Array 1 182155-181817 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQNV01000012.1 Lactiplantibacillus plantarum strain Lp201 201_contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 182154 28 100.0 33 ............................ TACGCTGTATTAGCCCCATTTAATCACCTACCA 182093 28 100.0 34 ............................ TCACAACTTTGCTCATATTCGTGGCACCCGACTA 182031 28 100.0 37 ............................ TAAACGATGACTTAGTTACTTATATCACGGACTGGAA 181966 28 100.0 33 ............................ TATGGTATTTTTCTCTCATCTCATCGCTTCCAT 181905 28 100.0 33 ............................ CGTGTCATTGTAGATAGGTGCTTCTGGCTCAAC 181844 28 92.9 0 .......................A...T | ========== ====== ====== ====== ============================ ===================================== ================== 6 28 98.8 34 CTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : AAAACCGGCGCCCAATCGATCTTAAAAAACTAACCAAGAAACGCGGAATATTTGCTTGGAAATGGATGTACTCAAAATCCTACTACCACACGGCCGACATGATTAGTCAGCACAATATCTTAGAAACCATTGCGGGTTTGCTTTGACCGTGGCTTGCTTCAAAGCACGCTATCACAGACACTACGGCCAATCAACGCGCTTAGATTGTGGCAGGCCCATCAACTTATCGAGCAGCATCATATGATTGGCAAGGTAGTTATTGAAGGATGGAAATGAGTTGGCGTGTATTACGGCTCGCGCGATAATGATCAACTTTAACTCGCCAAATACGCTGTCCTGTTCTGTCTTTTGATGCTTACAACTGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGAGCCATACCTTATAGTCAAAGTAGTGGCGATTTTGCAAGTTAACTAAAATTCCTTGTTTTATTATTTTTGATTGTTGATTTACCGGGATTTATTTAGT # Right flank : AAGTCATTAAACTTTCCAGTCCGAACCAACGTCAAACCTATGGTATCAGACTCGCCCATTTTAGCATCATTCCCCGCTAAAACTGCCAAACTTTCTTTTTCAGTTTCCAAAATATTAGTGCTATGATGATAGCATCAATTTGACTAAAACACTTAATCAGAAAGGACTTTGAAATTGGCATTTAAAACACCACTGGCTGATCAAATGCGCCCGCAATCACTGGAACAGATGGTCGGGCAACAGGATCTGTTGAAGGCAGGCCAGCCATTACGCCAGATTATTGATCAACATGTTAATATTCCCCTCATTCTGTGGGGGCCGCCGGGAACTGGCAAAACTAGTTTGGCGCAGATTATTGCGAGTCAAGACGATTATCCATTCGTGGCTTTTAATGCTTCGACCGAAAATAAGGCACAGCTGACGAAAGTCATCGCACAATACCCAGAGCAATCGTTTGTTCTATTAATTGACGAAATTCACCGAATGACTAAAACATTGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 187219-186640 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQNV01000012.1 Lactiplantibacillus plantarum strain Lp201 201_contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187218 29 100.0 32 ............................. CAACCGCCATTATCCAACCAATTCGCTAGCTG 187157 29 100.0 32 ............................. AACATCAACATCGAAAGCCCATTGGGACTTGG 187096 29 96.6 32 ............................T ATTTTGAAATCAATGTAGGCGGTCATTATGCC 187035 29 96.6 32 ............................T TGCGAAACAGCTAGTGCAGTTATTGCCGGGTA 186974 29 100.0 32 ............................. AGTGCGTCAAGGTACTGCTTGAACGTATGCGA 186913 29 96.6 32 ............................T ACCAGCGACCGCCCTCATAATCATTCTTAAAT 186852 29 100.0 33 ............................. GGACAATCGAGCCAGTAACCTGTATTGGGCTGA 186790 29 100.0 32 ............................. ACGATCGACACTTCTAAGTATCCGAATGGTGG 186729 29 89.7 32 ................T.......C...T TCTAAACCCGTCGATTTCGACTGGTTTAAAAA 186668 29 86.2 0 ...............A.......A.C..A | ========== ====== ====== ====== ============================= ================================= ================== 10 29 96.6 32 CTATTCCCCGTGTATGCGGGGGTGATCCC # Left flank : TACTGGTAGTTATATACGAAAAATAATAATTGTACCGTCTAATCTCAGTTCACTAAAATTACTTTCATTGGATATTTACTTATCTTAAGTTTCTGCGGCCTGTAAAACAATTCAAAAATTAACTATATCTTATACTAACATTTAAATTCTAGAGGTTCAGCTTCGGCTTGATAAAACGTCGCTATCTTTGTCTCAATTATTTATGTGAGCAAGAATCGTTGAAACAATAAATAATCTGCGCTACGGATGAGATATGCCTGCTGCAAGCCTAGTACTTGGGCCCACCGCATAGTTATTAATCATAAATTTATCTCTTAGCATTTTGTATCACATAATTTATGCAACCTAATAATCTCAATCAATACTCACAACAAGTACAAATTCTATACATTGAAGGCCGCCTTGCTTGTTTCGTCATATTAATAGTGTTCATTAAGCAAGTTGACTTAAATCTCTCAAGTACTAATTTGATATTACTGCTATAATAGGCTTTGTTTAGT # Right flank : AACAAAGCCATAGATAAAGCAACAAATCACTTTGAAACAAATACGACTTTACAGATATAGACGTGCACACTTTACACATCAGCACGCTACAAAGTCTCACTAAACGTTTAAAGAACCGTCGTTAATCAACTTATGTGTTAACTCCAGTGTTGCCTTAGCATCTGAAAGCGCGTTATGTGGCCTTAAGTTCACAATTTGATAATCTGCTAATACCGTTGACAGGCGATAATTATCCAAGAAGACATTTGTGCGTTTCACAATGGGCATGAGATCTGTTGTGTGATTGGTCAGTCCTTCTATGTCATTTTCTATAAATGCTTGCTTCAAGAACATTTCGTCAAAATGGAAATTATAGCCTACGATTACACTGTTACCAATAAAGGCCTTCATTTCACTCAACGCCATAGCTATCGAAACACCTTGCTCATTAAGCATGTCACGTGTAATCCCAGTAAGTTCAACAATTTTTTGGGACAACGGTCGATCAATTTTTATTAGTC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 195521-195796 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQNV01000012.1 Lactiplantibacillus plantarum strain Lp201 201_contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 195521 29 100.0 33 ............................. GACTGACATTGCGAAGTTGAGTGATCGCGATGG 195583 29 100.0 32 ............................. GAGCCTACTGCTGCTAAAGATGCAGTCGCTGC 195644 29 100.0 32 ............................. CATCATGGGAAGTTTTATTTGGGGAAATATTA 195705 29 96.6 33 ............................A CGTGAATTTTGCCATTACATTTCATCCTCTCCA 195767 28 96.6 0 ............................- | TG [195791] Deletion [195795] ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.6 32 GTGTTCCCCATGTATGCGGGGGTGATCCT # Left flank : GTGACAATTGAACAACAAAAGCAATGGCTGGCAGACCGAGCAATCCGGGCTGGCTTTGAGTTGGTTGATCATCGTGAGACAACATCTGACAAGATTCACGAATTCGCATTTGACGTGGTGAGTCATGATTGGCCCATGCTTCACCGAGCTAAAGGGCACGGCGTTCGCTTAAGTCGTGTGACATTTGAAGGACTCCTATGTGTCAAAGACCTACCAACCTTCAAGCAAACCTTGACGAGAGGAATCGGCCGTGAAAAGGCATTTGGTATGGGGCTGATGACGGTCATTCCTGAAGTACAGTGATTGACTTACATCGGTGTTTACTGGATTGGTGAGCCTGGAACCAATGCTGACGAACCAGGGATGCGCTAGTTTTTATCGAGCGTATTAGTCAGGGGTTAGTTTTACAGTTCGTCCGTGCTTGCTATCCTCGAAGTCAAGTTAACTTATTTTTAGTGTTTGGTATTTTCAGAAAGGCTTGGCGGCGGGATTTGTCAAGT # Right flank : CTTGGCTTGAATGCAGCAGTGACCCGCACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAATTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGGATTAGCGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTGAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACACCGGCGAACATCTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAAGTGACGAGCGAAATCAGGAAGATCAGTGTTGAGACGAAGAAGAATAGGGACCAGATGATGCTCAGTGTTTGATCAGTGATAAAAGCCCATTGTTTCAAATACTTGCCTGGATGAGTGGCAACCCGTTTAAAGTTGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //