Array 1 1355-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZN01000009.1 Salmonella enterica subsp. enterica serovar Ealing strain 89-0403 NODE_9_length_191471_cov_1.84573, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1354 29 100.0 32 ............................. CGCACGTTGAGAGCGGAATGCCGATTCCTCCG 1293 29 100.0 32 ............................. CAAATGCATAGCAAATGCATAGCATAAACATA 1232 29 100.0 32 ............................. GTCCTGGCATTCGGTATCCCCGGCGAATTTTA 1171 29 100.0 32 ............................. GAAATCGCCACGGTGATTCCGTCTAACAGCCG 1110 29 100.0 32 ............................. CGAGTACTATCCAAGTCCTGTATGGACCGCAA 1049 29 100.0 32 ............................. GGATCAAGAATGCTGATATTGTTGATGCTCTA 988 29 100.0 32 ............................. CTGAAGGTTTACGGGCCGGAATTACCGCGACC 927 29 100.0 32 ............................. CGAATCCGACCTCTAAAATTATGCGTAGACCA 866 29 100.0 33 ............................. GAGGCCCAATACTACACGCAATTAAGGCTACGC 804 29 100.0 32 ............................. TGGCTGAACAAACGCACCGGCGAATACGAGTC 743 29 96.6 32 ..................A.......... CCGTACCATTGCCCAGCTCCTGCAGGATGGTG 682 29 100.0 32 ............................. GTTTATGCCAGCGGCAGTACAGGGACGATCAC 621 29 100.0 32 ............................. TCGAACTGGTAACGCAGCCCTGTACGATGTGC 560 29 100.0 32 ............................. CATATTATCCAGGCTGAATCCACTTAAATTTG 499 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 438 29 100.0 32 ............................. AGCAGGGGGTTATTCAATACAGCCCTTGACGT 377 29 100.0 32 ............................. GAGTGTTAGGGAACCTGGTTGATGTGTCAAAC 316 29 100.0 33 ............................. CCGATCAGCCTGATGACCGATTTAATTAAACCC 254 29 100.0 32 ............................. CTCGTCGTCTTTTTTTTCGCTCATTTTTTCGG 193 29 100.0 32 ............................. TTCCCATTGTTTTTTTTGCCCATGTTAGCGCA 132 29 100.0 32 ............................. ATCAGGTTTTGGGGCTGGCTCCGTAGGTGTTT 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GGGACTACCCGCAGATAAGTTCAGCGAACGTGCGTGTTCCCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-383 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZN01000014.1 Salmonella enterica subsp. enterica serovar Ealing strain 89-0403 NODE_14_length_126698_cov_1.7832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. CCTCCCGGGAGACGGTCAGTCGGGCGCTGTTA 112 29 100.0 32 ............................. GCGGCGAATATCATGATCGTTGTCCCGATCAG 173 29 100.0 32 ............................. GTTGGCTGTAGTGTTGCAACGCTTGAGGAAGC 234 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 295 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 356 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGGGACTACCCGCAGATAAGTTCAGCGAACGTGCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATACCAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17055-21296 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZN01000014.1 Salmonella enterica subsp. enterica serovar Ealing strain 89-0403 NODE_14_length_126698_cov_1.7832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17055 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGATATGATGGTC 17116 29 100.0 32 ............................. CTCTATCCGAACACTGCGGACGTGCAGCAGGC 17177 29 100.0 32 ............................. CGGGCAGGTCGACAGCAAAAACTACCGGGCAA 17238 29 100.0 32 ............................. CGAATTTTGCGCGTGATGGGAGCCCATGAGGT 17299 29 100.0 32 ............................. AAAATGATCGGCTTAACGCTGTGATTCTTTAC 17360 29 100.0 32 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGA 17421 29 100.0 32 ............................. GTTGGTTCAGTTAATTATTAGTGAGCTGCGGG 17482 29 100.0 32 ............................. TCGGAACCTACGCCTTAGTTACAGGCATTAAT 17543 29 100.0 32 ............................. CATCTCGAAAAACTTGGTTGTTTTGAAAAACC 17604 29 100.0 32 ............................. CGCTGAGGAACAGGCCGCACGCAATCTTAATG 17665 29 100.0 32 ............................. AAATCCGCATTTTAATTGATATTATCGGGGAC 17726 29 100.0 32 ............................. TTTGCACTGAACATGCTGAAGGTTATTCGTAA 17787 29 100.0 32 ............................. CGCGAACAAATGCCCTTACCTGCTTAGTCTTG 17848 29 100.0 32 ............................. CGCGCCCGGTCGATTCTCTGGCCTGTTGCGCC 17909 29 100.0 32 ............................. CACGTCTACTGCGTCAGTTGTACCGGCTACAT 17970 29 100.0 32 ............................. AACATTCTCACTCCTTTCTTAATTGAATATGA 18031 29 100.0 32 ............................. GACCGGCAAAATAACGACCTGGACGCCGCCGA 18092 29 100.0 32 ............................. GAACTCAGCCTGAAAGCGCCCGTATACCGGAC 18153 29 100.0 32 ............................. CGCTTATTAGCAGTTCAGGCCGCTCTAGAGGT 18214 29 100.0 32 ............................. TTTTTTTCGACGTCCCGGAGAGTTATTTGCGG 18275 29 100.0 32 ............................. CGACGCTGGAGACCTCATATCAGTCAATAAAT 18336 29 100.0 32 ............................. CATCCAAAAACCCCTGGGACGGGCAAACGGGA 18397 29 100.0 32 ............................. ACTATAGCGCGCTCTCTGCCCTCGATCCTGTA 18458 29 100.0 32 ............................. GATTATATTCAATTTCATGCGGTGATGATTGT 18519 29 100.0 32 ............................. GATTTCGGAAAGAGCAACCCGCTGGCAGATGA 18580 29 100.0 32 ............................. CCCATTATTGTGCTGCCGCCATCAGGTTCTGC 18641 29 100.0 32 ............................. ATTTTTACATAACGCCCTGATGCCATGTTCTG 18702 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 18763 29 100.0 32 ............................. GCCGTATCTAAATAATATGTGCTAATTGGTGC 18824 29 100.0 32 ............................. CGGAGTGAGAGCGCTAACCTTTCTGACTGCCC 18885 29 100.0 32 ............................. ATTTGGCGTGAGAGTGTTACGCCCGAACTGGT 18946 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCGATG 19007 29 100.0 32 ............................. AATAGCGAAACCGTGCCAGCTTTAAACTACAG 19068 29 100.0 32 ............................. AGCGGGAGACCTTGATTGTCCAGACGTTGGGG 19129 29 100.0 32 ............................. CCTGCGCATTCTTTTACAGTCAGCCAGATATC 19190 29 100.0 32 ............................. CAACCATCACAGGGTTAACTGCGGGCGTTGGT 19251 29 100.0 32 ............................. AACGTCTTTATGCGGTTTTGTGTCGCCGGAAA 19312 29 100.0 33 ............................. CGTTCGCGTGCTTGAGGCGCTCACCCAATGCGC 19374 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACGCTGACACCA 19435 29 100.0 32 ............................. TACCATCCTCATATCGTTTTTGAGTTATATCG 19496 29 100.0 32 ............................. AAGAAAATCTTTAACTATGTGCTGATGAACAG 19557 29 100.0 32 ............................. GCACCGGGCAACGCGCGCCATGGTCCCGCACA 19618 29 100.0 32 ............................. ACAGAGACGCGCCCACCGTTCAGCCCTGGAAA 19679 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 19740 29 100.0 32 ............................. AATGGAGCCGTGCCGGACGAGTTGTGGATGGC 19801 29 100.0 32 ............................. ATATGCTGAGAATTCTTTTGGCTTCAAATAAA 19862 29 100.0 32 ............................. GGGCGATAACAGAATGGAATTAACAAAAGAGC 19923 29 100.0 32 ............................. GTTTTTCTCTTGAGCCAGGATTCGCTTGCTTG 19984 29 100.0 32 ............................. TGTCCGATCTTTATGATGAAGAAAAGACGCTA 20045 29 100.0 32 ............................. CCAACATACTCCTTCGGCGGCGTGTCGATACC 20106 29 96.6 32 .....T....................... TCGGCCCTCAGGATATTGAAGGCCGGACACAT 20167 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAGATC 20228 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 20289 29 100.0 32 ............................. TCCACCGGGAAAATAGTCCAAATGGCTAACGC 20350 29 100.0 32 ............................. GAAAGAGAACTTTGCGAATCAGGTCAATGCCC 20411 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 20472 29 100.0 32 ............................. CCAGTGCTGTTATCTTCTACCTCTCCCACCCA 20533 29 100.0 32 ............................. CCTGTCAGCGGCTGGGCGGCAACCTGTGGGAG 20594 29 100.0 33 ............................. CCACCAGCCCACGCCTGACGAGATCGTGCAACC 20656 29 100.0 32 ............................. GAGTGATATCACAATTTAATTTTTATTTTGTA 20717 29 100.0 32 ............................. TGGTTTACGAAGGGCGGCAAGGGCGTCGAACC 20778 29 100.0 32 ............................. GCGGTAAAAATCACGGTCGGCATACATCGTGG 20839 29 100.0 32 ............................. TTCAGCCACAGGCTTGGTTCGTGGCGGCGTTC 20900 29 100.0 32 ............................. TCCCACGCGTCGTCGTCAAACTGCGATTTCGG 20961 29 100.0 32 ............................. AAAAAGCTGAACGCGAAAGCAAAAAGTAACTC 21022 29 100.0 32 ............................. AACTAGCGCCTGCTCCGGACGGCTTGCCCTCT 21083 29 100.0 32 ............................. GTTCCAGGTAGATACCGATCCCCTGGCGAATC 21144 29 100.0 32 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACG 21205 29 100.0 33 ............................. GTTCGCTTCATACGCCTCCGCATCGAAATTTGC 21267 29 100.0 0 ............................. | A [21294] ========== ====== ====== ====== ============================= ================================= ================== 70 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //