Array 1 10123-11253 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKAM01000031.1 Lentilactobacillus rapi strain NBRC 109618 sequence031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10123 29 96.6 32 .....T....................... GTCGTCAGTTTGTTGGACAATGTTTATTTTTA 10184 29 96.6 32 .....T....................... TACTCGCGCCGAGTTTGACAAACGAACTGCTG 10245 29 100.0 32 ............................. ATATCGTCCGTCCCGCTATCTGCATTCCAATT 10306 29 100.0 32 ............................. AATTGAATCGGTAGTGCCATCAACGGTTGCCA 10367 29 96.6 32 ............................C GACGTCATCGCCTGGGATGTGACTTCTATGTT 10428 29 100.0 32 ............................. TGGTCGCGATTGCTCCACATCCACTGGGATGA 10489 29 100.0 32 ............................. GCTAACCGCATTTTCAGCAATTTCAAACATCT 10550 29 96.6 32 ............................C GGTGGTCTTTGATAGCGAAAAGATGGCAGATG 10611 29 100.0 32 ............................. CTGGGTGACGATGTGGCAAACAAAGCCATTGA 10672 29 100.0 32 ............................. ATCCACCTCTAAACGTCTTAAAGCGAGCTGTG 10733 29 100.0 32 ............................. ACCACATTAAGAAACGGCAAAGCTCCTGAGTG 10794 29 96.6 33 ............................C GTGCCGCACACAGGGATGCTCTGTTTAGCAAGA 10856 29 100.0 32 ............................. GCAAAAAGCTATTTAAGAGAGTATCACGATTG 10917 29 100.0 32 ............................. GATATAATTAGTTTTGTTGGGAACTATTTTTA 10978 29 93.1 32 ............C...............C TTAACTGGCACACCAAAACAAGTAGCATGGGC 11039 29 93.1 32 .............A..............C TTGTCCAAAATTAAAGGCTGCTTATTCGCATC G [11061] 11101 29 89.7 32 A................A..........C TTTTCGCGACGCCAGTTAAGGCATAATTCGTT AT [11114] 11164 29 89.7 32 .............A.......A......C CCATATAGCAAAGGAATTCGGAGGGCATTTGT 11225 29 93.1 0 .............A...A........... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 96.9 32 GTATTCCCCACGTGTGTGGGGGTGATCCT # Left flank : ACGAAGGACAAAATTATCTCGATTGGTGCGATTAAAAGAACTAAGAATGGTGAATACGACCAATTCGATCAATTGATTCAGATTGACTGTGAAGTTCCAAAGAAAATAACAGAATTGACTGATATTTCTTCAGAACTATTAGCAACCGATGGGGTTGACTTAAGCTTGGCTTTGCAAGAACTCAAGAATTTCGTTGGCAGTTCAACAGTCGTCGGATATAATTTGCGGTTTGACCAGGAGTTTCTTTCGGAAGCCTTTCATCAAACTAATCAATCTGATTTAACCAATAAGATGCTGGATATAATGCCGGTGGTAAAAAAATCAAATCAGTTTCTTGATAATTATCGACTGAATACCGTTTTAAAGGCATATCAAATTGATAATTCAACGCCACATCATGCATTGGCGGATGCAAAGGCAACATTAGACCTAGCAATCAAACTCATTGAAAAGGGCCATTTGCAAATTTGAGAATGCCGTCATAGCAGGGATCCTTTAGT # Right flank : TCATGAATGCACATGCGGCCAAGATTATTTACGGTATTCCCCATATATGTGGATATAGTAATGAAAGGAATGCCGATACCCAATAAGGTAGTATAGAGTAACAAATGTCAAAGAAGGATTGAGTTTCAGCCAAGCTCATGAAACAAGTTGAAAGCAATATTCTTAAGGTATAACATAACGTTAACAATTATTTTTTGGAGGCATTTTTATGACGACCATCGGTTTTTGTTCACCGTCGACACCTATTACTGCAATCTCACCGATTCGTTTTAAACGAGCGCAGAAATTTTTGACCAGTAAAGGGATCCAATTGATTGCCGGCAATTTAACGACTAAAAGAGACGCTTATCGGTCTGGTTCAATTCGGCAAAGAGCTGACGAGGTTAACGAATTAATTCGTAACAATTGTGTCGATATCATTATGACTACGATCGGTGGGACCAATACCAATTCAATTTTGCCTTACATAGACTATGATTATCTAAATGACCATCCCAAGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11622-10860 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKAM01000046.1 Lentilactobacillus rapi strain NBRC 109618 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11621 29 100.0 32 ............................. ACTTTTAGTAAGCAGCAAATATTTTCTACTAA 11560 29 100.0 32 ............................. ATCATTGATCATTGATATCGAATCAGGAACAA 11499 29 100.0 32 ............................. TACTACGATGCAGGCTGGTATAGCTGAGAAAG 11438 29 96.6 32 ............................C CATGAGGAGCGACTCAAGAACTTGGAAGTTGA 11377 29 96.6 32 ............................C ACCCATTGCCAGTTGTTGAATCTGTTGACCAG 11316 29 100.0 33 ............................. TTTTCAGCTTGCCGCCGGTTTGCTCGTACTTAG 11254 29 100.0 32 ............................. CTACGGAATAACTGATTAGGTAAGGTGAAGAT 11193 29 100.0 32 ............................. AATAACGGTTTCTCCCAATGCCAAAACGTCGC 11132 29 100.0 32 ............................. ATAGCACAATCTTTCTGCGAGGTGGGCGTGGT 11071 29 100.0 32 ............................. GGTTGACACCTATTTGGATAATTTGACCGACC 11010 29 100.0 32 ............................. GAGTTCCACACGCTGCTGATAAACGAACTTGA 10949 29 96.6 32 ............................C AGTATCCTTATACAATTTGATGATGCGATATT 10888 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.2 32 GTATTCCCCACGTATGTGGGGGTGATCCT # Left flank : ACAAGAAACTTCCAATCATCAGAAGATTATTGTTTGGAGTTGCTACTAAAACCGAAGTGAGTTAACCCGGTCCGTGAGCCGAAACTCGAAATCTATTTTGAAAGAAGGGATGCCCGTGAATCAATAAGCCGATTGGCAACGATACACCCAAATATAATAATTCACCCCTCAAATAATTACTAAGAAACCCCAACGATTTCTTAACTTCATGAATTACCCCTCAATATGAAAAAAATCCCTTAAGTCCCTGCGTGTTAGCGGGGGCTTTTTTGTGCTTTTGTAAAATGATTAGGGATTTGAGATGGGCCTTTGTGAGTGGTCCACCATTTGCCATTTCAACAATCCCTTTTTCGTAGCACCAGCAAATATTTTTTGTTATTCTTAAGGTGGCTAATTGGCTAGGGGTATGGATTGGTGTAGGAAGGAACTTTCTAGTTCAAACTAATGAAAAACAGTTGAATTGGAATTTTCAAATGCCGAGATGACAGGCTTTCTTTAGT # Right flank : CCTTGTGCAGTCAATGAACCGTCAATAATTCGGTATTCCCCACGCATGTGAGAATCCCGTTATTTTGAATGTTCACCGATCCAACAATTTCTTGAATTCATTAACTTAAAATATTCACGTCAAATGTTTCAAAATATCCTATAATAAAATTGTTTCTTGTTCCCAAAATGAAAGATGGTGATTATTATCAAATTTAAACGACTCTTACTAATTGCATTGCTACCAATTTTATTATTAACGATAACCTGTGCGCCGACTCACGCCGCTACTTGGCATCGAGGGACACCAACCGTATTACGTGGCCACTGGAAGACGAAAACTTGGCGACCATATAAGCAGTATAAAATGACTGGGCACGCGTATCTAAAAGTTCATCAAACCTGGTTCACTAATTCACCTGCCTTACCGCCCGTCGATCCGTCCAGTGTTATGAAGGTCTATTACAAGAAGGTCGGTCATGTCTACCATCTTGTCGGGCGCGACTTCAATAACGCCCCAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACGTATGTGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8134-8529 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKAM01000078.1 Lentilactobacillus rapi strain NBRC 109618 sequence078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8134 29 96.6 32 ......................G...... AATCGCGTCCTTCTTCGAAGGTTATCTGGGTT 8195 29 93.1 32 ......................G.....C GGGTACTTTGCTTGCATCCCTTTAGGATGTTC 8256 29 100.0 33 ............................. ATTAGTAGTCTTATAATTAGCGGTTCCCGTATA 8318 29 100.0 32 ............................. ACTATTCATTTATGACACCTCCTAGTAGAAGA 8379 29 96.6 32 ............................C CTCAGTTTTTGTGATACCAGTCACTTCGCCAA 8440 29 93.1 32 ..........T.......A.......... GTTCAACCATTAAGAACTAAAAATGAAATTGA 8501 29 86.2 0 ...........G.A....A.....G.... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 95.1 32 GTATTCCCCACATGTGTGGGGGTGATCCT # Left flank : TATATTGCGTGGGAATGTGTTGAGGCAATATACGCGCATCAAATAAAACCGATAGATTGCGAGGAATTTATATGAACAAAATTTCTATTCGTGGCAGTTTGCAGACGAAACAAATCGTAGGTAGTTATTCAGATGTTGAGAAGAAGATTATTGCGGATCTAGACTCCGTTCAGGAAAAGGACGGCAAAAAACCATTTTCAAAGATTGCCGATGAAGTGGTTGTTGAGCCATACCGGGACGGGGCGTATGCGTACCACGCATTATTAACGGAGGCGGCAAAGATGTACGATTTGTCGCCAGAGATTCAAAAGAGCGCCAATGTTAGTGATGAATAGTTTGATTTGGGTCATGGTGAAGACTTCCTGTTAGCTTGTTGTTGATAGGGAGACGTTGCCATGGCCTGTTTTTGTGTCGTTAAGTTGTAAGGGTGTTGATCATAAAGTGATTGAAAACAGACATTTGCCGAATTGAAAACGCCGGTTTAATAGGGATCGTTTAGG # Right flank : TAAAAAGGTGTATCATCAATTAGAGTAATAACTCCAACTAATTAGAGCCGCCTTTTAGCGCCTGCAAGCGTTCTTTAATGAGGACTTGTAGCTCTGCTAAATCCGCTTCGGTTGCGTAGTTGCGAATAAATCCCCGTGCTTGGGATCGGCGGGAAATATAACGTGTCCGTTCTTTATGGGCCTGATCCCATTTCTTATTGGCACGTTTACGAGCTTCTGTATAAGGCTGTTTAGCCATGGTGCTCACCTCGTTAGTTTGATTGAATTTGAAATTGAGATATGGTATATTAACTAAAGAAAAGAGAGCACTGGGATTGCCCCCCAATGCCCTCAATCGTGAGCTGGATACCGTTTGAATGTGGCTAACCGTAATGGTTAGTCTTTTTTGATTTTATGATAAGCACATGCCAGCAAGTAAATGCCATAGCACAGCCCGATAAAATCAACTATCCACGGGTCCGTCACGGATTCTCCAGGTTTCCATGTCGGCTACCTCCCAT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACATGTGTGGGGGGGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //