Array 1 58138-59887 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABOO01000003.1 Clostridium perfringens D str. JGS1721 gcontig_1108490430993, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 58138 36 86.1 29 A...C.TA..A......................... TATACTGTAAATGGTGGTAAGTTTACATT A,A [58140,58150] 58205 36 100.0 31 .................................... GATGATATCCCATTCTAGGAAAAGTTTTAAA 58272 36 100.0 30 .................................... TATAGAAATCATGGAGTAAAGACATTAGCA 58338 36 100.0 30 .................................... ATGAATATTTCTCTTGATTTTACAGGGAAC 58404 36 100.0 30 .................................... GCAGAGGAGGCTCAAGCTCAAGAGCAGGAA 58470 36 100.0 30 .................................... ATATAAGAATTTAAATAAAGTTAAGAGTAA 58536 36 100.0 30 .................................... TTTAACTAATAATAAACAAAATGAAGAATT 58602 36 100.0 30 .................................... GGAGAGGCACTTGAGTGTTAATACAGAGGT 58668 36 100.0 30 .................................... TTAAACTGATACCCTTCAACTACAACACTA 58734 36 100.0 30 .................................... AGTACTGGTTGTCTTGATACTAAGTCATAA 58800 36 100.0 29 .................................... AGATTAGATAACTGTATTGATTATAGAAA 58865 36 100.0 29 .................................... TAAAAAGAATAGTTGTTTTTGTAGATGAA 58930 36 100.0 30 .................................... TTAATTAATACTGATGTTGATGATACTGTA 58996 36 100.0 30 .................................... CAAGGAGCTATTACAAAGCTTCAAGCTAAA 59062 36 100.0 30 .................................... CAAAAACCAGAAGAGAATAAACAAGAAAAA 59128 36 100.0 30 .................................... AATTCTAAAATTGAGGTAATAAGTAACTCT 59194 36 100.0 30 .................................... AAGAATAATCCTATCTATATGAATGTACCT 59260 36 100.0 30 .................................... GCTAACGTTGAATATTTAGTTGATAAGCTA 59326 36 100.0 30 .................................... TTAGTCTATTTTTTATTAAGTTTATCTTTT 59392 36 100.0 30 .................................... TAAATACAAAGTAACAAGTTATAAAGAGTA 59458 36 100.0 29 .................................... TATTTAACGGTCATTCAGTACTAGACATT 59523 36 100.0 30 .................................... TAAAATGAAAATAGGTATTAGAGACGGTCA 59589 36 100.0 29 .................................... TTCTAAAAGATGTATTTTATTAGAAGACT 59654 36 100.0 30 .................................... GGTCAAGAGTTAAGACTTTATAGATATGGA 59720 36 100.0 30 .................................... TTACTTTAAACCTAAGTGTAAAGATTATGA 59786 36 100.0 30 .................................... TGCAGGGACAAACTGGTTAATCCCAACAAC 59852 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.5 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGCCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //