCCGCCGCCCGGCGCCGGGTGCCGGGGAGCCGGTGACGGAGCACCAACCGCCGGAGGCCCCGGCGTAGCGTTCGTGGCATGGTGAGTGGACAGCACTTGGGCGCCAGGGTCCGGCGGTTGCGTCGGCTGGCGGGCCTCACGCAGGAAGGGCTGGCGGAAGCCTCAGACGTGTCGGTCGATGTGATCCGCAAGCTGGAGCAGCAGCGTCGAGGGTCCGTCTCCCTGCCAACCCTGCACGCGCTCGCGCACGGCTTGGGCGTGGAGTTGACCAGCCTTATCGGCGACCCGCCCGGCGCGCCGTCCACAGGGGAAGCGGACTCC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.20, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 453241-452783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBF01000003.1 Streptomyces varsoviensis strain NRRL ISP-5346 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 453240 29 100.0 32 ............................. TCGCGGCACAGGCGGTCGACTCCGGCGGCGAC 453179 29 100.0 32 ............................. CGAGAAGGGACCACGCGGCGGGGTGCGGGTCA 453118 29 100.0 32 ............................. CCCTACAGCGCGTACCTGAGCGGCGGTGAGCT 453057 29 96.6 32 ........T.................... AGCAACACCCCTGCCGCCTCGGCCACGGCTGC 452996 29 89.7 32 ............CGT.............. CGGCTGTACCGGGGGAGCACGATCCTGTGGCG 452935 29 89.7 32 ............CGT.............. CCGAACAACTGGCTGAGGGTGTTGGAGGTGAT 452874 29 96.6 32 .........................C... TCTGCGACCGCTGTACGCCCGGCATGCGAGGA 452813 29 89.7 0 ....C.........C............T. | T,G [452788,452791] ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.3 32 GTGGTCCCCGCGTAGGCGGGGGTGGTCCC # Left flank : GCTCGGCCCCGGGCTCGCCGTACTGGTGATACCACTGAGAGATGACGGGCGCACCGCTCGCCCCTCCGCCCTCCCGCCCGGTATTGGACCCACACGCGGTGGCGAGCCCCCCGGTCAGGACAAGCCCGGCCAGACTCCCACCACTTGCCATGAGCCGCCTGCGACTGATCGGCATAGCACGTACCCCCTCGTTTCAGCACGCTTCCGCTCACTCCGTCGACCGCCTGCGATCGTATGGCCCAACGATCAACGATGGAGGGACTTTGTGATAGGGGGATTGCGGGAGTGTGGCGGGCGGTCGGGGTGGGGCGGGGGCTTGGTGCCTGGTGCCTGGTGCCCGGGCGCTTCGGCCCGTGGCCGGCTTGGGCGGCGGGGGGTGGTGAACGCGGTGGGGGATTCCGGCTGGTGAGGGGGGAGAGGGGTGTTTGCGGCGTATGTCGGACTCTGCGGAAGTGAGTAAAAACCTGGGTATGCCGTCATGAAGCAGCAGGTCGCGGTCT # Right flank : GTTGGAGGCCCGTCTGCACCACACCTGGGCGAGGGAGACTCCGGCCTACAGTTCTGGGGTGAGGCCGGAGCGGCGGGCGAGGTTGACGAGGTCGGGGCGGCTTCGTTGGTGGAGGATGAAGAGGACGCGGAGGACTTCGCGGGCCATGGGGTGGATCTCTGCCATTTGCGGTGCGACCTCGTGGGCGCGTTTGAGGGCCTCTTCCGCGCCTCGGATGTCGTTGAGGTCGAGACGGGCCCGAGCCGTGTCGATGCAGAGTCGTCCGATGCGGTTCGCGCCGAGCCCGGGGACGGGTTGTCCATGAGGGGCTGCGCCATTTCAGAAGCCCCGGTCGGGGCGGGCCAGTTCGACGTGGGCGGCCAGCTCGTACAGCGCTTGATTGCCCGGCCCAAACGTGAGGTTGTGTCGCAGTACGTCGCGCGGGAACCGCGCCGCAAGGGCCAGAGCCCGCTCGTTGTGGGCCGCCCACGCGTTCTGGTCCTTCGCCCTGCTGGCCAGCA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTAGGCGGGGGTGGTCCC # Alternate repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 158922-159682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBF01000004.1 Streptomyces varsoviensis strain NRRL ISP-5346 contig4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158922 29 96.6 32 ........................A.... CGCCCGCAAGAGCCGCAGCGACCGACAGAACC 158983 29 93.1 32 ....C...................A.... TCATCCGCGCCGAAGTCGCCATCGCGTACGCC 159044 29 100.0 32 ............................. CTGCACCAGCACATCGACGCCGCCCGTGGCCT 159105 29 100.0 32 ............................. CACCCGAGATGGAGAACGTTGCTCGTGACGAG 159166 29 100.0 32 ............................. CTGGGCAGTGCCGATGAGGCCATCCAGAGCGT 159227 29 100.0 32 ............................. CATGATGGCAACGGGCAGGTTGGTGCCGGCCA 159288 29 100.0 32 ............................. CACCGACCACCGTAAGGATTTTGTGATGGGTA 159349 29 100.0 32 ............................. GCCCGGGCCCTGGAACTGGCCACCCAGGTTGC 159410 29 100.0 32 ............................. CGGGTCTGGCCGACCTCCTACCGCGGCCCCGT 159471 29 100.0 32 ............................. AGCACGGGCGCGACCAGGCGCCGCATCAGCGC 159532 29 100.0 32 ............................. GTGGCGCGCGTGTGAGCCAGGGAGGTCTGCAC 159593 29 96.6 32 ............T................ GAGGAAGCGACGCTGCCGTGCGTGGCTTTCTG 159654 29 86.2 0 ...A.........C...........G.A. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.9 32 GTGGTCCCCGCGCACGCGGGGGTGGACCC # Left flank : TCCGGCACGCCGGCTACTCCTTGGGCCCGAAGCGTACGAGCAGCTCCCGCGGCACGACGACGAACCCCTCATGGGGAGCGACGTCCTTGAGCTGCTTGACGTCCTCGGGGTCGGTCACCGCCACCCCCTGTACGAGGATCTCGCCGCTGTCGAGGTCCTCGTACAGCGTCGGGCACTTCCCCTCTTCCGAAGTGGTACCGATCATCTCCAGCCTCCGGGCCATGATGTCCTCCACGTCCTGGCCGGCCTCCTGACCGACGTGGAGCGCACCGTAGACCCACGAGCGAGAAACGCACCAGCGCGGCAGTGATGCACAACCTTGGTGCTGGCCGCACGTGCACCCACGCCACATAGGGCGCATCACTTGGGCTGGTCGGTACCCTGCCTATGCGCTGCTCTGGGAAGGGCGGAGATTACCTGTGTATTTACCCCGAATGCCGGACTCTGTAGAAGTGAGTAAAAACGGCCACCATCCCGCATAGCACTGCAGGTCACGGCCT # Right flank : CTCACCCCGAGGACAGCGATGGGCCGAGCTGATCTCGTTATGCGTCCCGTCCTTGTCCATGGCCTGCTCCTGCCGGGCCGGAGTCTTCGGCCCCCCGCCGCGCCCGCACGGCACGATCGAGGGCGGCCGGACGGGCGGGACGGGCGCCCGCATGGTCGACGGCGGGCGCAGTCCCTGCAGGTGCAGTCTTCGCGGCACAGGTCACGGAGGGGCCGAGGACGGCGGTGGCCAGCGCATCACCGGAACGCCCGCCCTTCTGCCCGCCAACCTTCCTGCCGGCGCGGTGGAGGGCTCCGGCCGTCGCGTTGAGGGCTGCGGCGTTACGGCTGAACAGGCCCATGACGGCCCGCTTTCGTACGGTGGTTGTCGAAAGCAGGGCGTGCCCCGGGCCGGATTCGATCCGGGCTGTGGCTCAGCGGCGCGGGGCGGCGGCTGCGGCCGGAATGAATTCGGTGTGCGCCTTGCGGGCCCGGCCTCCCGCCGTATCCACGGCCGCGTAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 99713-98708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBF01000009.1 Streptomyces varsoviensis strain NRRL ISP-5346 contig9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99712 29 100.0 32 ............................. GGGACGCTGCACCTGCCGAACCGCGAGCCGGT 99651 29 100.0 32 ............................. AGGTGCGTCGCCTGGTCGTACGCCATCAGCGG 99590 29 100.0 32 ............................. GCGGCCCCGATGGTGTGTCAGATGGAGGCGGA 99529 29 100.0 32 ............................. GACCCGTGGTCGTGGACACCCATCCCGGTGGT 99468 29 100.0 32 ............................. CGCTGCTCTGGTCCCCGGTCCACGGGGCACAG 99407 29 100.0 32 ............................. TCCGGCAGTGGAATTACCGGTCTGCCCAGGGC 99346 29 100.0 32 ............................. AGGTTCCAGGTGTGGCGGATGCTGGCGGCGTC 99285 29 100.0 32 ............................. AACGGCGGTGAGTGGATCGGCGCCGTCGTACG 99224 29 100.0 32 ............................. TTGAGGCCGTGGTGGAAGGGAGGCCGCAATCC 99163 29 100.0 32 ............................. CGCGACGCGATGGCGGGCGTGGCCTCTATGGG 99102 29 100.0 32 ............................. TGACCGGCCATATACGACCGTCTTCGACCGAG 99041 29 100.0 32 ............................. ACACCGACACCGGCTACGGGCTTGCGCTCGCC 98980 29 96.6 32 ............................G TCTGATGCCCGTGTGACCGATGAGCTGATCGT 98919 29 100.0 32 ............................. ACCGAAGAAATCAAAACGTTGGAGCTGGATTC 98858 29 100.0 32 ............................. GGTCGGCTGGTCCACGGTGCTATTCCGTCTCG 98797 29 96.6 32 ..............T.............. TTTTTGCTGGGTGGCCTACTCGTCGCGCATGG 98736 29 86.2 0 ..A..................T....T.G | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GTGGTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CGAAGGCGGCCGCAACTACGGGGAAGAGCCCATCTGGTGACCGTCATCATCCTCGCCAACTGCCCCGCAGGACTCCGAGGCTTCCTCACCCGCTGGCTCCTCGAACTCTCCCCCGGCGTCTTCCTCGGCTCCCCCTCCGCTCGCGTACGGGACGTCCTGTGGGCCGAGGTACGCCAATACTCCGGCAAGGGCCGCGCCCTGCTCGCCTACCAGACCAACAACGAACAAGGCTTCACCTTCGAAACCCACGACCACGCCTGGCACCCCACCGACCACGAAGGACTCACCCTCCTCCGCCGCCCCAACCCCACCCAACCGCACAAGACCACCAGCCCGACCGACCCCCCGAAACAGGGCTGGAGCAAGGCGGCCAAGCGCCGCCGATTCGGACGAGGTTGAAATCAATTGGGCTATTTAATACCTGCATTGAAGCTATGCCGGAATCTGCGATAGTGGGTAAAATCCGCTGTCCAGCGCCATAAAACCCCAGGTCGCGCCCT # Right flank : CCGCCCGGGTGGAACTTCTTGACCGACTTGGTGTTCTCCTCGCCAACATGTTTTCCCCGCGGGAACGCAATCGGGAGCCGACGTCCTCACGATGCCCCCATCACCGACTTCTCTTCGCTCGACGGTCATCCCCGATCAATGCACCCAAGGCCCACGCCCGTTACCGAAAGTCATCACCGTCGAGGCAGGGCAAAGCCCTGGAAGCCCCCTGCACACGCCCTCCCGTCAGGGGGTTTCCAGGGAGTTTGAGCGCGGCGCAGGGGGTTTTGAGGGGGCGTCAGCGCGGGACGGGCCGGGGCGCTGTGGGTGCGGCGTTCTCGGTGTTTCCCAGGTCGGCTGACCACTGGGTCTACCGTCTGCCGCATCCATGAAGGTGAAGTTCCAGGAGACTGCGCGGGGCGGGCTGGCGGGCCACGCTATTGAGCGCTGACGCCGGCCTGCGGGGGGCCGGCGGGGTCAGCAGTAGATTTCTACGTGGTTGGCTACGTTGATGCCGTCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 110914-111553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBF01000009.1 Streptomyces varsoviensis strain NRRL ISP-5346 contig9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110914 29 100.0 32 ............................. CGCCGGTACACGGCCGGTCCGACGACCCTGTC 110975 29 100.0 32 ............................. TGCTCCGGTCCAGGAAAATGGCGCAAACTGCA 111036 29 100.0 32 ............................. CGCATAACAATCGGCTTTTGTGATCATGGGTC 111097 29 100.0 32 ............................. GGCCTGGAAGACCTCGTCAGCCTGGGAGGCGT 111158 29 100.0 32 ............................. ACCGCTACGAAGATCCGCCGCCTCCACCGCAA 111219 29 100.0 32 ............................. CCGCCCGCAGATAACCCGCCTGTCGGCCCGGC 111280 29 100.0 32 ............................. AAGTGCGTTGCCTGGTTGAAGGCCATGAGCGG 111341 29 93.1 31 ........................T...A CGCCCCCGACCAAGGGCGACGATTGGTGACC T [111365] 111402 29 89.7 32 ...........A............TT... GCCATCAGGCCACCGCCTTGAGCGCCTTGCTC 111463 29 93.1 33 ........................TT... CCCGGAGGCTCGGAGTACGAAGAGCAGACGTGC 111525 29 86.2 0 ..........TA............TT... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.6 32 GTGGTCCCCGCGCACGCGGGGCTGGACCC # Left flank : GGTGTGGTGGAAGTTCAGCCGCACGAGGCGGAAGCCACCCTGCGCGGACGGGCAAGACGTAAGGTCTGCGCGCGTCGGCCGGGGTGAGCAGACGGCCCCGCATGCGCGGGGATCACTGTGAACGTCACCTGGGGCCGCTGCCTCCCCATGGGACAGCCCCGCGGGGGCGGGGGCAATCCATACTCTCCTGTTTGCGGCTGACTGCAGAAGATGACAGTAACCACTTCTGGCAAGCCGCTCACGAGGGGACTCGCTCGTTCGTGGGAATGGGAGCAGTTTGGGGCTTGCTTGAACCCCTCCAGGGTGTCGTGGAGGAGTCGGCACTGATTCCCCGGGTGGTGCATGGCACTACCCTTCCACTCGTCACCGCATCGGCCTGACCGCCAAGATCTGCGAACCGGCGCAAGGTGCAATCTAGGAGTGGAATGCGGCAAATGCCGGAGTCTGTCTTAGTGGGTAAAATCTGGTCTCTCATGGAATGAAACTGCAGGTCGGCGCCT # Right flank : CGCGACCTGGACGCACCGCGGCACCCGAACGGAGTGGTCCCCGCGCACGCGAAACCTTCGTCCTTCCGTGCCCGGAGCCCTGCGGGTTCGTGAAGGGAGTGCGCCCAGTGCGGACGACGGAATCCCGAACCTCGCCGACAGGCGAACAACGGCCTGCCGGAGGAGTTCTGGCCCTTCATCTTTTTTCCCTGGCCAGTTCTTCGAAGGCGGTGGCGTATTCCTCGGCAGTGGGCGTGGCGAAGGCCTTGCTCAGCGTCTCCCCGTATGCCTTGAAATCTTCTGCCGATGGGCACTGAGGATTTGCGGGTTCTACTCTCCCGCGGGCTGTGAGGCGGCCCGTGGCGGCCTCGCGGAGCTCCAGGAGGTACCTGCCGGTTCGGAGGGGGACGGTGCGATCGGCGTACGTGCACCGCTTTCCGCTGTCGCGGTGGTCGTCCTTGTCGATGCCCGTACAGCCGACCAACTGCACCCGGCGGACGTCGTGTTCCCGCCAGGTGAGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGCTGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGGACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //