Array 1 51846-52320 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDRZ01000014.1 Micrococcus luteus NCTC 2665 strain DE0446 NODE_14_length_52438_cov_96.961604, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 51846 36 100.0 34 .................................... TCCGTGGCGGGACCATGTATGCGATCTGGCGGAC 51916 36 100.0 38 .................................... GGCATCCGCACCGTGTCCTCCCTCCTCGCGACCGGGCA 51990 36 100.0 39 .................................... TGCAGCCCGTCATGGGACAGGCTCGGCGGGTACGTGCCG 52065 36 100.0 38 .................................... CAGCCAGCCGGGAGCGTCTGGCCCACCCGTGAACCGGT 52139 36 100.0 38 .................................... GCCGCGGACCGCACCGAGGTCGATGACGCGACCGCCGG 52213 36 100.0 36 .................................... GACGCCGAGCCCTTCATGGCGTCGTAGACGCGCTGG 52285 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 100.0 37 GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Left flank : GTTGAGTGCCCGGGATCGTCTCCGGAGGAGGCTCATCGCCTATGACATTCCTGACGACCGCCGCAGATCCCGGGCGGCCCGCGTCCTCGAAGGGTTCGGAGATCGAGTCCAATATTCAGTCTTCGTGGTGGATGCCTTGCCCGCCCAGTTCGTCTCCCTGCAAGCAGCCCTCGAAGCGGTGCTGGATCCGGGCGAGGACAGCGTGCTGGTCTGCGACCTCGGCCTGACGGCCACGCTTGGCGCAGAGCAGTTCAGCTTTCTGGGTCGATCACGCGAGATCTCTGTGGATGGGCCCATCATCATCTGAAGCGAGCCAGGGACCTTCGCGAAGGCTCCGTCGATGTCCGGAATCCGGCGAGCCGTCGCATCAGAAAAGGGCTTGTCAGCCCACGGTTCATGGGTCGAGGCCGATAAGCATGGCGCTCCACGGACGCCTCTTGAGCCCAGGGCTCGCCGACGGTCGCGTCTGCCCATGTCAAAGGGCTGTAATCTGAGGTGCT # Right flank : CAGGGCAAGCACGAGGCCCCGGACCCCCGCCACCACGGTCTCCGCTCCTGTGGGGTGTCAAGGGCCATTGAGTTCTGCCCATAGGCGGCCAGTGTTTCTTCCCGCTGGTGGCCATCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 117275-118457 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDRZ01000009.1 Micrococcus luteus NCTC 2665 strain DE0446 NODE_9_length_118507_cov_84.818505, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 117275 34 83.3 35 CG..-...........T....G.-............ GGCAAGCAGGATGACGACCCCGGCTACATCCTCAC 117344 36 97.2 36 .......................A............ CGGGGCCCACGAGGTGGGCGAGGGGACGGACCGGCT 117416 36 97.2 36 .......................A............ GCGGCGCAGGTACCGCTCGCCGTGGTACTCGTGCCA 117488 36 97.2 35 .......................A............ CGGATGAATCCGAGCCAGTCCTGCTCGATGTTCGA 117559 36 100.0 34 .................................... CCACGTCCTCGCCGAGGATGCGGCCCGCCTCGAG 117629 36 100.0 36 .................................... CCAGACCGCGGGCTGCCAGTCGATGCCGCCGTTGCC 117701 36 100.0 34 .................................... CAGGAAGAGGCAATGCCTGGGGCCGCGCCTGCGG 117771 36 100.0 37 .................................... CTGCGCGCGTGGTCTCGAGGTCCTCGCGGCAGTCGTC 117844 36 100.0 37 .................................... TCTTCAATCCGTGACATCCGGTATCCGTCTGACTACG 117917 36 100.0 36 .................................... GTCCTCGGCGTAGCGCAGCGGGCCGGTGCCGGCGAG 117989 36 97.2 40 ..............................A..... CGCCGGACACGCAGTCACGCCAGCCGTAGGGGCTGGTGAA 118065 36 100.0 35 .................................... GACGTCCCGGAGATTCAGCAGCTGGACCTGCTGGA 118136 36 100.0 34 .................................... GCCGCACCCCGCCGCCGTCCTCGTTCGCGGTGAA 118206 36 100.0 35 .................................... ATGACCTCCGGCAGCGACGTGACGCCCGGCCCCAG 118277 36 100.0 35 .................................... CTGAACAGCACACCCGCCCGCGGCCCCGCCGCTGA 118348 36 100.0 37 .................................... TCCCTGCCCACGACGATCGGGGCCAACGCCGCTTCGG 118421 36 86.1 0 ........................T.A.....CC.T | T [118447] ========== ====== ====== ====== ==================================== ======================================== ================== 17 36 97.5 36 GCCTCAACGAAGTCCGCTCCCCACAGGAGCGGAGAC # Left flank : ATCCCCGAGGCCCGCGAGAAGGGCGGGGAGAGGGCCGGGCTCCTCACCGTGGTCGGCTTCGCGCTCGGCGCGTTCCTGTCCCTGGTGGTGTGAGGGGGCGAGACGGGGCCGACTGCTTCCCGCGGGCTAGACGGCCGCGTTGATATAGACCGCGCTCGTCGCCGAAATTTTGCTGCAGCTGGCTGCGCGCCGGTCGCGCATGCGGGTAGGGGAGATGCCGGATGAACTTCAACGCGGGACAGCACGTGACGCCATGCGCCGGGCATTGGCCCAGGGCATGGCCTTTCCCCGACTCGCCTTCAGCCTTGGCTGCGAGCCAACAGATTCGCTACTGATGCTCACTCCATGGAGCCACGCCCAAGACCTCGCGAACGCGTGACGACGGGCGCGGACGTCACGTGCGTGATTCGACCCCGTCGAGGCGCCTCGCCCTCGACAGAGTCGAGCGAATTGACCAGGGAGGAACACGGTCTGAGCCCTACCCCGCCTCGGACCTGGAT # Right flank : GAAAAGCTGCCCATAGGTGGCCAGGGAATGACCCGCTGACGGCCATGAGG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAACGAAGTCCGCTCCCCACAGGAGCGGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //