Array 1 575-2638 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNNO01000885.1 Xanthomonas oryzae pv. oryzae strain OS189 scaffold884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 575 31 100.0 34 ............................... TCATCGGCGGCCACGATCTTAAGAACGGCGCCAC 640 31 100.0 36 ............................... CGCCAGGGGTATCGCCTTACGCTCCGCACTATCAGT 707 31 100.0 34 ............................... TCGGCCACACTGGCCGAGTCATTGAAGGTCATGT 772 31 100.0 34 ............................... CGAAGTTCATCCTGCGCTTCTTTGATCTTCTCAT 837 31 100.0 36 ............................... CACGACACCCAGCACAGAATTGCAGCCCCTGTGTAA 904 31 100.0 35 ............................... TCCATTGCCAGCACATCCACCACATTGTACTTCCG 970 31 100.0 35 ............................... ATCTCGTGTCATCAGACCATTGTTGACGAGCTGGC 1036 31 100.0 35 ............................... CCACCAAAGTTACCACGGGCATACCACTGTTTGAC 1102 31 100.0 34 ............................... CTGCGCAAAGTGGCATGGTGTAGACACTGTGCTG 1167 31 100.0 34 ............................... CTGAGCGTCGAACACTATTTGAAGCACCTCGCCA 1232 31 100.0 33 ............................... GTCCAGCAGTATGCAGCACAGGCACGGATTGCC 1296 31 100.0 34 ............................... TAGCAGCTGGCGATGCGGGCCCGGGGGGCCTATG 1361 31 100.0 34 ............................... TGGTGCTGCTGCCGCTGGAGGCCCAGGCGTAGCA 1426 31 100.0 34 ............................... TGGTGCTGCTGCCGCTGGAGGCCCAGGCGTAGCA 1491 31 100.0 35 ............................... GTAACGGTCAGTTGCAGAGTGTCTACTACCAGATT 1557 31 100.0 35 ............................... TGAGGTGCTGGAGTCCATTGCACTGGTAGGCTTTG 1623 31 100.0 36 ............................... CGCACTATCCTTAACAACTGCCGGGTGTTGGTTGGA 1690 31 100.0 35 ............................... GGCATCGGGGCAGCTGGTGGATTTGTTGCTGCGGG 1756 31 100.0 34 ............................... TGGCTTCAGATGATTATGGGCGACCAGGCTGACA 1821 31 100.0 34 ............................... ATGATCACCGGTGCAAATCGTTTTGGGTACGACA 1886 31 100.0 35 ............................... CTGTCAACCAGAGCAACAACACAAACCGCTATGAT 1952 31 100.0 34 ............................... TGGCCGCCTTGGATCTGGACCAAAAAATCCTGTA 2017 31 96.8 33 ...A........................... TGGGCTAGACACCGTTGCAGAGCATGGATCGGA 2081 31 100.0 33 ............................... GTGCCAACATAGACACTGGTATCGCCAGCTGTC 2145 31 96.8 36 .....A......................... CCAACCTTGCTAAGCTTTGCAACCTCAGCCAAGGCG 2212 31 100.0 35 ............................... ACCAACTGACTGTAGTAGCTGCTGCGAGCGGCACT 2278 31 100.0 35 ............................... CCTCAATAGCGACCCGCCTTGCATCATGCCACGCC 2344 31 100.0 36 ............................... ACCGGATCATCAGCGATCTTGCTAAAGTTACTGATC 2411 31 100.0 35 ............................... TTGAAAATTGCTGAGTATCCGGAAGAGGTGCATGC 2477 31 100.0 34 ............................... AGTTGCCTACATGACCTTCAATGACTCTGCCAGC 2542 31 100.0 35 ............................... GACAACCACGCACCCGGGCGTGCCTGCACCGCCCG 2608 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 32 31 99.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GATCGTGCCCGACCGCAGGCTCTGCCCCTTGCGCGACAAATGGGCGTTGACCGCTTCCAGCATCCGAGCGGCAATGCCGTGGGTTTCCAGCAAACGGCGAAAGTTGAGAATCGTGGTCTCGTCTGGAACGTTATCCAAGCCGCCGAGCTGGGCAAAACGCCGCAGGGTCGGGATCTCGTGCAATGCCTCTTCCATCGCCGGATCGCTCAACGCATACCACTGCTGCAACAGATGAATCCGCAACATCGTCGCCAGCGCGTACGGCTGCCGACCCGGTCGTCCTGACACCGGATAGTGCGGCTCGATCAGGGCAAGCAGTCGCTTCCACGGCACGATGCGCTCCATCTCCGCAAGGAAGATCTCGCGCCGGGTCTGCTTGCGCTTGCCCAGGCCCTCGGCGTCACCGAACGTCAGTTGCATGGATGCCTCCTCATTCCGAACAAATAGTGTCTCGCATTTGTGGTGCGTTGTTCAGAGGTTCCCTAGGGCTACTGGCAGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCCTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8441-10829 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNNO01000951.1 Xanthomonas oryzae pv. oryzae strain OS189 scaffold950, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8441 31 100.0 35 ............................... CACCGTGCGCGCCCAGATTTAAGGCGATTGAAGTG 8507 31 100.0 34 ............................... CCTGGTCCGGGCGAGCAGCCCAGATGATGCTGTC 8572 31 100.0 35 ............................... ATAACTCTCTCTCCATATCAGTAGACCCCTACACG 8638 31 100.0 35 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 8704 31 100.0 34 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGC 8769 31 100.0 35 ............................... TTCCCAATCTCGCCAGGCTTGGCGGTCTCATACCC 8835 31 100.0 34 ............................... TTCGCCGGCTTGGGCCTGGAACTTGACGAAAAGG 8900 31 100.0 34 ............................... CAGAGCCTGGAACATTACTTGCAGTACCTGGCGG 8965 31 100.0 34 ............................... GCGGCGAATATGCTTGAGTGGCCGGTCAAGGACG 9030 31 100.0 35 ............................... GGTCAGGTATTGGGCTAGCGGCTGTGTCAACACCA 9096 31 100.0 35 ............................... TGCATTGCTGTTTGGTGGCAGCATCAAATACAAGT 9162 31 100.0 35 ............................... AGAAGTGCCTGCTAGAGTTTGCAAAAGGAATGCAA 9228 31 100.0 33 ............................... TTGAGAGTAATTCGGTGCACACGCATGTCACGG 9292 31 100.0 35 ............................... CAATACAATGAAGCACATGACCACACATTGACTTT 9358 31 100.0 35 ............................... TATGTCGGTGGCAAGAAGTCCGAAAAGCAGCTGCG 9424 31 100.0 37 ............................... CGAACATTGTCAACCCTCGCCACATTAATGCCAGGAG 9492 31 100.0 35 ............................... CCGCGCGGCAAGCCGCGTATTCCAGCCGCCTATGA 9558 31 100.0 34 ............................... CGGTGTATAAGGGACGGTATCGTTGTTGACAAAC 9623 31 100.0 36 ............................... TGCCATTAAGGCAGAGGCACAGGACCAGAAGAAGGC 9690 31 100.0 37 ............................... ACTATAGTCTTTGATGTGCCTTCTGTCGCTGGGAAGA 9758 31 100.0 33 ............................... TATGGCTGATATTTATGTTGCCCGTACTGGCCT 9822 31 100.0 34 ............................... GATGATGAAGACCTGTTCGCGGTGCGCGCGCAGC 9887 31 100.0 34 ............................... ATGAAGGTTCCGTCTGGCGGTTCGTGTCCGGTGT 9952 31 100.0 34 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGG 10017 31 100.0 34 ............................... TGTCTGGCCCCTGTCTGCTTATCTAGCTCCGCAA 10082 31 100.0 35 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 10148 31 100.0 34 ............................... TGCGTGGTACTGGTGCCAATGATGGTCTGCTGGG 10213 31 100.0 35 ............................... AATGACTCCGCCAGCGTGGCAGAAAATGCCCCGAT 10279 31 100.0 33 ............................... TGTATTGCCCTGGCGTAGACCCCTGCCACTCTG 10343 31 100.0 34 ............................... GATGTACCTGCTAGCCTCTAACATACATGCGTGC 10408 31 100.0 33 ............................... CATACTTACGCCCCCGAAAATCGCAAAAATAAA 10472 31 100.0 33 ............................... CCTGCCCAAGTCTGCTGCCTGCAATGCCTCGTG 10536 31 100.0 35 ............................... TTACCGATGTTGACAGCCAAGCGGGTGGGGCACTA 10602 31 100.0 34 ............................... GCACACCGCAGGAAGCACAGACTGGACAGCTGGC 10667 31 100.0 36 ............................... GACACTTAACAGGGTGAGAGATCTCCCAGACACTAG 10734 31 100.0 34 ............................... CCGGTCCCGGCACCAGAGGACATCACCCTGTCAA 10799 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 37 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : TGGTTGGAGGGCGCACTAGGGAAGGTCTGAACAACCCATCAAACCTCTAAAATTCCAGCTTCTTGCATTTCAATGACTGGAAAAATGCTGAGTCGGGTGCGATTTTTGCAACGTTCTGGCGGTTTTGGCTGCCGCCAGGCAGCATTATCCCCTGGCCGGCAGCAAGTGCCGGCGCACCATCCACAGATTCGACAGCGCAAATAACGTCTGCACCTGTGCGGTGTTCTTGGCCAGGCCGCGATAGCGCACCTTGGTGTAGCCGAACTGCCGCTTGATCACCCGGAATGGGTGCTCCACCTTCGCGCGCACGCTTGCCTTGAAGTGTTCCCAACGTTCTGCCCAAGCACGCGCGCGCTTGTTGCCAATGGCTTGAATCGTGGAGCGCTTGGCGGCAATGAAAAATGCAGCCTCGCAGCTCTGCAACTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //