Array 1 108-977 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QZHH01000115.1 Moraxella catarrhalis strain COPD_M58 NODE_115_length_1735_cov_18.1101, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
       108	    28	 100.0	    32	............................	AATCAGACGCTCTCGATAAAAATCAAACTCAG 	
       168	    28	 100.0	    32	............................	ACTAAAAATATCAGCTTAAATGAGCTGTTAGC 	
       228	    28	 100.0	    32	............................	TGTTAAGCTTTGGTTAAGTGTATTAATACTAG 	
       288	    28	 100.0	    32	............................	TTTGATGGCACACAGGATATTACTTTACCTAC 	
       348	    28	 100.0	    33	............................	GCTCCGCCAAAGCCATTATTGGGGCGGTTGCCA	
       409	    28	 100.0	    33	............................	TCATTATTACCACCTGTACCAACATTCCATTCA	
       470	    28	 100.0	    32	............................	GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 	
       530	    28	 100.0	    32	............................	GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 	
       590	    28	 100.0	    32	............................	ACAGGGAGATTATCGCAAAAATACAGCCAAAT 	
       650	    28	 100.0	    32	............................	AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT 	
       710	    28	 100.0	    32	............................	ATGCCTGACACCACACCGCCTGACTGCACTTT 	
       770	    28	  96.4	    32	..........A.................	TAGCACCGCCCAGCCGCCCACACACGCACATC 	
       830	    28	 100.0	    32	............................	ACATCATCGCCGACATTTTGCACGATGACAAG 	
       890	    28	 100.0	    32	............................	AAGCGATTAATCCGCTCACCAATTGTTCTGTT 	
       950	    28	  96.4	     0	..........A.................	|                                	
==========	======	======	======	============================	=================================	==================
        15	    28	  99.5	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                 	       

# Left flank :   AACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACTC
# Right flank :  ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-7.40,-7.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//