Array 1 3383326-3384664 **** Predicted by CRISPRDetect 2.4 *** >NC_015577.1 Treponema azotonutricium ZAS-9, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 3383326 35 100.0 38 ................................... ACGGAGGGTTCCAGTATTTGCAACCTCGGACCGCTCAA 3383399 35 100.0 37 ................................... CCAACAGAAAGACGGAGGTATGGGTATCTACGTTATG 3383471 35 100.0 37 ................................... GTTATCCTGCCCAGGTGCCAGCTACCTGCGGATACCA 3383543 35 100.0 38 ................................... GCTTTTGGATTCGGCCTCTTCGACAACGGGTTCAGCAG 3383616 35 100.0 37 ................................... ACTACTACGCGGTCTCGGCCTCTTCAGATTCAGCTAC 3383688 35 100.0 37 ................................... TCGGAACTTGTTAAAAGTTCAACCTTTTTTCCTAATT 3383760 35 100.0 36 ................................... CAGTTTTTGTTTGATCATCGATCGGATATGGATCGA 3383831 35 100.0 38 ................................... TCGATATCAGAGTTTACAATGGGTTTTCTTATAAATGA 3383904 35 100.0 39 ................................... CATGTTATCAATCTGTTCTTTAGCTTCAGGATAGTTCTC 3383978 35 100.0 38 ................................... TGATGGTCCCACACATGTATCCGCACCTTATTCCTAAC 3384051 35 100.0 36 ................................... TCGCCACCTTTCGAGAACATCATCATCTGTAACATT 3384122 35 100.0 38 ................................... ACTTTAACTCCACCTATCAACTTTAATTTCCCTCTAGT 3384195 35 100.0 36 ................................... AGATTCCTCTGATATTTTGGGTGAACATTGAGTTTT 3384266 35 100.0 36 ................................... TCAACGGGTGGCAGAGTTTCGGGCGGCTCCGACAGT 3384337 35 100.0 37 ................................... CTCGATACAACCCAAGCGATCATCTTTTCGTGCAGAA 3384409 35 100.0 36 ................................... AGCATCTTCCGCCAATCGATACCTGCCCATACACCA 3384480 35 100.0 41 ................................... TAGCGGCATCTTTTTCGGCCCTCGCAGCCAATCTGCGGATG 3384556 35 100.0 39 ................................... GACTTCTACATCCAGCTCTTCAGGTTTGAATGTACGAGT 3384630 35 91.4 0 ...............................T.CT | ========== ====== ====== ====== =================================== ========================================= ================== 19 35 99.5 38 GTCTGAACAAATGACCTGATTAAAGGGATTAAGAC # Left flank : GCAATGGACTCGAAGGCAAACCCATACGCACAGGCCGAACTGAACATGCAGCTCCCGCAAACCGATCCATGGGCAATGCAGCAAATCCGCCTGAGGTGCAGCCCCATGACGCTCCTCACCACAAAAGCCGGGGGCGCCAGAAACCTCGCCTTGCCGTTAAACTCCAGTTTGAAGGCAACTTTTTTATAAAGCAATCGCATCATATCAACTATAACCTTACCCACCCCCTGCGGATAGTATCCCCCTTGACAAAGGGAGGCAATCTGCCCAAAAATTATACTTGGTACTGGTATTCAACAGAAATCGCAAACCTCGGATTTGCTTAAAAACCCCTAAAAAAGGGGTAGGTTTGCGAAAGTTATAATTGCTTACAGGATAAGGAATTATGGAAAAAACGAGCGGAGCGGCATTGGGCAAAGAGGAAAATCCTGGTTTTTTGAGGGAGGTATGCGAAACAGGGCTTATAAGTCTATATGGGATAAGGAATTATGAATGGCAAT # Right flank : TTATAAATGACACTTTTTTACCCGACGATCTTATAAAGATGCATTAAAAACGTTCGTACCGTTAGAATGTTTTTAAGCGGGGGTATTTATGCCTGTGGTATATGTCATTTCAGATCATGGAAGGCTTCATAAAGCGAATGAAATATTCGAGTTTACTGATGCCAATGGCGATACAAAGAAAATATTTCCCCATACTATGGAGAGCCTGATCATAACAGGCATGGTAACCATTACCGGCGAGGCGATGAGGCTTCTTATGCAGCATCAGATTAATACCCTGTTTGTCAGTCCCAATGGGAAGTATAATGGAAAGCTAAATTTTGCCAATGCCAAGAATATATTTTTAAGAAAAAAACAGTATGCCATTTCTGACAATGACGCCCTGGCGCTGCCCATTGCAAAATCCATCGTACTGGCAAAGATAAAAAACGAAATAAGCTTTGTTCAGCGCATAAAACGCAAAAACGGTTATGATGATGAATTTAGCCAGGCGATTCAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAACAAATGACCTGATTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 3386208-3386386 **** Predicted by CRISPRDetect 2.4 *** >NC_015577.1 Treponema azotonutricium ZAS-9, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 3386208 35 100.0 37 ................................... TGCCAGTGCAGTTCATTAAGTTAGTGCAGTTATAGAG 3386280 35 100.0 37 ................................... CTTCCGGTACTGTTCCGAACATTGCCATCTTCATTTG 3386352 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 99.0 38 TCTGAACAAATGACCTGATTAAAGGGATTAAGACG # Left flank : GCATTTTAAAAGGGTACTTATGGGGGAAGAAAGTGAATACCGTGGGTATCTGTACAAATGACCTACCTTTTTGCCTATGACATATCCGACTGCCACCGCCGGAACCTTGTTGCAAAAAAACTTGAACAATTCGGTTTTCGTATTCAAAGGTCAATCTTTCAGTGCGATGTTTCTCCCTCGGTGGCGGAGGATATAAAACTTGCGCTCCGACGGTACATAAACGAAAAAGAAGACAGTCTATTAATCTATCCGCTTTGCGCAGACTGCCTGGAAAAAGCGTGCATAATCGGCAATAGAACGCTGCCGCCTGTTTCAAGCTATGAAATACTCTAAAACGGCCCAGACCTTGACAAAGGGAGGCAATCTACTCAAAATTATGTTTGGTATTAGTGTGTAATAGAAATCGCAAACCTCGGATTTGCTTAAAAACCCCCAAAAATGGGGTAGGTTTGCGAAAGTTATAATTGCTTACAGCACAAGGAATTATGAAGGGTAACGTA # Right flank : TAATTTCCTTTCTGTTACAGTTGGAAAAAGATTACTGTGCTAAAAAGCCAAAAAAATTTACAGAAAAGTTATTTGTTAAGTGTTAAGTTTCTTATTTTTTGCACTATACAAAGATGTAGAGGGAAGACAAAATAAAGGAGAGAGATATGAAAAGTTCATTTTTTGGTATAGGTAATAGTTTTGGATTCTCTAGGTCAATTTTTGAAAATATTGGGAAGTCACCAAAGAAAGATACACTCAAATCCAAATTTATATTTAGGGAAAGACCGATTTTGATATTTGACCCTGGTACAGGAAATGAACCGAAAGTACCAAAGGATGTTTCCGAATTCAAGAAATAACATTTTGCCCCATTTCTCAACAAGCGGATTGTAAAATATTATTCACAGTCAAAATCTATATTATACTTCTTTATAAGATCTCTTAATTGCGGTCTTAGCCTTTCCTTAAATATGCGAACATCTGCACTTACACGTTGTATTAACTTATTATGCATAGCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTGAACAAATGACCTGATTAAAGGGATTAAGACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //