Array 1 493313-495165 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWFT01000001.1 Bifidobacterium breve MCC 1340 M1340_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 493313 33 100.0 35 ................................. TCAGTCCCATAGTACATCCAGCACGGAATGGCAAC 493381 33 100.0 35 ................................. GCCACAATCTCGATACCCTCCAATGCGACTTGAGC 493449 33 100.0 36 ................................. CTGTGTCGCGCGGTCTCGGTTTGGTTTCCGCGACGG 493518 33 100.0 33 ................................. AAATTTGATTGCGTTGTGACATTCGGGCCTGCC 493584 33 100.0 34 ................................. GATAACAAGGGGTAGTGATGACCGCAACCAACCA 493651 33 100.0 35 ................................. CCAGATGATATGAGGGCGGCGCGGGCTGGTACTTG 493719 33 100.0 33 ................................. GTGTACAAGGCGGTTGCGGTAATCGGGATAGTG 493785 33 100.0 34 ................................. TGCTCGCCCGAAGTCAAGTCGGCGCTTGACGTGC 493852 33 100.0 34 ................................. ACCGATTCCGTGGCGCAAATGGTCGAAAACGGCG 493919 33 100.0 35 ................................. ATCCGGCCGGGAAGCCTGGAACCGTACGATCCGGC 493987 33 100.0 35 ................................. CTCGGTCGCGGGGAGCACGGTGTCGTCATGCCTTC 494055 33 100.0 34 ................................. AACCTATCCAACGGCATCATGGGAGTGCTGGTCA 494122 33 100.0 33 ................................. TCCATAGTTATGGCAGTTGCTGAAAATTGTATC 494188 33 100.0 36 ................................. ATCCAGCGCGTCGAATACGTCAACGCTCATTGCACG 494257 33 100.0 34 ................................. AACAACAAGGCCACGCATGAGGAACACAGCGCCG 494324 33 100.0 33 ................................. CTCGTACAATGGCCGTTTCTCGCAAGAGGGACG 494390 33 100.0 36 ................................. CCAGGCGGGCCCGGACGCCACAACGCAATCAAATTT 494459 33 97.0 34 .........T....................... CTGAATCAGGCTCATGGCGCTCTGACTGCGCCCG 494526 33 100.0 34 ................................. TGGACTATCGGCACCAATACATCCACGAGGCCGG 494593 33 100.0 34 ................................. ATCTGCGGGAAAATGCTCACATGAGCGGAACCCA 494660 33 100.0 33 ................................. GGCATGGGTGAAATACGCGCAGAACACGCAAAT 494726 33 100.0 33 ................................. ATAGAGATTGTTGATTAGCCGCCATATGACGGC 494792 33 100.0 34 ................................. AGCTGGTCGGGCATGAGCCTGCGCGGCATCGCCA 494859 33 100.0 33 ................................. TGCAGATCGAACCCGTTGTACGTGCGCTCGTGG 494925 33 100.0 34 ................................. TCCGTTCCGGTCATCGCCAGCTTGTCCGCGATCA 494992 33 100.0 35 ................................. AACGACCTCGACACCGGCAAGGTCTACTACTGGAA 495060 33 100.0 34 ................................. CCGTTGTACCGTGGGTTGGGGTCGCGTGGACCGT 495127 33 97.0 0 .........................T....... | TGT,T,TC [495151,495155,495160] ========== ====== ====== ====== ================================= ==================================== ================== 28 33 99.8 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCTGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTATCATTAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //