Array 1 539485-540889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBX010000001.1 Pseudomonas aeruginosa strain 152609 15-2609_ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 539485 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 539545 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 539605 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 539665 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 539725 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 539785 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 539845 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 539905 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 539965 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 540026 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 540086 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 540146 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 540206 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 540266 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 540326 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 540386 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 540442 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 540502 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 540562 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 540622 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 540682 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 540742 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 540802 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 540862 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 63585-62657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBX010000038.1 Pseudomonas aeruginosa strain 152609 15-2609_ctg_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63584 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 63524 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 63464 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 63404 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 63344 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 63284 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 63224 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 63164 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 63104 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 63044 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 62984 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 62924 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 62864 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 62804 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 62744 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62684 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22152-23740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBX010000046.1 Pseudomonas aeruginosa strain 152609 15-2609_ctg_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22152 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 22212 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 22272 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 22332 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 22392 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 22452 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 22512 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 22572 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 22632 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 22692 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 22752 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 22812 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 22872 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 22932 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 22992 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 23052 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 23112 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 23173 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 23233 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 23293 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 23353 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 23413 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 23473 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 23533 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 23593 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 23653 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 23713 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //