Array 1 6586-11113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMZ010000062.1 Clostridium perfringens strain CP-14 62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 6586 29 100.0 37 ............................. TGGATACAGAGGGTTGATAGTGTCAAAAAAGGTTTTT 6652 29 100.0 36 ............................. TTATTTTTTTAGAAAAAAGAGAGGTGTATTACAATG 6717 29 100.0 36 ............................. AGGGTTGTTTAAGCTTATGTTTTTCTATAGTATCAT 6782 29 100.0 37 ............................. TAAACCAGCAAGACCATTTTAAGATTTTCACACTAGC 6848 29 100.0 37 ............................. TTAAAAATGCTATGTTAAAAGCTAATATAAATTTAAG 6914 29 100.0 36 ............................. TGTCATGGTTTAGGTGATTTAAATATCTATGGTGAT 6979 29 100.0 36 ............................. TAAGTGGTACAAGTAGTTTTAAAGCGCCAGTAAATG 7044 29 100.0 37 ............................. TCTTAAATGGCTTTATGATAGCTTAGGAAGGCAAGTA 7110 29 100.0 37 ............................. CGAAAGAGGTGTATTTTTATTGTGTAAATATGGTATA 7176 29 100.0 36 ............................. GTCTACTTTGTCATCTAATATGATTGATATATCTGT 7241 29 100.0 36 ............................. TTATAAGAAATAAAAATTAATCACTTACTACATTTA 7306 29 100.0 36 ............................. ATGATAGACGACGTTAAATTAGAAAAGCAACTAATA 7371 29 100.0 36 ............................. TCGCTTATACCTTCATCATAAAATCCGACTATATTC 7436 29 100.0 36 ............................. AAAGAGTTCGTTTCTAAGCAACAATACAATAAGAAA 7501 29 100.0 37 ............................. ATATCAATACTTTCATTTTGTGCTTTTTCTCCATCAG 7567 29 100.0 36 ............................. CTATATGAGTTTATAATGGTACTCTCTTCTAGTTTT 7632 29 100.0 36 ............................. GATTCTACAGAGTATGCTCAACAAAAAGAAAAATTA 7697 29 100.0 36 ............................. TAAAGAAAAGCAAGATAAGTTAAATAAACTTAATGC 7762 29 100.0 36 ............................. TAATTGATGATACAAATGTATCATACCAATGGTATC 7827 29 100.0 36 ............................. GGTTATGGCAAGACTATGGCTATGAGTCAAGAATTG 7892 29 100.0 36 ............................. TGGGAAGATGTAAAGCCGGTTGATAAGCCAGTTGAT 7957 29 100.0 36 ............................. TTTCATATATCTTATACACATAGTATATTAACATAA 8022 29 100.0 36 ............................. TATTTTCTAAAGTGAATATTTGAATATTTGCTTGAG 8087 29 100.0 35 ............................. TTCCAAAGGTGTAATATAATCATCATAGCAAGAAA 8151 29 100.0 36 ............................. TTTTAAAATTATTAACTTTTCTATGTCTTATCTCAT 8216 29 100.0 36 ............................. AACACGGACTACACTTTAAATTTTCATTATTGCGTA 8281 29 100.0 36 ............................. AAATTTAAATATAAAGATAGAAGAAAAATATCTATT 8346 29 100.0 36 ............................. TTTTAAAATTATTAACTTTTCTATGTCTTATCTCAT 8411 29 100.0 37 ............................. AATTTTTTATGGATGGACAAAAGTTTTAAAAAAATAG 8477 29 100.0 36 ............................. CTATCCATATAGTTTCCATTTGCTATAGCTACAACA 8542 29 100.0 36 ............................. GTTCGTGATTGTATTGTTTTTGATAGTGAAGATGAT 8607 29 100.0 36 ............................. CCTAAAATAGTAAAAATAGCAGCATTAATATCTCTC 8672 29 100.0 37 ............................. ACAGATGGATATGTAAGATATGAAGGACAACAATCAG 8738 29 100.0 36 ............................. TAACTTTAACTCTTAGCTTTTCTTCCTTCGGAATAA 8803 29 100.0 36 ............................. TTGTATTGTTAGAGTTTATGCACTTACCAAAAATGG 8868 29 100.0 36 ............................. AGCTCCATGCTCTCATATTTATCTTTTAAGAAGTCA 8933 29 100.0 36 ............................. ATGGAAAGTGACATAGGGAAAGAAGAATTTGTACTA 8998 29 100.0 36 ............................. AGTCGTGATCGTTTAGTTTTTGATAATGAAGAAGAA 9063 29 100.0 37 ............................. GTTGATAAACCAACTGATAAACCTGTTGATGGTACTG 9129 29 100.0 36 ............................. TCACTAGCAAGATATCTCCTATGGTTACCAGCTACA 9194 29 100.0 36 ............................. ATAATAATTAGAATCTTTATAAAGCCATTCATTTTT 9259 29 100.0 36 ............................. GGTATAAGTCAGCTTGATTGGAAATTGCCTCTTTAA 9324 29 100.0 36 ............................. ATTCAATAAAATGTCTAAATCATTATCTATAAGTGA 9389 29 100.0 36 ............................. GAGTTATCTTTAAGTATTTATACTGAGGCTTGATAA 9454 29 100.0 36 ............................. TCAGTATGCTTAAATATCCTTTCCCCTTGTACTTGC 9519 29 100.0 36 ............................. CACTTTTAGCCCCTAACTAGGAATGCGGGCGGTTGC 9584 29 100.0 36 ............................. GTTTGATTAGATAAGGCAATTATTCCTTTTCTTAAA 9649 29 100.0 37 ............................. TTACAAATCCATTCATCACACTATACCCTCCATAACT 9715 29 100.0 36 ............................. AATGGTAATCAAGCCTTATCAGGATATGAATATAAG 9780 29 100.0 36 ............................. TTTAATAAACTCAATTATTTTCATAATAATACCTCC 9845 29 100.0 36 ............................. TATTTTTCTCTTAAAGCCAACAACTCATGTGTCATA 9910 29 100.0 36 ............................. ATACTACCATTAGAAACAGAAAAATTAGGAATCAAA 9975 29 100.0 36 ............................. ATAGAACCACTAAAGCCAGTTAATAAAGAAGAATCA 10040 29 100.0 36 ............................. TACTACAAACATAACCTTACTTAGCACAACGTATTA 10105 29 100.0 36 ............................. ATCATAGTACCCATTATTCCAATTCCAATTGGAAGT 10170 29 100.0 36 ............................. TGAATTACTTCCTGGGAAAGTTTCAGTATAAATACC 10235 29 100.0 35 ............................. AAAGCTTAAAGCTTCTAAATTTAATGAAGCATATG 10299 29 100.0 37 ............................. TGTAAGAGGTAACCCCGCCCGCTCGGGCTTAATTTCG 10365 29 100.0 36 ............................. CATAAGGACGAGTTATACAGTAATAAGGTTACTATA 10430 29 100.0 36 ............................. ACGCCCTCATCGGTATATATTAAGCCATCTACATTC 10495 29 100.0 36 ............................. TGTTTTTATTCTTAAAGATGGAGCTATTATTTCAGA 10560 29 100.0 37 ............................. TTTATCATGATAAAGTTGGAGTTGTAGAGAGATTTGT 10626 29 100.0 36 ............................. TAATGTTTTTCCTCCACTTTACTCTTTATAATATTG 10691 29 100.0 37 ............................. ATGTATTGTGATGGTGTTACAAATGCAACTATTTTAA 10757 29 100.0 37 ............................. TTAAAGACATATGATCTAGACAATGAAATGGATGAAG 10823 29 100.0 37 ............................. CTTTCATAGTACTTTCCAACTTTATGCATATAATCCT 10889 29 100.0 36 ............................. GTAGAAGTACCAAATTTAATAAGTATAGAAATATCT 10954 29 96.6 36 ................A............ ATTTTTTGCTCTTACCCTTGCCTTCCCATTTGAGCG 11019 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 11085 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ===================================== ================== 70 29 99.6 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AAACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAACAAAATGAATCAGAAATTGAAGGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAGAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGTAATTATTCAGAGTTAGGATTTACTAGAAACACCAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGTTTTTAGCATTTTAAATTTGGG # Right flank : AAAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAGAGTGTAATAAATCTTTTAGGCGGTTATAACATAGAGAGTCTATCATACTTAATACTTCCAATATACATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTAAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAACCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //