Array 1 166956-169119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014161.1 Aerococcus urinae strain CCUG36881 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 166956 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 167017 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 167079 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 167140 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 167201 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 167262 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 167323 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 167384 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 167445 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 167506 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 167567 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 167628 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 167689 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 167750 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 167811 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 167872 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 167933 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 167994 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 168055 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 168116 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 168177 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 168238 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 168300 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 168361 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 168422 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 168483 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 168544 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 168605 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 168666 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 168727 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 168787 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 168848 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 168909 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 168970 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 169030 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 169091 28 75.9 0 ......-....C.......T.T.A...TG | A [169109] ========== ====== ====== ====== ============================= ================================= ================== 36 29 97.6 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 188070-188889 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014161.1 Aerococcus urinae strain CCUG36881 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188070 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 188131 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 188192 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 188253 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 188314 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 188375 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 188436 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 188497 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 188559 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 188620 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 188681 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 188742 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 188803 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 188863 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //