Array 1 131428-130910 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000020.1 Streptomyces sp. 3MP-14 NODE_20_length_143678_cov_49.689539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 131427 29 96.6 32 ............................T GGCGCCGATCAGGCCGGCGTTGATGCCGATCG 131366 29 100.0 32 ............................. CGGCGGTCGGAGCGGCGCCGTTCGTCGGCGGC 131305 29 100.0 32 ............................. CCGAACGGCCAGTACGGATTCATCCCCGAGCT 131244 29 100.0 32 ............................. CGGATTCCTCGGTCCCCCCACGTTTGGAACGG 131183 29 100.0 32 ............................. CAGGCCACCAACACCCTCGCTTGGCTGATCCC 131122 29 96.6 33 ....C........................ TCTCCAGTGCCGCCGCGCTCGTACAGCTGCCAC 131060 29 100.0 32 ............................. AACGCCTCGCCACCGTCCTCTTGGACGACGTG 130999 29 93.1 33 ..............G.........T.... GGCACCCGGACCGCGTCCCAGTAGACCCCGGCC 130937 28 82.8 0 ....................-..ACC..G | ========== ====== ====== ====== ============================= ================================= ================== 9 29 96.6 32 CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : GCGCGGCGCGCGGGGTCGCCGGACGGCGCGCGGCGCGGCCGCGCGCCGGGGTTTACGCCCGGCGGGCGGGGATACTCGCGCGCCATGAGTGATCAGCTGCCCTCACAGGCCGAGGGGGAGCGGGACCCGGATCTGCCCGACGGTGCGAACCCGGACGACGAGCTGGAACGCAGCGGCCACGAGCATCCCCGGCAGACGCCCTCGCAGGCCGAGGGCGAACGGATGGACGACCGCGACGACGAATAGCCCCGGGCGAACGCGTTTCGCCCGGGGCAGCGGGCGGGGGCGCGCGCCGCGCGCCGGCCCGGCGGGCTGTCGCGCACGACGGCCTGCGCCCGGCCACGGCTACGCTGAGGCTTCTCGGGCGGCGCGGCGCCGCCTGGTAAGGGGGAGACATCGGTGAGCCGTCACGAAGCAGCGACCACTCGGCCTTGTCGGGCCCCAAAGGTAAAGTTGAGTAAAATCCGCCCCCACCCCCGATAAACCTGCAGCTCACGAAC # Right flank : TCCCCCCGGCCCCTCGCCAGGCCGGCGGGGCCGCCGCCCCCGCCCGGGGCCCCCTGGGCCCCGGGCTCCCGGGGCGCCCCGCCAGGGGGCACCCCGGGCTCCGGTCAGCCGACCAGCTCTGCCAGGACATCCTCCATCGTCACGAACCCGAGCAGCGTGCCGCGTTCGTTGACCACCGACGCCAGGTGGGTCTCCGCCGCGCGCATCGCCGTCAGGACGTCGTCGAGTCGGGTGTCGAGCCGCACCTGCACCACCGGGTGCAGCGCGCGGCGCGGGAACGGGCGGTCCCGGTCGCGGTCGTTCGCCGCCAGCGCGTCCTTCACATGGAGGAAGCCCAACACCGTGCGCCCGGGCCCGGTCACCGGCATCCGCGAGTAACCCGAGGCCGCCGACGCCCGTTCCAGCAGGCGGGGCGTCACCCGGTGCCCCACGGTCACCATCCGGCCCGTCGGCACCATGATCTCCGTGACGGTCCTGCTGCCCAACTCCAGCGCGTCCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 179663-179813 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000010.1 Streptomyces sp. 3MP-14 NODE_10_length_294120_cov_55.917202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179663 29 100.0 32 ............................. CACTCGTCGCGGTGCTTTCGGTCCGCGCTCCC 179724 29 96.6 32 ............................T CGAGACCCACAGGCGTGGGCGAGGCTCGGGCG 179785 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGCTCGTCCGGCCCGACGACCGTCCGCGCGTCGGCCTCGATGTCCTCGACGGTGAGGAACGCGCGGACGTCTGCGCCGCCCGCGCTCATGGTCCACCCCCGGTCGTCCAACAACACCACCCGCCGCCCGTCGGACAGTTCGGCCTCCAGCCGGGCATCCACGGACAACTGCCGGGCGGTGCTGTGTCCGGCGTTGAGTTCGACGAACGTGACGAGGCGGGCGAGGGTGGCGGACACGGGGGTCTCTCCTGGGGTGGTTCGGGTTCGGTGAGGGTAGTCGGTGGGTGGGGGCCTTCCGGGGGGCGCGGCGGGTTGGTGGCCGGAAGCCCTCTGGTTCTACCTCACCGAGGCCGACGCCACGACGTCCGCTCGCTAGGCTGAGACGAGAACTTTCGGATGCCCCAAGGGGTGGTGTTTGGAGAGGGTTTGGCCGCTATGTCGTGTTCTCTGAAAGTGAGTAAAAACCGCTTCCCCCGCCGATAAAACCCCAGGTCATCTCCT # Right flank : CCTTATCGCGTGCTCCCGCACCCGGACTTACGTTGTGTGCGGAAGCGTTCACCACGGGAGGTCGGTCACGTGAACACCATCGCCGCCGAGGGCAGTGCGATGGAACAACTCCTCGCACGGGTGGCCGAGTTCCTTGGCCGCCCGGTCTCGCCCGAGTGGGAGAACGCGTTCCGGGCGGTGCCTCGGCACCGCTTCCTGCTGGATCGGATCTGGCTGCGGGACGGGCACGGCGGCTACGACATCTGCGACCGGGCCGCGCAGCCAACGCGTTGGTGGGCGGCCGCCCATGCCGACGCGCCCGTAGTGACGCACGTGCTCACGGAAGCCGACGGAACGCGGTGCCCCCTGTCGTCGGCCTCGGCCCCGGGAACGGTTGTTGCCATGCTCGAAGCGCTCGACGTGCGGCCCGGGACCCGCGTGCTGGAGATCGGAACGGGCACCGGCTGGAACGCCGGCCTGCTCGCCTCCCGGGCCGGCGACGCCGAGGTCGTCACCGTAGA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181181-181393 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000010.1 Streptomyces sp. 3MP-14 NODE_10_length_294120_cov_55.917202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181181 29 96.6 32 ..................A.......... GCCCCTCCTCCACCTCGATGCCGACCGATGTC 181242 29 96.6 33 ..................A.......... ATGGACGAGCCCTGGGCGTGGACGACGGCATCG 181304 29 100.0 32 ............................. TCCGACTACGCGCGGTTCTGTGCGGCCGCGAG 181365 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 98.3 33 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCACGGAGCTGTCCCCCTGGGCGGTGGCTGGCGAGGACTACCAGGCCCAGTTCGTGATGGGGCTGCTGGTGCCGGGCGTCTGGCACGCGTGGGAAGCGGGTAACCAACGGGCGGGCACGCACGCGACGTTGTGGGTGCGGGCGGAGAACGACCCATCCGCCGCCCTGGTGGAGGTGGCGGCCGGAACCGGCCACACGACGGTTCGCCAGTCCGGCCCCCGCCGCCTGTGGGACGAGATCAGCGCCGCTTACGGCTGGTGGCACGCCGCCGGCTCCCCGGACATGCCACGCTTCGGTTTCACCTGCGGCGGGGACGGCACCACGACGGCCTGGCTCGACACCCCGGAACGGCAGCTCCCGGAGCCGACAACTCGCTAGTCTGGAATGAACTTCGGATGTCCCAAGGGGCGTTGTTTGGAGAGGGTTTGGCCGCTATGTCGCGTTCTCTGAAAGTGAGTAAAAACAGCCCCCCCTCGCCGATAAAAGCCCAGGTCATTTGCT # Right flank : CCTGTCGAGCGTCAACCACGGCGGATTGTCGTCTGCTCCCCGCGCGTAGGGACAGTTCCCGCAGGGGGCTCTCTTTTGGATCTTCGTGGGGCGGTGAGGGGTGAACGGGGTGGGGTGGGTGCGGGGTTTGTCTGCGGGTCGGTGGCCGGTGCGGGGCAGCCCGACTGGTCGTCGTCGGTCGACGAGGCTTGTTGTGTGGTGGTTGGGGTTGTGGCGCGGGCTACGACGCCGGGCCTAGATGGCGGACGATCGGCCGGGTGCGGGCGTAACGAATGCCGGCAGGAGGCTGGCTGGGAGGGGGGCGCGGCTTCCGGGAGGTGGAGTTTGTTGCCGTCGGGGTGGTCGGTGATGGCGGTGCGTGCCCTCCGGGCGCGGGGACCGCGCCGAGTTCGAGGGCCGGCCGGCGGCTGGGGGCGTGCGTGGCGCGCACCGGCTTCGCCGGCCTGCCCCGGCATGTCGCCCGTCTCGGATGTGGCGGATCGTCGGGCGACTCGCAGGCA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGCGCACGCGAGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1943-692 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000027.1 Streptomyces sp. 3MP-14 NODE_27_length_47604_cov_51.290604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1942 29 96.6 32 ............................A CTCCCGGCCAGCGGGCGGGGACTGGAAGCGCG 1881 29 100.0 32 ............................. GATAGGCAAGACTCGCCCCGCCATCCAGACCG 1820 29 100.0 32 ............................. GGCGCAACGCCCATCCGAGCTGCCGTGCTGCG 1759 29 100.0 32 ............................. GTCCCGTTCGGGCGCAGCGCGCGGCGTAGCCG 1698 29 100.0 32 ............................. GCGAGAATCGGGGGGGTGTCGGGCCGGCGGGA 1637 29 100.0 32 ............................. GCGTCACCGTCCGGCACCACCAGGGTCGTGTC 1576 29 100.0 33 ............................. AGCACGATGCGCACGCGTGTTGCCACAGGCGGT 1514 29 96.6 32 ............................A GCACGATGCGCACGCGTGTTGCCACAGGCGGT 1453 29 96.6 33 ............................T CATCAAGCGGGTAGGAATGTCGGTTCCTGCCCG 1391 29 100.0 32 ............................. TGGTGGGCCGCGCTGGCCATCGCGCTGGTCGC 1330 29 100.0 32 ............................. GAACAGGACATCGAGGCCGCGATCGAGGAGGC 1269 29 100.0 32 ............................. GGGGTTGCCTCCTCTGTTGGTTGGGGGAGTCC 1208 29 96.6 32 ............................T GCTTTGCCCGTCCGGAGGGGTGATGTCGGCTG 1147 29 100.0 33 ............................. GTTGTTCTTTGGTTTCCCAGGCGCCCGCCAGGG 1085 29 100.0 32 ............................. GACTGCTCGACGTCGCGGGCGATCTGCACGAG 1024 29 100.0 32 ............................. GGGGACGCCAGCATGGTGTCCACGGAGCGCCC 963 29 100.0 32 ............................. ACGGCGATCAGGCCGAGCGCGCCGGTCCGGAC 902 29 100.0 32 ............................. ACTGGGAGAACGGCCGATGTTCGCGCGACCTT 841 29 100.0 32 ............................. GTGCGGCCCGGCTCGGAGGGGTAGTGCCAGGC 780 29 89.7 30 ........T................A.G. GGCCGTGCAGCGGACGTCCTGGCGGCAGGC A,G [755,757] 719 28 79.3 0 ........T.............-..AGAG | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.9 32 CTCCTCCCCGCACGCGCGGGGATGTTCCC # Left flank : GGTGGAGGTCAGCCGCGACGGGCGGCGGGTGTACCTGACCAACTCGCTCTACGGGTCCTGGGACGACCAGTTCTACCCCGACGGCGTCGGCTCCTGGCTGGCCAAGCTGGACGCGGACCCGGAGCGCGGCGGCCTCACCCCCGACGTGCGGTTCTTCCCTCGCGACGATGCGTTCTCCGGCCTGCGCGTCCACCAGACCCACCTCGCGGGCGGCGACGCGTCCTCGGACTCCTACTGCTACCGCTGAGCGGCTGCCGGCCGCGAGGCCGGCAGCCGCGAGGCGGACGGTCGCGAGGCCGTGGGCCTCGCGGCCGATCGGGGCGCCGGGGCGCCCTGGGGGCGCCGGCGGGGCTGGCCTGCCCCGCTAGGCTCTGCTTCGGGAGAGGGGAGGAACGTCGATGAGGTGTTGCGGAGCAGCGACCACACGGGCCGCGACGACCCTCAAAGGTAAAGTAAGTAAAATCCGCCCCCACCGCCGATAAACCCGCAGGTCACGAACT # Right flank : GAGCTGACCTGGGGTTTTATCGGCGGGGTAGGCGGTTTCTACTTACTTTCACGGAAACCGGCATCGTGGACAAGAACCCTTCCCGGTGTGCCCAACTGCCTGCCGCTAGCCACGATATCGGGGTGGGTGCGGGGTTTGTCTGCGGGCCGGTGGCCGGTGCGGGTCAGCCCGACTGGTCGCCGTCCCTCAACGAGACGCGCCCACAGGGGTTGGGGCTCTGGCGCGGACCACGACGCCGGGCCTACATGGCGCACGATCGGCCGGGTGCGGGCGTAACGAATACCGGCAAGGGGCTGGCTGGGAAGGGGGACGCGGCTTCCGGGAGGTGGAGTTCGTTGCCGCCGGGGGTGGTGGGTGATGGCGACCGTGCCTTCCGGGCGCGGGGACCGCGCCGAGTTCGAGGGTCGGTTGACCGCTGGGGGCGTGCGTAGCGCGCACCGGCTTCGCCGGCCTGCCCCGGCATGTCGCCCGTCTCGGACATGACCGATCGTCGGACGACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACGCGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7032-7673 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000028.1 Streptomyces sp. 3MP-14 NODE_28_length_44734_cov_52.106530, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7032 29 100.0 32 ............................. AGCACGGTCACGGTGCGGACGGCCACGGCTAC 7093 29 100.0 32 ............................. ACCCCCTCCATCGCCACGCCATCGCCTCTCTG 7154 29 100.0 32 ............................. GACTGGGCGTTGTGGGAGGAGTTCCACGGCTG 7215 29 100.0 33 ............................. TCGGCCGCCTACCAGCCGGCGGTGGACTTCGAG 7277 29 100.0 32 ............................. CATGTCGGCTCCCGAAGTCGCGGTTGCGTATG 7338 29 96.6 33 ............................T AAGGGCGTGGCGAAGTCGGCACACCAACAGGGC 7400 29 100.0 32 ............................. CAGTCGGCCAGGGGGTGGACCTCCAGGCCCAG 7461 29 100.0 31 ............................. GGCATCGACGTCGGGACGTTGCGCGGCGACC 7522 29 96.6 33 ...T......................... GGTGGTCTGGGTGCCGGCGCCGATGATGAGGAT 7584 29 93.1 32 ...T.......A................. GACCTCAAGGCCCGCGCGAAGGCCCTCGCCGC 7645 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.4 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : GGTCTTCACCGGCGTCACGGACCCGGCGCTGCTGCTCGCGGCGGAGCCGCGACACCGGCCGACGTATGTGGCGGCGGACCTGCGGGGGCTGCTGACGCCGCAGGCGTCCGTCGCCCCGGAGGGGGCGGGGTTCCGGTGCGGTGGATGGCGGGCGGAGGTCGTTGACGGCCGGGCCCGCCTTGCGCCTGGCGGCGGGGCGTCGCCTGGCGGCGGGCCTCGGGACGGGGCGTCGCCTGGCGGCGAGCCCCGGGATGACGCGTCGCCTCGCGGCGGGCCCCAGGATGACGCCGGCCGGTTGGACGGCCTGCGGGCGCTGTGCGCGGCGGTCTGGTCCTCGCGCGAGCCGCTGCGCGCGGAGGCGTATGGCGCTGCGCTGGCTGAGCTGGGGTGGTGACGGGGCTTGGCTGGCTGGGGAGTTGGGGGCGGGGCTGGTTCTTGGGCGGTAGGTAAAGTTGAGTAAAGGGAGGGGGAACGGGGGATAGAACCGCAGGTCGCGAACT # Right flank : ACGGCCGAACCGACGTGGTGCTGGAGGCGGGGGGCGCCCTCCGCAAGTGCCTGGGCGCCCCGAGCGGGGGCCGATTGGACTCGAATCGGCCCCCCGTTCGCTCCGCGCAGCGGGAACGAGCCCTGCCGCCCCGGCAGGGGTTCCCCCGCCGGCCCCCGGGGGCCGGCGGCGGGCCGGGTCGGCACCGCCCCCTGGGGCGGTGCCGTCCGGTGGGGCCGCTGCGGCCCGAGCAGATAGGTTCGGGGTATGGGTGCAGCGGAGTCCGAAGAGGCCGGGGCCGAAGTCGTCGACGACGGGCCGGAGCCGTTGGGGGTCGGGGTGGCGTCGACGGGGCACGGGCCCGTCGACGCCGTGTTGGCGCGGCTCGCCGACGTTGACCAACTCGGTGTCGGCGGGCATCTGGAGGTGTACGAGGATGTCCACGACGGCCTGCGGCGGACGCTGGCCGCGCTCGACGAGCAGCAGCAGCGACCACCCGGCCCGCCCGTGGAGCGGGCCCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 358889-357879 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000003.1 Streptomyces sp. 3MP-14 NODE_3_length_514729_cov_57.431895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 358888 30 100.0 31 .............................. AGCGGTACAACGAGTGCCGCCCCACGGTCTT 358827 30 93.3 31 ............................TC AGGTCTGGCTCCGTGGACGCATCTCCGCTGC 358766 30 96.7 32 .............................T GGTTGACGTACCGGATGACGTACGCGGCGGGG 358704 30 96.7 32 .............................C GGTGACGCCGCAACGTCCCAGCGTCGAGTTCG 358642 30 96.7 31 .............................A GCATCCGGCGTCAGCAGCTCCACCCGATCGT 358581 30 100.0 32 .............................. CCACGGGCCGCCATGTGCGGAACGCCCGCGCC 358519 30 100.0 31 .............................. CCCTAAGGCTGTGGATCTTCTCCGGCGGGTT 358458 30 100.0 31 .............................. GCCCCGCGCCGGGGCGGCGGCGGGGCACAGT 358397 30 100.0 31 .............................. TTGGGTCGCCCGCGCCGTCGGCAGCCCAACC 358336 30 100.0 31 .............................. AGCGCACCAGCGAGAGCTACGCGCCGCTGGA 358275 30 96.7 32 .............................T CTGCCGCCGCAGTGCGGACGTCCTGCGCCCAC 358213 30 96.7 31 .............................T CCTTCAGGCCGGCGGCGATGGTGAGCCACCG 358152 30 96.7 31 .............................A GGATCAGCGTGGGCCGAGGCCAGGAGACAGG 358091 30 100.0 31 .............................. GGTGCGCCCGCCGCGCACCTCGGCACCGGAG 358030 30 100.0 31 .............................. AGGCACGAGAGGCACGAGGGAATCTCCAAGA 357969 30 96.7 31 .............................C GCCCATAAAACGTCCCCCGTCTCGCCTGTGG 357908 30 90.0 0 ............T.........C...G... | ========== ====== ====== ====== ============================== ================================ ================== 17 30 97.7 31 CTGCTCCCCGCGCGTGCGGGGATGTTCCCG # Left flank : GATCGACGCGGACGGACCGATCTGGTGACGGTCATCATCCTCGCGAACTGCCCTGCCGGGCTACGTGGTTTCCTCACCCGCTGGTTGCTGGAGATCTCCCCCGGCGTCTTCCTGGGCGCGCCCAACGCGCGCATTCGGGACATCCTCTGGGAGGAAGTGCGCACCTACTCGGGCAAGGGCAGGGCGCTCCTTGCGTACCAGGCCGACAACGAGCAGGGCTTCAGCTTCAGAACCCACGACCACGCGTGGCACCCAAAGGACCACGAGGGCCTGACCCTCATCCACCGCCCGGAGCGGTCACCGGATACGCCCGGCACACCTCAAGCTGGGCCACAACCGCCCCGGCAGGGGTGGAGCAAGGCCGCTAAACGCCGCCGCTTCGGGAGGTGAGAGGTTTGACGAGGTATGGCGGAGAAACACCCGGTCTACCCCTTATGGGGGTTCAAGGTAAAGTAAGTAAAATCCGGTCCGCCCGCCGATAAACCCGCAGGTCACGAACT # Right flank : AGCTGTCCGCCTCCGGCGGTTCATCCGCCGGGGCGGCGCAGGCGCTCCCGGAGGGCCTGGGCGCGGGCGTCGTGCGCTTCGCCCATCAGCCGCAGCGCCTCCGCGCGCCGCTCCCGGGCCGCCGCCGCGTCCGTTCCGGCCAGCGCGTCGGCCAGCGCGGCGAGCGCCAGCGCCGCGTGCCACCCGTCGCCCAGCCGCCGGTACACCTCACCCGCGCCCTGCCAGGCCAACGCCTCCCGGCCCCGGTCACCGTACCGCCGGTGCAGCGCCGCCGACCGCTGGTAGGAGACCAGGGCCTCCGCCGGCTCGCCGGCGGCCAGTTGGGCCGCGCCGAGCGTCAACAGCCAGTAGCCCTCAGGCCGCAGGTCGCGCAGGTCGAGCGCGATCCCCACCGCCCACCGCGCGGCGTCCAGCGCCGCCGCCGTCTCGCCCTGCTCGCGCAGCGCCTCGCTCAACACGTGCAACGCGTTGCCCTCGCCCCGGCGGTCGCCCAGCGCGCG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGTTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 468108-468258 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000003.1 Streptomyces sp. 3MP-14 NODE_3_length_514729_cov_57.431895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 468108 29 100.0 32 ............................. TGCCAGTGGCCGCAGGCCCTCCAGGGAATGCC 468169 29 96.6 32 ............................G TCGCAGGGGGAGGTCGCCCGCCGGCTCGGCAA 468230 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : AGGCCGGCGAAGCCGGTGCGCGCCACGCACGCCCCCAGCCGCCGGCCGACCCCCGAACTCGGCGCGGTCCCCGCGCCCGGAGGGCACACACCGCACTCCCGACCACCCCTGGCGGCAACGAACCCCACCTCCCGGAAGCCGCGCCCCCCTTCCCAGCCAGCCTCTTGCCGGTATTCGTTACGCCCGCACCCGGCCGATCGTGCGCCATCTAGGCCCGGCGTCGTAGCCCGCGCCAGAGCCTCCACCCCCGTGGGCGCGACTCGTCGACCAACAAACGACCAGTCGGGCTGCCCCGCACCGGCCACCGGCCCGCAGCCTTCGCCTTCCAACGCGCCGGGACCGTGCCTCCGGCAGAGGCGCCGGCGAACGTCCCACCCCGATATCGTGGCCACCGTCAGGCAGTTGGGCACACCGGAAAGGGGCTTTCGTCCATGATGCCGGTTTCCGCGAAAGTAAGTAAAAACCGCCCACCCCACCGATAAAACCCCAGGTCATTTGCT # Right flank : CGGCGGGGGCCCGTCTCGGGCGTGACCCGGGGCCGGTGACGGTGGTTCTGGTCGCCCGGCTGATTCCAGGGGCCCCTTCCTTCCAGCTGCCCGTCCGGAAGTGAACAGTTCGTTCAACGCCCCAAGCCGCCGCCCGTTCCGTCACTCCCAAAACACCCGGCCACCCCCGGGGCCTCCAGGCCCCCAGGGCCTGGGGCCCCTCCCGGGCCTCCGGCCCGCTTCCGCTGTCGCTCCAGAGCCCGTCTACCGTCCTCGCCCACGGTGAAGGGCGGGCCCATCGTCCCGCACCCCCGATGGTTGAGGAGAGATCACCGTGACGGAACCGCAAACGCGCGCCGCCCCCCAGCCGCTGCCCGGGTTGAAGGGCAAGAGCGCCCTGGTCGTCGGCGGCACCCGGGGCGTGGGCCGCGCCGTCGCCGAGAAGCTTGCCGTCTCCGGCTGCGATGTCCTCGCCGTCTGGGTCAACTCCGCTGAGCACGCCGCCGAGTTGGAGGAGGAGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 243003-242730 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000005.1 Streptomyces sp. 3MP-14 NODE_5_length_484291_cov_52.149237, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243002 29 93.1 32 C............A............... GTCACAGCGCCGATCCAGCTGTACGCGGAGCT 242941 29 96.6 32 .............A............... TCCGCACCCGCCTCGCCGCCCTCGGCGTCCCC 242880 29 100.0 32 ............................. TTGCGGGAACCTGCCCATGGTCTCGGGCGGGG 242819 29 100.0 32 ............................. CCGCCCGGGGCGGCCGCCTCGGTGGCGACCGC 242758 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTCTTCCCCGCACGCGCGGGGGTGGTCCG # Left flank : CCGAGCTGCGGGGCGAGGTCGCCGAGGCGTTCGACCTGCACCGGAGGGGGCTGGCCGCCGCCCGGGAGAGCGGCGACCCCAGGGCGGTCGCCCTCGCCCTCGAAGGACTCGCCGGGGCGTATGCCTCCGGCGGTCAACCGGTGGCCGCCGCGCGGCGCCTCGGCGCGGCGGCCCGCCTCCGCGAGGCCGCCGGCGCGCCGCTGCCGGCGGCCGAACGCGGGGACGCTGGCCGCGTGGCAGCGGAGGCGCGCGCCGCCCTGGGGGCGGCGCGCTTCGCGAGGGAGTTCCGGGGGTGCCCTCCGGGCGGGCGCGGGAGCGACGCCAACGCCGTTGTCAGTGCCGGCGGTTAGTTTTGAACGACGGTCGGTGACGGGCGTCGTGGAACGGAACGGGGGGACAGGAGAACGGGAGGCGGGATGGTGCGGCACGTGGTGAACTGCGGTTCGGTGTGGGGAGGTCAAGTAATGGCAAAGCGCATCTGACGCCGCAGGTCACGAAGT # Right flank : GTCCGGCTGCGGTTTGCAGCCGGTCCCGGCGGTGACGGGTTGGGGGCGGCCCTGCGGTCCCGGGCGGGTGCCTCGGCCCGGGACAACTCCTGTGCGTCGGGCATAGGTTGACCGTCATGGAGATCACCGTTGACCGCACGAGCGTCGCGGCGGGGGACGACGCGCTGCCGCATGTCAGGACCCTCGACGTGCCGGCCGATGCCTCGTTGGGCCGGGTGGTCGCCGGGTTGCTGGCGGACCGCTACCTGGCCACCGTCGCCGGCGGGCGGGCGACCTGGATTCTCACGGTGGGTGGCGAGCCGGTGGGCGTGGTGGCGCAGCAGTGGGCCGCACCCCGGTATCTGGTGGACGCCGACCGGCCGATCGCCTCGTTCGCCGCGCCCGAGGCGCCCGAGACCCCAGACCCCGGCGTCGCGCTGGTGTTCCGCTACTGGAAGCAGCACGATCCGGACGGTGTGCTCGCCGCGCTGGCTGCCGGGCGCTGGCCGGCCCGCTGAGCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACGCGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 322549-322216 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000005.1 Streptomyces sp. 3MP-14 NODE_5_length_484291_cov_52.149237, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 322548 29 100.0 32 ............................. TGGGGGGAGAGCGCGTTGCCGGATGTGGCTTC 322487 29 100.0 31 ............................. CGTCGTTGTGAGGGGAGCGACGACGAGTTGG 322427 29 100.0 32 ............................. TTCCCTCCGCCGATATAGAGGCCGACGTGATC 322366 29 100.0 32 ............................. CTCGGCCGAGTCCTCCCCGGTCCCGCACGGCT 322305 29 100.0 32 ............................. CCCACGAAGCTCCAGAAGAGCGGCAGCCCGGA 322244 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 CTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : AGGGTGAGTACGTCGAACGACGATTCCATGACGTCTCCCTTGGCAGGCAAATTGAGCTATGCCGACTCAATGCCGGGAGGGCGGGGGTTGTTCCCCGGGGTGCGGGGCGTTCGCTGTCGGCGATCAGGCGGTCGGGGCTGGACGGGCCTGGCCTGGGCGCGGCCTCGGGAGGCCGGGTACCCGGAACGCCGGCGGCGGCCACCGTTGTTCCGGAACGGGGCGGCCGTCGAGGGCGCGGGGCGGGCGAACCCGTTTCCGTTCCGGGGCGTTCGGGCACCCGAGGGCGATCGCTCGGCGGGCTGTCGCGCAGCGACAGGACGTCGCCGGCCTGCGCCCGGCCCCGGCTACGCTGACGCCGTCAGGGCGGCGCGGCGCCGCCTCGGAAGGCGGAGCCATCGGTGAGCCGTCACGAAGCAGTGACCACTCGGCCCTTGTCGGGCCCAAAGGTAAAGTTGAGTAAAGTCAGCCCCTGCCCCCGATAAACCCGCAGCTCACGACCT # Right flank : GCAGGAGGCTCGTATGTTCCGCGCCATCGCCGACGTCCTCCGGGCGGTCGGCGCCGTCAGCACGCTGGTCACGCTGCCGTTCCGGGCGCTCGCCCGGCTCCTCGGCGGCGCTTCGAGCAGCGCCGGGGGGCCGCCGCTGTACGGGCCGCGCGGCGCGGCCCGTACCGGCTACAGCTCGCGCAGCGCGTTCCGCAGGAACGCCTCGGTCTCGACCGGCGGCATGGCCTCGACGGCCAGCCGGTTCATCACATGCCGGTACTGCTCGACCTCGCCCGGCTTGTCCGGATACGCCCCGCCGGTGAGCTGCTCCAGATAGACGACGTCGGGCAGTTCGCCGCCCGGCGGCCGCAGCACGGTCACCGGGCCGGCGATCGCCGAGTGGGCGCCGGCCGAGAACGGCACCACCTGCACCGTGACGTGCGGCAGCTGGGAGACCTCGATCAGATAGGCCAACTGCCGCCGCATCAGCCCGCGTCCGCCCATCGAGCGGCGCAGCGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 120366-120638 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000008.1 Streptomyces sp. 3MP-14 NODE_8_length_310773_cov_54.726631, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120366 29 100.0 32 ............................. AGCTTGGCGACGCGGGCCACGACTTCCCTGGC 120427 29 100.0 32 ............................. CAGCGATCGAGACCGACAGCGAACCCATGGCC 120488 29 100.0 32 ............................. CGAACCGAGGCGCAACGCGCCTACACCGCCGG 120549 29 100.0 32 ............................. GTCCATGCGGGCCGCCACCAGGGGCGGGTGTC 120610 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGGTGGTGTTCGACCTCCAGGAGGGCACCGGCGACTGCTTCCCGGAGACCGAGGACTCCAACCCGGTCCGCTTCACGGCGATCACCGACACGGGCCGCGCGTTCGGCACGGCCGAACCCCCGGACGACCCCTTCGGCGACATCCCCCTCCAACTGGACCTCGCCACGGGCGAAATCACAGACTTCGCCGACCAGGACCCGCCCCCCGTCTTCCCCACCACCGACATCGACGGCTACGGCATCTTCACCGACGACCCGGACTACCCGACGGTCACCGTGATCTACCCACCGGCCGAAGGGGGAGACGCGTGATGCGTGGTGCGTGAACGAGGAACGATGGGGGAGTGCGGGCCTGGCAGCGCCGGCGAAGAGCGACGAGGAGAGGACCTGCCACGGATGCTGCGGATGGGTGGGGCGTGGGGTGCTTCGCCCCATAGGTCGCGTTCCCAAGAAGTAAGTAAAATCCGCTTCGAGCGCCGATAAAACCCCAGCTCACGAACT # Right flank : CCGGGCGTTCGTGCATTGATCAACTCGGATGCCCCGGCGTCCCCTTGCACACGCCAGACCCCCCGCCCCCGGCGCCGCCCAGGTGCCAGGGCCCCGCGCGGCGGCCCCCGCCCCGGCGGCCCCGCGCCGGCGGCGCCCCCTGCGCGGCTCGTGCCCCACGGGCACGAGCCGCTTCGCGGGCCCCGTTCCCGACCGGTTATGCGAACGGCGTTCGACAGCTAGCATCGCCGACGGCATGGGAGCGCTCCCGCGCGTTGCCTCCCCGTGCGTGCGGCGGACCGAAGGCGTGGTCGGTGCCGCCCCGCCGGGGAGGCGACGCGCACCCCACCCCAACCTCACACCCCGGCAACGCCCGCAACCCCGCAACCCCCGCACCAGCCCAACCCCCCACCACCCCCAACCCGGAAGGGGCGCACGTGAAGAGCCGCTCACGACCGTTGTTGACCGTACTGGCCGCGATACTGGCCGTTCTGGGCCTGGCAACCCTGCCCGCCCTCTCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107366-106730 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000007.1 Streptomyces sp. 3MP-14 NODE_7_length_395005_cov_59.879251, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 107365 29 100.0 32 ............................. GCGGCTGCCTCGCCGCCCGGCATGGTCGCTTC 107304 29 100.0 32 ............................. ACCGCCTGGCAGGGCGGCATTGACGCGGTCAA 107243 29 100.0 32 ............................. CTCGGGCGGGACTGGGATCTCGTAGATGTCGG 107182 29 100.0 32 ............................. CAGCAGTGGAAGAACCAGCCGCAGACCATGTT 107121 29 100.0 32 ............................. TTGCCGTTGCTGTTCCCGTTATGGGTGAACCC 107060 29 89.7 32 ..............T..CC.......... TCACAGCCCGTCTGGGGCCTGTCTGGGGCGGG 106999 29 82.8 27 .........AGA..T............T. ATCGTCGAGTCCGCCCCGCGCCACATC 106943 29 100.0 91 ............................. CGCAGCGTCGCCCCGCGCGGGGTGAGGGTTACGTCTTCCCCGTGCGCGGGGATTGGTCGGCGGTCGTCGCTAGGTCCGTGGATATGCCGGT C [106934] 106822 28 82.8 33 ..T..........-.......A..G...C TCGTACAGGGTCTCGCTCGGGGCACACCACCCC A [106811] 106760 29 79.3 0 ..A..........C....A..C.T.C... | CA [106737] ========== ====== ====== ====== ============================= =========================================================================================== ================== 10 29 93.5 38 GTCCTCCCCGCGCGAGCGGGGGTGAGCCG # Left flank : GACGGAACGCTCAGCCCGCGCGTGCTCCGCTCGGCCGCCGGGGCCGTGGCCCCCGGCGGCACCCTGCTGATCGAGGCCCACGGCGGGCCGCCGCCCTGGCAGCACGACCTCCCCGACGACCTGGCCTTCCCCACCCCAGAGGAGACCGTCGCCACGCTCCAACTCCCGCCCGGCGAGTGGGAGATCCTCCGCGCCGAACGCCACCCACGCAGCCAGCGCCACCCCCACACCGGCGAGATGGCCACCCGCGAGGACCAGACGGTGCTGGCCCGCAGAGCGCTGCGCTAGCCGGACCGGAGTCGGCGGCGCGGCCGCCGCCGACGCGGCCGCGCGGGGCGCGGCCGGAGGCTGGCGGGCCCTCAACGGGCGCTCGCCGCACGGGCATTGTCAGAGGCACCCGATACGGTACGAGCCATCCACCGAGGAGGAGGGCCGCGTTGCACGCGAGAGATGAAAGCAAAGAAACGGCAAAGCGAGTCTAACGATGCAGCTCAGAAAGT # Right flank : GCGCCCCCGCGCCAGCGGGCAGGCCCGGCACGCGGCCGCACCCCCGCGTCCCGGCGCCCCCGCGCCAGCGGGCTCCGCGCCAGCGGGCCAGCGGGCCCCGCGCCGGGGCGGCTTCGCCCGGGCCCCCGGGGCCCGGGCGTTCGCTAAGCCGGGCCGGCCAGGCCCCCGTGGGTGAGGACGTTCACCACCCGCCCGCTGGGGTCGCGGACAAAGAAGCGGCGGACGCCCCAGTCCTCGTTCCGGATCGGGTGGACGATCTCCGCGCCGGCGGCGCGCATCGCCGCGTAGGCGGCGTCCACGTCCTCGACCTCGACGCTGATGTCCGGGGCCACCGGCCCCGTCTCGTCCTCCCCGGTGTAGAGGCTGATCTGCGCGGTGGGGTTGGTCGGGGAGACGAGGGTCATGATCCAGCCATGGTTCATGGCCTCCTCGAAGCCGAGCCGCTCGTAGAACGCGCGGCTCGACTCCCCGTCGCCCGTGGGGATGTTGGGCACGACGCG # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.62, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 166859-166647 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000016.1 Streptomyces sp. 3MP-14 NODE_16_length_228103_cov_52.189235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166858 29 100.0 32 ............................. TCCGGCGTCACGCCGACGATCTTGGAGCCGGT 166797 29 100.0 32 ............................. GGAGAGGAGACCGCCGCCATGCGCGAACTGGA 166736 29 100.0 32 ............................. CGGTACGGCGCGCCGGGTTCCCCGGTGGCGAG 166675 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : TGCGTTGTTTACGGGTCGTTTGGTGGGTGGGGGCGTGCGTAGCGCGCATCGGCTTCGCCGGTCCGCTGCGGCGCGTCGGGCTTTATCGCGGGGTGGGTGACGGTGTTCGGGTTGGGCGGGTGGTGTCGTGGGGCGTGCGGTCAACGACCACGCTGCCGCGCGAAGATCGCCTGCCGTCGGGGTGGTCCGCGCGCCGTCGACTTCCGAAGGCGGGCGCGCGCGGGGGTGGGAGATCTTTTCTCTAGGTGCCCGTTCGGAAGTGAACGGATCGTTCAACACCCCAGGCCCGCCCGACCCTTGCGCGGACGCCGTCACCCGCAGGGCGCCCGGATGTGGTGCCGCCCGGGTCTGACAGCACGGCATGACGGTCCTCGGTATGGTGGCTGGCATCGCACAGCGAGGAACGCCGAGGAGGGGATGGGCTTTTGTCCACGATGCCGGTTTCCGCGAAAGTAAGTAAAAACCGTCCTCCCCGCCGATAAAACCCCAGGTCAGCTTCT # Right flank : GGCGGCCTTCCGCCGGCCGCGACGACCCGAACACCGTCACCCACCCCGCGATAAAGCCCGACGCGCCGCAGCAGACCGGCGAAGCCGATGCGTGCTACGCACGCCCCCACCCACCAAACGACCCGTAAACAACGCACGGTCCCCGCGCCGCCGGCTCAGTAGGCCAGCGCCAGCACCTCGTTCTCCCAGGTCTCCAGCCGGTGCGGCCCGGTCCCCGCCGGCAGCGCCGCGCGGTCGCCGTGCACGGCCTGCCGGCTGCCGTCGGGCCGCACCAGCGCGGTGCCCTCCGCGTCCAGGGCCAGCAGGCCGTCCCCGACCCGCAGCAGCAGCGGCGCGCGCGGCCCCGCCGAGACCGCGACCCGCCCGTCGGCCAGCGCCGCCAACACCGCGTCGGACGAGGCGTCCTCGGCCAGCACCCAGGTCGTGGGCCGGCCTGGCAGGGCGTCGTCGCCCAGCCGGTGGAAGTCGCTGCCGCCGAGCGCCACCACGTCGGGCCGCCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 198178-197844 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLZ02000016.1 Streptomyces sp. 3MP-14 NODE_16_length_228103_cov_52.189235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 198177 29 100.0 32 ............................. GCCCGTCACATAGCGCTTGCGGTCGGCGAAGT 198116 29 100.0 32 ............................. GCCGGCGCTTCGTCCTGGAGCGCGCGGAGCCC 198055 29 100.0 32 ............................. ACCCCAACGGGCAGGGGCTGCCCGGTCCCGAA 197994 29 100.0 32 ............................. CCGGTGAGTGGGTCACGGTGTGTACTGCCCAG 197933 29 100.0 32 ............................. CGGCGGGCACTCCCGCCGCACGAGATGCGGTT 197872 29 89.7 0 .....................G....T.T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CAGGGGTTCACTCATGCCGACTCGTCTCCGTTCTCCAACAGGTCTGCGATGGCGGTGGTGATCCGCAGCCCGGCCGCGTCTTCGAGTCACTATCCGCCGTGGGCGGTCACAGAGCAGTCGAAGGCGCCGAAGTTCAGCCCGAAGGCGGCCAGGAACCGTACGAGCGCCCGCCGTATCACCTCCGGGCCGGCAACCGGTCTGGTTCGCGGCAGACCGGCGGGTTACGCCCAAGACCGGCATCGCCAAGGCGACTTCGACAACCTCCGATAGCCCCAAGACCACCGCCCCGACCAGCCAGCAGCTTCCCCCGCCCCAACAGGCCGAGCGGGGCGCCCCTTTCACGCGGAACGCCCTCGCCCGAACACCCCACCTCGGTATGGTGGCCGGCGTCGAGCAGTGAGGAACGCCAAGGAGGGGAATGGGTTTTGTCCACGATGCCGGTTTCCGCGAAAGTAAGTAAAAACCGCCCTCCCCACCGATAAAACCCCAGGTCAGCTTCT # Right flank : CTTGGCGGAGGCAGCGCCCGGGGCTGATGCCGCAGTTTGCCGGGTGTCAGGCTCGGGTCACGCTCAGGTGGGGCGTTGTCCGGCGGGGGCGCGGGAGGCTCCCACCTCCGGGCGCGCCCGCTGCGGGAGTCGGCGGGGCGCGGACTACCAGGACGGCAGGCGATGTTCGCGCGGCAGCGTGGTCGTTGACCGAACCCCGCGAAGCACCGCACCCTGCAACGACCAACCTTCACCGTCCCCGTGAGTCGCCCGACGATCGGCCACACTCCGGGACGGGCCACGCGCCGCAGCAGGCCGGCGAAGCCGGTGCGCGCCACGCACGCCCCCACTCACCAACCGTCCCTCGAACTCGGCGCGGTCCCTGCGCCCGGAGGGCACGCACCGCCATCACCCACCACCCCGCCGACAACGAACCCCACCTCCCGGAAGCCGCGCCCCCCTTCCCAGCCAGCCCCTCACAGTCATTCGTTACGCCCGCACCCGGCCGATCGTCCGCCATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //