Array 1 9956-10613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBA01000010.1 Limosilactobacillus ingluviei strain DSM 14792 Scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================== ================== 9956 34 100.0 35 .................................. GACTAAGGGGGTGAGTATATGGACGATCTAGTAGC 10025 34 100.0 35 .................................. ATGGCAAAGAGTGTCAACCAAAGTCCTTTGTCGGT 10094 34 100.0 37 .................................. GTACGGGGCATGTGTACGCTCCGTGTCCACTTAAACC 10165 34 100.0 34 .................................. AGAACGCCGTCCGCGTTGCCCTGTCGGCAAATCA 10233 34 100.0 34 .................................. ACTGAATCGAATGATGTGAAATTAAACCTTTCAG 10301 34 100.0 34 .................................. ATCTTGACACCAAATCTGTGGTGCTAGAAAAAGT 10369 34 97.1 36 ..............C................... GCTAGGCGGACGCGCACCTAGGCGGCGAAGTTAAAG 10439 34 97.1 36 ..............C................... AGATCGATATCGATCAACGATTTACACCGATCACAA 10509 34 97.1 37 ..............C................... CGCTAAGCTGATTTGGACAAATTCTTTGCGACCAGCG 10580 34 85.3 0 ..............C.....A....AC..A.... | ========== ====== ====== ====== ================================== ===================================== ================== 10 34 97.7 35 ATCGCACTCTGTAATGGAGTGCGTGGATTGAAAT # Left flank : CGTGGTGATTTAGATATGTATCCGCCGTTTTTATGGAAGTAGGGGGGATCAATGATGATGGTGGTAGTAGCCTACGATGTAAAAACCAGTGATCCCCAGGGGGCACGCCGTTTACGACGGGTGGCTAAACAATGCTTAAATTATGGGCAACGCGCGCAAAATTCCGTCTTTGAGTGTTTAATTGATGAAACAAATTTCCAAAAACTTAAATTAGAACTGTTGGCAATTATTGATGAGAAGCAGGACAGCTTGCGCTTTTATCGACTTGGTAACCATTATCAAGGTAAAATTGAGGTATACGGAGCAAAGCAAACTCTGGCTCTAGATGAGCCGTTGATTATTTGAGACTTGGTGCGAACCCTTAGTGCACATGTTTTCCCTAGGGGGTTCGCACCGATAAACAGCGCAGAAATGTCTTTTTTCAAGACATTCGTTCTGCGCTTTATGTATTTTTTAGTCGCAAGATGTGGATTTTGGGGTCCAAAACACCATATCTTGCG # Right flank : TGCCCCTTACGTTAACGCTCAAGCAACTTACCGAAGGGCTCCCCGCAACAAAAAAGCACCCCCATAATTAGGGGTGCCAAGCATCAATTACTTAGTCTATTTAGCAGTTCGCGTTCGGGTGACCATGACAATCAACAGGTTGATTAAGAGGGTTGCGCCAGTCAGCCAAAAGACGGCCGGGTAAGAAAAGAGGCCGGAAACTAAGGACCCCATCAACGAGCCCAAGACAGAGCCAGCGGCTTGAAAGGATTGGTTATAAGAGAAGATACGGCCAAAGGCTTCGTGGGGAACGTCCAAAGTGAGGATCGTTTGAGCCGCTGGCATTAAGCCCGCGCTAGCCAACCCCAGGATAAAGCGCCACCCGGCTAGCCAAGCGGGCGAATGGGTGAGGGCCATCGGAATAAAGAGCAGGGTCGCAATGGCCAGGCCAAGTTGCAAGATCCGCTCGGGGCCGACGTGATCCATCAAGTGGCCGACTTTAGAGGCGGACAGGAGATTGC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTGTAATGGAGTGCGTGGATTGAAAT # Alternate repeat : ATCGCACTCTGTAACGGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: F [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6411-5272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBA01000004.1 Limosilactobacillus ingluviei strain DSM 14792 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ====================================== ================== 6410 34 100.0 33 .................................. AGTTCCCACGCTCCAATCAATTGGTGCGTGGTA 6343 34 100.0 35 .................................. ATGACTGAAGAACAGTTTGAAGCTGTTTGCGATAA 6274 34 100.0 35 .................................. GGGCAACGGCTTGGGCTGTGGTTGACCAAGTTTAT 6205 34 100.0 35 .................................. ATCAGCTACACCGCCGATGCGAATAAAACTAGGGT 6136 34 100.0 37 .................................. ACACGCATGTTGATGTGTATGATGACGATAGCTTGAT 6065 34 100.0 35 .................................. CGCCGGGAGTATGTATTTGAGGACATCGAAGCCTA 5996 34 100.0 34 .................................. TCCAATGGTTCCTCAATTGTCCGCGAATCTTGGC 5928 34 100.0 38 .................................. TGGCTCAACAAATGCACGTTGCACCGTCGACGATGAGC 5856 34 100.0 34 .................................. ATTGAATCAACTATGAAGATGCAAAGACAGATGG 5788 34 100.0 36 .................................. ATTGGCAGGCCGTCGCTAAACAGTAATCAAATCATT 5718 34 100.0 35 .................................. AAGAAGTCATTGATGGATCGGTTGGCTTGTTGCAT 5649 34 100.0 35 .................................. GAAAACGTCGAAGGTATGTTATCGGCGGCCCCGGA 5580 34 97.1 36 ...............A.................. ACCTTGCCCTCGCGTCAACGGGGGCAACCACCCACG 5510 34 100.0 34 .................................. GTTGATAAATCCGGCAAGATGAAGTCGATACCTA 5442 34 100.0 34 .................................. AACAACCAAATCGGCCAAGCTAAACAAAGAATCA 5374 34 100.0 35 .................................. TTGTGTACATCAATTCTCGCGGCTCGTAACCGCGT 5305 34 85.3 0 ..............C..G.C..A.......G... | ========== ====== ====== ====== ================================== ====================================== ================== 17 34 99.0 35 GTCGCACTCTGTAATGGAGTGCGTGGATTGAAAT # Left flank : GGGAAATATGATTTACCGGGTCTCCGGGAAAACCAATTTGGCGGACTTCGAGCGTTACTTTGATGTTGATATTCCGCAATTTGAAGATTTGGATGTGGCAACTTTAAACGGTTTCTTCCTAGAAGAAGAATATAGTTTGAAGTTAAATCATCCCTTACGGGTTGGAAACTTCTCATTTATCCCGGTTGAAATGGAAAACTCGAATGTCAAGGAGTTCCGGGTTACGCAAATTAAACCAAAGAAAAAGGTTAAGGACGAAGAAGCTGTTGATCAAACTGAGAAAAAATAATAGTGTGATCGAAGTGAGGGAAGGTAGGCATAGTACCACCTTCCTTTTTTAGTAAAGACATTGGTGCGAACCTAAAGTAAACATACTTTTCTCGGTAGGTTCGCACCAACAAAAGCTATAAATCGTCTTACAATAAGTCATTGAACTTGAATCGCGCAAAAATTTTTAGCCGCAACTAGTAATATAGCAGAATAAACCACTATATGTTGCG # Right flank : GGTAAGCTTGCCGACGTTTTGGTGAAATATTGCCAGCCGGATGTTATAAAACTTTTAGCTTGGAATAATATGATAACGTTCAGAAAAGTAATACTAAAAGCCGCTAGAAATCAACGTTTAAAGCGTGATTCTAGCGGCTTTGTTTTTCAACTCCTTAGTCACTAAGAAGCCCTTGCGCTTTTAGGGTAAGTCGTTGGCGTTGGTAGTAATTTAACGCGGCCGGATCTAACCGCAAATAATCTGCTAAGGCTTGTGGTGATAGTTCCGGGTGTTGCGCCAAGGTATAGAAGACAAAACTTTGGTAAAGAAAACGAGGAGCTAAGCGTATGCCAAGGTATTCTTCGGCCGGTTTTAAAAATTTATGCAACCCCGCGTTGCTAAGGTGGGGTTGAGCTTGATTAACCCGCAGTTTTAGAAAGGGATCAGGGCAGGCTTGGAGTTGAGCTAGTGGAGTGTGAAAATTCCTAAACTGATCCAGAAAGCATTGTTCAGCGTTTGAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTAATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: R [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5838-6077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBA01000048.1 Limosilactobacillus ingluviei strain DSM 14792 Scaffold48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 5838 32 96.9 37 ............G................... AACATACCAATAATCCTGTGCCCAGCTATCTTGAGTC 5907 32 100.0 38 ................................ TGTTGCGTCATATGGCGTTAATGGTCTAGCTGGAGGTC 5977 32 93.8 37 ........A..C.................... ATTCCGGTGTTGCCAATTAAAATTGATGGACAGGGTC 6046 32 71.9 0 ........AC...T..G..T........CGGC | ========== ====== ====== ====== ================================ ====================================== ================== 4 32 90.7 38 GCATCCGGGTCTTCGGATGCGTGGATTGAAAT # Left flank : TTTGAAGGCCTTGATCAATGAAGTGCTGGCAGCTCGACTTGCCGGCGATGAGGTTAGCCAGCAAATTATCGTGTACGACTGTTCAGCTGGTAAAGTTCGACCGTGCTTACAAGTGTTTCAAGAGGGGGTAGTGGATAGCTTTGACGATGTAACGAACGCTGTGAACCAGCGCTATTACCAACTGTATGATCAGTTGGATGATTCTGAGTGGGACTAGTGGCTGGTGCTGGTTGAGAGGTTGGGAAGATCAATTGAGGACATTGCTTGATTAATTTCAAATTGGACAGTACAGTAACGGTGAAGCAGTTTTACTATGATCCTTGGAACTGAATTGTTGGCGTAGGAAAGCGTGCGAACCGGAATTGCCCATACAAGTTAAGGGGGGGTCGTACCAATTAATTCAAGTAAATGTCTTGTTTAGAGACGCTTTAGTAAATTTGAAACACTTAGTTTTAGCCGTAAATCTTTGGGGGTGGCTTTACCAGGCCATTGTTTGCGTC # Right flank : CACTTGTTGGTTGACAACTTGAGACTGAGGAGCGCCGGGCTTGACCAAGCTGGTGCGGAACTGTAAGCTAATGAATGATGTTACCAGTAGGCAACATGAAGTGGCAACGGAACACGCCACGTTCCCAAGTAAGAGGGTAATCCCTACGTCAGCCGGGATGGGGCGGTAGCCATCCTTGTGTTCCTTGATTTTTAAAAGTGCGGATGGAGGCTTCAGCGAAGAACCTCTATCCGCACTTTGTCATAAATGGTATTTTGCTAGCCCCGTTTACGGCTAAATTGTCGAAGGCATGACCATTCTCATGACTAATTAGATTTGGTAAGATAGTGGTGAGATTGAGATTGTTACTGATGAAACTTTTGAAGTGGATGATAATTCCGTCAGAATCAATCCAGATAGTGATTTAAGAACTGCGGCTAAAGAAATAATGGCTTACTTAATAATGGGTTGGAATAAGGTTATCTCAGTTGATCTTTAATACAATTAGGATCTTTTGTGAG # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCCGGGTCTTCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2408-3044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBA01000056.1 Limosilactobacillus ingluviei strain DSM 14792 Scaffold56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2408 28 96.4 33 ............T............... TTCGTCGCTATACTTGCTCACATCATGTAAAAG 2469 28 100.0 33 ............................ TTGAGCTACCCTTTACTTAAGGTCGACCATAAA 2530 28 96.4 33 ............T............... CATTGTACGATTCGCTATAAATCAATGCTTTTA 2591 28 92.9 33 .A.C........................ CGAAATCACAAAAATTTATACTGATGACGTAAG 2652 26 92.9 33 .............-.-............ TTACAAAAAAAGCGTTAGCGGTCGCACCCACTA AT [2663] 2713 28 100.0 33 ............................ TTACTAATTAGTATTTACATTTTGCCCGAATAG 2774 28 100.0 33 ............................ TCGATCAGCAATGGCGCCAATCTGCTGGCCAAG 2835 28 100.0 33 ............................ TCGCATTTTTTGCTTTCTTGAGCGATCCCCATG 2896 28 100.0 33 ............................ TAAGAGAATGCTTCTGGAAAAAGAAAGACGAAG 2957 27 82.1 33 .A.-........T.CC............ CAAGACGCCGAAGGTCACTGGTAAGGGTCAACA 3017 26 89.3 0 .............-.-.......A.... | AT [3028] ========== ====== ====== ====== ============================ ================================= ================== 11 28 95.5 33 CTCTTTCCCCCGCATAGGGGGCTGAACC # Left flank : TCTTTCGTTTGGTCCGTGACTGCTACTTTTGCCACGGTGCTTGGCGTGACGGCATAGCCCGCTACTTGCGGTGGGTTAAAGGCCGCCCATTCCCCGGTTGTCCATGGTGTATAACCAACCGGGAGGAACCCCTTACATTTTCTAATTTTGCTCAGTTGATTTTGGGAGGTCAACCAAGTACACTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTAGTCTCTTTCCCCCGTATAGGGGGCTGAACCCTTAATCGACTTGAAATTTTTTGACTGTTTCGG # Right flank : CCAACGGTACTACCGTTGTTCTATTAGCTAAGTTAGCTTCTTATTCCCTATCTGATGATATCGTCGATTCATTGATCGCCTTTCTTAAATACAATCATTTTGAAACCAATAATTTGAAAATTTCACCCAGTTTAGTATAGGAGGTGACAACATGGACACAACTCAAAAATTATTAACAGACTACTACCGCTTTCTAAGTAGTAACTATCAAATTCACCAGCTCGCTGATACCGACGAAATCGTCACCCCTCTCACCGATTTCATCGGCGACAACATCACCATTTATCTTTCCAGGCTAGGTGCCCAACAAATCCAATTGGATGATGATGGCTACACTCTCGACAACTTATCCCTGATGGGAATCGCCTTGTCCGATACACGTAAACAGATCGTAAAACAGATTTGCAATCAATATCAGGTTGCTCTCTCTGATGATGGTGTTTTATATGTAAAAGGTAGCCTATCCAATTTCCCACTGATGAAGCTAAACTTAACCTCTG # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTTCCCCCGCATAGGGGGCTGAACC # Alternate repeat : CTCTTTCCCCCGTATAGGGGGCTGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.30,-10.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //