Array 1 88470-88720 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMN02000010.1 Leptospira kirschneri serovar Cynopteri str. 3522 CT ctg1134731807563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 88470 37 100.0 35 ..................................... TAATATCGCATTCATTGCGTTTGCAATATCCGATA 88542 37 100.0 34 ..................................... ACTTGAACTTGTTATACAGTATAACAAATAAATG 88613 37 100.0 34 ..................................... CTTTTTCGTTGCCATATCCTAAATCCATTATCGT 88684 36 86.5 0 ...........................T.-.CA...A | G [88709] ========== ====== ====== ====== ===================================== =================================== ================== 4 37 96.6 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTGCGGTCGGTTCGCGTTTAAACGTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAAAGCTTTTTCTAATCCATAAATTTGCACCTTTTCGGCCGCT # Right flank : AAACGATTTATTTAAAAAAAAATTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTGAATAAACCATTGTTAAACTTTACAACAAAGTGTGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTGCTGTGATGTAGGTTTATTTCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTGAGTACCGTTAATTTTATCGCAAAACACTGATTGCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAAC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 233716-233885 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMN02000005.1 Leptospira kirschneri serovar Cynopteri str. 3522 CT ctg1134731807579, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =============================================== ================== 233716 26 100.0 47 .......................... CCTTCCAAAATGCAGTTATGGAAGAATTCGAAAATGGTTTCAATCCA 233789 26 100.0 45 .......................... TGGTGACAAAGTATTTTCCGGATGAGCAAGATAGGTTTCAATCCA 233860 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =============================================== ================== 3 26 100.0 46 CTCTCCTTTTAAAGAAGAGAAAGAAC # Left flank : TTTTGGCTCCAGTCAATAAATTTCATAAAAGAAACCTAATACAATATCTCGTCTTTTATTTGAGAGAACGTTCTGCTAAAGTTCCCTCGTATCGATTTCGCGTCCAGAGGATAGAAGCTACTAAACCTTTCCTATTTCTGGTCTCAAAAATGTGGGAACTCATACAAATCGTGGATTTACCAGTAGTTCCACACTTGAATACGATAAGTTATAAACTTCTATTTTTTAAATTGTGGTAGTTCCTACAGATTACGTCTCTTTTTATCTTTTTTGCGATTTTAAATCATACTTTTCCGAACGAAATTTTGCAGTAGTTCCTACATTTAAAGAATCGATCTACAAAGTCCAGATCCCAACTTTTTCAAAATTATAGTTGTTGAAAAAAATTCCATAGTGGCGTTTAACAAAACTATTTCAATTGCTCGTTTCCATGAAATAGAAACAGATCAAGAATTCATTTTTCAACAACTTTATTCTAGATTGGCTTCAATTTGTCCTTT # Right flank : CAGCGGCTTGATAGGTAGAAAAATTATATATTATAAAAGCTTTATTGGCTTTTATAGACATAATAATTGCGAACCTACTTTTGCCATGCTGAACAAATACTAAGCGAAACCGTTCAATCGCCAAACAGAGAATCAATACAAGGGTGCGAAAGGTTCGTGATTGATCGGGAGAAACAGGTTCGCAGAAGCGTTTTCATTATAAATGATCGGCTTTTAAAAATCTATAATATAGTTAAAGAAAGAATAGAATTAGAAATTTATAACTATCTAAAGAGACGTAATTATGAAAACCACTGTGTTTCGTATTTTGAATTATAGAGTTGTTGGAAAATTAATTCTTGATCTGATTGGAATGGACAATTGAAGCAATTTTACGAATCGCCACTATGGAATTTTTCAACAACTCTATTAAATATCTAAAATATAGAAAAGTTTTACTTACTTTTCTTCAGAATGGTAAAATTGACCCTTCTATTTTTTTTACGTGCTTCTTCGGAATC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCTTTTAAAGAAGAGAAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 14192-13791 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMN02000020.1 Leptospira kirschneri serovar Cynopteri str. 3522 CT ctg1134731807581, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 14191 36 100.0 35 .................................... ACAACAATTTTGCTAACGAAAACTGTTAATAATAA 14120 36 100.0 37 .................................... CCTCAGTTCGTCTTTGATTCTATCAAATATCTCTAAC 14047 36 100.0 38 .................................... ATTGAACTCACAGCCTCATCTATAGTGGTTTGTAATTT 13973 36 100.0 38 .................................... ATTGAACTCACAGCCTCATCTATAGTGGTTTGTAATTT 13899 36 100.0 37 .................................... GGGCCGATCAGCCATGGAAGTTTGTTCAAAGGGTATT 13826 36 91.7 0 ......................T.....C.A..... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 98.6 37 CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : AATTGGCTAAAGTTATCGAAAAAGAAGACGACGTATTTTACCTGACTCTTTGCGCTAAATGTGCCTCCGGAGCTCACACCCAAGAGAAAAAATCGGCCTGGCCAGAGGCTCCCAAAACACTCAAAATTCTATAATTCAAGTATCTATTTATGGCATAGACATAATTCCCTTTTTTTAGCATCAAAATTAGCGTCTTAGTCCAAACATAACTTCGTATTCGTCCATCTTTATAGAGATTCAGAAATAACCGCATTCTAATAGCAGTTAGTTGAAGTTATTTTCTTTCTTGCGAAAATTCTGGTCCAATTTATTATCAAATACGGATCAGAACATACTTGAATTGCTATTTCCTAATCGTAAAGGCGGATTGACTCAAAATATAATTTATTAAAGAAATTCGAAATGAAAAAAAGTTATAAAAAGCAATATTCTTGTTCACCCTCTATAATTTCCTTTGTATCGACAATCTCTACACCTAAAAGCTATAAGATTAAAATGCT # Right flank : AAAAGGACAGAAAAATCGGCCGATGCGAAAGCGATCTCCTGCAATGCAACATGATTTCACTATAAATATTCGAATATACTGAATTTATAACATGTTGCGTTGCAGATTGAAACGGAGAGCGCGGTTTTTCTTCGCGGAGGCGAAGAAAAATTCGCCCCGCCTTTTATTTTCCGAATGACCGAAAGCTGAATAGAATTATACCGCAATTCGAATATTATAAAAATAGGAACTTCTTCTTGGAAAATCCTTCGTTTTATTTTTTGATCGAGAATGTTTTTCGACCTTGAATCAAATCGTATTTTTTAACGTTTCATGGTCGCAACCCAATGTGCAATGTTTTTGAATTCAGGATTTTCCTCGAGGGAGGAAAAATATTCTCTCGTCCATAAGAAATGAGCGCTTAAATACTCTTCCTCCTGGAGTTCCCGCAAATGTTGTAGTGCCAGTTCCGGTTGTTTGTTAATCGCAAAATATCCGGCAAGCACGAGTCTTAAACGGTT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 74456-74230 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMN02000020.1 Leptospira kirschneri serovar Cynopteri str. 3522 CT ctg1134731807581, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 74455 24 95.8 49 ...................T.... AGTGGATTGAAACGGGTTGGCTTTCAAACGATGAGAAAAAATCAATCAG 74382 24 100.0 47 ........................ AGTGGATTGAAACTTTGTAATTAGTGTTTAATTTTGATTCTTTATTT 74311 24 100.0 33 ........................ CTATTTTATGTGGGATCGATTCCTAAGACATGC 74254 24 79.2 0 ........T...A.....C..A.T | T [74233] ========== ====== ====== ====== ======================== ================================================= ================== 4 24 93.8 43 GTTTCTTCCTTTGTTTAAGAAGGA # Left flank : CCATGGTTCTTATTCAGAACCATACAATCAATTTCCCAGTATTTTAGGGTTTTGCAGTAAAACTTACGGCTCTCCATTTTTTAGAACTAAAGCAGAATGCTCTTTATTGGATTGGGTTCTTTTATGTAGTCATAAAGTAAGAGAAAAATTCCATACTCTATAAAATGAGTTATTGAGACCGAATTTTTACTAAACGTTTAAATCAATCTTCTGAAAATTCATTCCTAGATATCCATCTACTTAGACTTAAAACTAAAGAATTTATAGTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATGAAGCGCTTTTTGCGAACCTGTTTCTCCCGATCAATTGCGGCCCATTCGCACTCAAACGAATAACCACCGTTTAGCGATTGAACAGTTTTGCTTAACGTTTATACAGTATGGCGTCAGTAGGTTCGCGATAATTATGTCTAGAGAAACTAATAAATCTTTTCCTAATACATCAATTAGAGACTGTGCAGCCGCT # Right flank : TCGATTTAGAACTTTCTGAATTTATCTATAAAAATCACAGATTGTATAAATTCCGATATTCAGCTTTTTATGATAAATTTCAGGTTTATAAAATGAATTGATTCAACCCAAGTTCTTTAAAACTACAGCAAATCTTTATTTAAGGAAAGGATACAAAAGACCGAAAACGGCAAAATCTCTAGACTTTCTTCTTCTTGGAAAACAATTGTTAATTAATATTTTAGAGAATTATAATATACTTGATTAGAATTTCTAGAAATTTTTATTTTACCGCTCTATACTCAAAACGTACCACAACTCAATTTTCTCCAGTTAACTTACAGGTGTCTCAAAACCAAATCGCACTTTATCAGAAAGATCAATCTGAATAACGAAAGTGCCTCACTTCTATTGACGCTCGACAGATTCTTATTATATTAAATCACGTTATCGCAAGGTTTTATTCTTTACCTTGAAAGAAAATAATTTAAAATAAACGAACATGAAATTTTTTATCAGCT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 9362-9181 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMN02000004.1 Leptospira kirschneri serovar Cynopteri str. 3522 CT ctg1134731807573, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 9361 37 100.0 35 ..................................... ATATTGAGGAAAAATTAATGCGCCGCGGGACCATT 9289 37 100.0 35 ..................................... TCGTGGGAAATTTGATCTTGTTTTCGTAATTCCAA 9217 37 97.3 0 .................T................... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 99.1 36 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TTTCAAGATGAAGGATAAAAACAATCTTTTACAAATTACGTGAGTTCGGCTGAGTAAATATTTTCATAAAAGTATGAGTTCCTACAATTTTAGGAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACAGGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTCGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGCTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : TAAATGCGTCAGCGCTGACGCATTTAGTTGGTCTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGATAGGCCTTTGTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTAAGTTTCAAATGAAAGTATGAAATTTTCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTGCAAATTTTAGCTACGCACATTCCACATAACGACCTTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTATTTTTCCTCCATCGGATT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //