Array 1 9799-8575 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAGD01000062.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22466, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9798 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 9732 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 9666 36 100.0 30 .................................... CTGACCACACCTATCCGCCAGTGCTTATGC 9600 36 100.0 30 .................................... AAGCCGGTTTATGGCAATTCTGCCGCGTCC 9534 36 100.0 30 .................................... ATGCCTTTTTTTGTACTGTTGTTTGAACGA 9468 36 100.0 30 .................................... AAATTCGTTTCAGATAGCAAACGCAGTAGT 9402 36 100.0 30 .................................... GCCGGATATGACGGTGGGCAACTGGTACAG 9336 36 100.0 30 .................................... ATTTCGCTTTTGTATTGATTCAAGGTGCTT 9270 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 9204 36 100.0 30 .................................... TGTTATCCCCGGAGTACCTTTTATCCGTTG 9138 36 100.0 30 .................................... CCGGTTTGCCGGCTTTTGCGTGTTCGGTTT 9072 36 100.0 30 .................................... TTGCGCATGATGGCAACGATAATTACCATC 9006 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 8940 36 100.0 30 .................................... TCATACCCAAATCATCGGCATCCTGTTGGT 8874 36 100.0 30 .................................... CGGCATAGGTTACAAATGTCAGACCTGTTG 8808 36 100.0 30 .................................... ACCTGTTCCGTCCTTTGCTGTTCGTCCTTA 8742 36 100.0 30 .................................... TTCTTAAACTCTACATTGACGGTTTCAGAC 8676 36 100.0 30 .................................... TGACCGGCACGCCTTAATCCAACAAAAAAT 8610 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 1759-1590 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAGD01000158.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22466, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1758 29 96.6 39 .............T............... CCTTGGGATAACAGCAATATTCAAAGGTTATAAAAGACC 1690 29 96.6 43 .........................T... ACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATGC 1618 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================== ================== 3 29 97.7 42 CGTCATTCCCGCGCAGGCGGGAATCCAGA # Left flank : GGTTCGTGGGAATGACGCGGTGCAGGTTTCCGTGCGGATGGAT # Right flank : CTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAACCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGGGGGGGGGCGCAAGCGCAAACGCAAACGTATTCATACGCTCTTGTAATGAACGGACAACAGCTGCCTGAGGTAAAGTGGGGGAATTCATATAATCAATTGACGCACAAAAACAATACCCGCCAAGCTACCTTTCATTCATATTTTCAGGGAGCTAGAAAAAAAACTACTTTCTCATTCAATAATACCGATGAAGTTGTTGCTCAAAAAGGCGATACTGTCGTTTTCGGCGCGGCGACCT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCATTCCCGCGCAGGCGGGAATCCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.30,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA //