Array 1 3073467-3071502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044961.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014881 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3073466 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3073405 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3073344 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3073283 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3073222 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3073161 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3073100 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3073038 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3072977 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3072916 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3072855 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3072794 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3072733 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3072672 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3072611 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3072550 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3072489 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3072428 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3072367 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3072306 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3072245 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3072183 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3072080 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3072019 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3071958 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3071897 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3071836 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3071775 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3071714 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3071653 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3071592 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3071531 29 96.6 0 A............................ | A [3071504] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3091091-3089598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044961.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014881 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3091090 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3091029 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3090968 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3090907 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3090846 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3090785 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3090724 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3090663 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3090602 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3090541 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3090480 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3090419 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3090358 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3090297 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3090236 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3090175 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3090113 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3090052 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3089991 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3089930 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3089869 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3089808 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3089747 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3089686 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3089625 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //