Array 1 1-510 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSC01000006.1 Dickeya dianthicola strain RNS 11-47-1-1A contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ TACGAGAAAAACAGCAATGTTATCGGAGGCTA 61 28 100.0 33 ............................ AGATTGTGAAAGAGGTTGTGGGTGTTGGCGGAT 122 28 100.0 32 ............................ ATTTGCGCCAAGAGAGCCGTGCGCCATGCGCC 182 28 100.0 32 ............................ CACCCGCGACGCCCGTCAGAATCTGACCTGAT 242 28 100.0 32 ............................ TGCCAGAAGTCTAACGTGCGGGCTGACACACC 302 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 362 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 422 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 482 27 85.7 0 ....................G..-..CG | AG [500] ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.4 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : | # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 61814-60000 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSC01000013.1 Dickeya dianthicola strain RNS 11-47-1-1A contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 61813 32 100.0 34 ................................ AGTGAAACTGTAATCATGTTACCCCCATTAACCC 61747 32 100.0 33 ................................ TCTTGGAACTCTTTAGCGAACTCTACTGAGCAA 61682 32 100.0 34 ................................ TGAATATTAGCAATAGCAATAGCAGCAACACCTG 61616 32 100.0 34 ................................ TTCCGGCAGCTCGTCGGCACCATCGATATATTCA 61550 32 100.0 33 ................................ GATGTATTCGCCGCCGATGTTGGTGGCAACCAT 61485 32 100.0 34 ................................ ATAAAATAACCCAGCTTGTCAATGTCATGGAATT 61419 32 100.0 34 ................................ ATGCTGTTGACAAAATCAGCCGCCCATTTAACAG 61353 32 100.0 34 ................................ CACCCAATGGGCTTGCGCCGATAGTTTTGATCCT 61287 32 100.0 35 ................................ CCACATATCGATAAAGCGACGGTCGGCAGTCACCA 61220 32 100.0 34 ................................ ACCAATGAATCGACCACTTGCCCTTTGATGTCTT 61154 32 100.0 34 ................................ CAGAGATCGACGATATCGACAAGCGTCTGTCCAT 61088 32 100.0 33 ................................ CGCCGGGATCTGAATACCTTTCACCACTGCCGC 61023 32 100.0 34 ................................ ATCTTGCCGACTTCCTTCCCGCCGGTTACCGCAT 60957 32 100.0 34 ................................ ACAGAAGCGAGGTCGACGCCCAGCTGGTTGGCCG 60891 32 100.0 34 ................................ AGGAACTTGCCAGCCGGATACTCTTTCCCACCAA 60825 32 100.0 37 ................................ TAACGGTACTATTATGCCTGCGAACATGCTGGAGCAG 60756 32 100.0 33 ................................ TTAAAATAATCGAATAAAACAACGTAAGTACTT 60691 32 100.0 33 ................................ ACATCATCGCACCGTAAGGAGCTAGTGAGTCAC 60626 32 100.0 35 ................................ TCTCGGTTGCTACACTCTCTATCCCTCTCTCTCTC 60559 32 100.0 34 ................................ GGTGTACACCCATGTGATGTGTACTCCTGCGCCC 60493 32 100.0 34 ................................ TGGCGATTCCTGATGACCAGCCTCTGGTTGAGAA 60427 32 100.0 35 ................................ TATTGATCCCGCGCATCAGGGTCACAAGTATCTCC 60360 32 100.0 35 ................................ CGAATCTGTCTTGCCGTGTGGTGTATATCTTTTTG 60293 32 100.0 34 ................................ TCTTTATGCGTTAACAATCACAATGCCGTCACCG 60227 32 100.0 34 ................................ CGCCACTGGCTCCCATGCCTTGCGATAGGTTGCC 60161 32 100.0 34 ................................ TTTGAGTAGCGCCAGCGTTTCATCACGTACCGCC 60095 32 100.0 33 ................................ CAGTACGAACCGTACATCTTGTCAACTAGCCAC 60030 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ===================================== ================== 28 32 99.3 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAGGACGCCAACGGCCCCCGTCGCCTACGGCAGCTGGCTAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTGTTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTCGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 153758-153249 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSC01000015.1 Dickeya dianthicola strain RNS 11-47-1-1A contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 153757 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 153697 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 153637 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 153577 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 153517 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 153457 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 153397 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 153337 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 153277 27 89.3 0 .......................-..CG | GG [153254] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGGCTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCTGCGTGGGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCAGCGGCGTAGTTTAGCCATCAGCCAGTGGTCAATGAGAGGCGGCGTTTGAGCCTCTCCTTGTCGTGCGTGCGATGAAATGGCAGAGAAACGCCATTGTTTATCCCGCACGAAACATCTCACGCCACTGACATCTATTCGCTAATCAATAACAAAACAACCCCGCTGTTTGTCAACAGCCTCATCCCCTCGCCGTTTCCTGCGCAGGAAAAAAATCCCCCGGCCGTTAGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCAAATGCGGCAGCCACGCGCTGCACGTTGTGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 162473-163942 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSC01000015.1 Dickeya dianthicola strain RNS 11-47-1-1A contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 162473 28 100.0 32 ............................ ATGCACGCCCTGTTTAATGAACCGCTGGAAGG 162533 28 100.0 32 ............................ TACATTACTCAACTAAGCATCGCTGCTTAGGT 162593 28 100.0 32 ............................ GCCAGAGGTTCTGATGCTCCGGCCGAATTCGT 162653 28 100.0 32 ............................ GGAAGAAATTCTGAACCTCGCTGATGACGAGC 162713 28 100.0 32 ............................ TTTACAGGCACGGGCATCCAGAATCTCTTTCA 162773 28 100.0 32 ............................ AGATTGCGTATTTCCGCCAGAGGTTCTGATGC 162833 28 100.0 32 ............................ TCTGCGCCGTTTTAGGATGAGCAAATTCCTCA 162893 28 100.0 32 ............................ ACGAATGGGATAGCCGCTGCCCGGTGCTCCTG 162953 28 100.0 32 ............................ AGTCTGAGCAGGTGAAGGGGGTGCAATCTTGA 163013 28 100.0 32 ............................ AGCCTGCCGGATAACCTCAGCGTCGGTGGCTA 163073 28 100.0 32 ............................ TTAACGGACGGCTTAACGCGTTGGCCGTTTGG 163133 28 100.0 33 ............................ ACGACAAAAACCCGGCAGGAAATGCGATCTCGC 163194 28 100.0 32 ............................ TGGCCGAACTGGCGGAGGTAGCCAACCTGAGC 163254 28 100.0 32 ............................ GTTTCATGCGAAGCCTTTGCAGCAACGTATAC 163314 28 100.0 32 ............................ CGATTCAGAAAGTCGTAGTGGAGGTCGTCGGT 163374 28 100.0 32 ............................ TCCAGCAACGCGGAGCGGCCCAGCGACAGCTT 163434 28 100.0 32 ............................ GGCGGGAGTAGTTTGCACGGTGGCGTCATCAA 163494 28 100.0 32 ............................ GCCGGAAGCCGCGTTGAACTGGTCGGTTTTCT 163554 28 100.0 32 ............................ GTCTAAGTACCGACATGAGTACTGCCAGTCAA 163614 28 100.0 32 ............................ TGTAATATGTTTGCGGATGAGTAAACAAAGGC 163674 28 100.0 32 ............................ TTCATATCTGCGAGAGCCATAATCTCTTATCC 163734 28 100.0 32 ............................ AAATCAGACGCGCATTCTGTCGGTTGTCGGGA 163794 28 100.0 32 ............................ GACGGGATGCCGAAATGGCGCCCACGGCAACC 163854 28 100.0 33 ............................ TGCGATACGCCAGCCGAGGCGGAAACGTCAGTA 163915 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : AGAGGCGTGAAGCCTCCAGCCGACGACAAGAAGTTCACTGCCGAGTAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //