Array 1 145139-144332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLST010000014.1 Pseudomonas aeruginosa strain S17 NODE_14_length_164858_cov_236.304, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 145138 27 100.0 33 ........................... TTTCGAGGTGATGCGGGCACGAATGCTCTACAC 145078 27 100.0 33 ........................... TAGTCACGGGCGAGGCCGCCATCGGCACAATCC 145018 27 100.0 34 ........................... TCATACCCATGGGGGCGCCGGGGTGGCCGCTGTT 144957 27 100.0 33 ........................... TAAGTCGGTCGATCAGGTGACTAATCTGCCCAG 144897 27 100.0 33 ........................... TGTGCTGAGCCAGCCAACCGATCTGCTGCTGCC 144837 27 100.0 34 ........................... TAGGAAGATGCCACTGCGCTGGCTGCCTTGGGTG 144776 27 100.0 33 ........................... GAGGCTGGCTGCCAAGGGCAAAGCTATCCATTC 144716 27 100.0 33 ........................... GTGCGATAGTCAGCGCACTGACGATTGCAAGCA 144656 27 92.6 31 ...........C.............G. CTGCGGAATCGTTGAAGACGGCTGCGAAACT 144598 27 85.2 33 .......A....A.G..C......... GTACGATCTCGGGAATTTGCGTATCTGGGATAC 144538 27 85.2 32 A...........C....C.....A... AACCAGTGGGGCATCGTCATCGGACGGCTTTT T [144514] 144478 27 88.9 33 ..A.........C...........T.. GCATAAGCAGGAAATGGGAGGTGAGCCCTGTTT 144418 27 74.1 33 ..A........C.....C..T...GGA AATAATCGACCGATCTAGGGGCAGACGGGCTAG 144358 27 85.2 0 .......C.T.......C..T...... | ========== ====== ====== ====== =========================== ================================== ================== 14 27 93.7 33 GTGTGCCGCCGTGTAGGTGGCTTGAAG # Left flank : TCAAAGACGCTTGCGTCATGCCGACAGCTTTTCGCAGTGCCGCGCTCGGCGACGACAGGGCCGAATTTAGGGCCAAGTGCATTGCTGTCTTCGATAAATACCGGGTTTTGGAAACCATGATCGAAACAATTAAGGACGCTTGTGATTGTCATCGCCGTTGATGAGAGCCAAAAGCGTTCGCTGAGGAGATCCAGGCGAGTGTTATCCAAATGGCTCAGCCAAATAGGCTCTCGCACATGGACTGGGAGCCTAAGCCAAGAGGGTATCCAGCAGATGCGCAGCGAGCTTGCAAAGGCAGCGAGTAAAACCAGTGCTGTGGCCGTTTTTGCTGTGCGATCAGGGCGCAGAATGACTCTTTTGTTCTTCTGTGGTGCTCGAACCGATTGGGATGAAAATGGCTGGTTTTCTCATAAATCTATCAGCGCAAAATGCCTCATTGATAGTGACTATTTATTGAAGCAAGTGATTGAAAAATAGAAAGTAATCGCGGATTTATAACA # Right flank : GCGTATGTTTCGAGTAGCCCAATAAGCTCGAGTCAGCGCCGTTTTTTGGGGTTCAACAGTGTTGCGCGATAAGCCTCGCCCTTCAGGGCAGTGAGGATGTCAACGATACAAAGAATTACTGACCAATAAACACCGCTTCAACTGCCGCCAAGGCTTGGCGCGCGCCTTCAAGCTCCGGCTGAATCAGTTTTAACCCTCCCAGATCGTTGTTCATTACCGACACGCAATCTTGAAGCGCTTTTTGGGCTTCAGCGAGAGCAGCCAGCAGAGCTTCGTTTTTGCGATCCACAGCCGCTGGCGCTCCGTCTACTACGCTGAGGCGCTTGCTGAGAACGAAGTAGATGTGCGGGAACACCAACTCTGAGACAACGCCCGCGTTCTTCGCTGTTTTTGCTGACGCCTCTTCAACGATAGAGATCAGTTCTGCCTTGTGGATCGGGTTGAATAGCTGCATGTGGTGGCTCCCAGTGATTAATGCTCCCAGGATGCCGACCATCCCC # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCGCCGTGTAGGTGGCTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 36340-37627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLST010000038.1 Pseudomonas aeruginosa strain S17 NODE_38_length_49097_cov_121.076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36340 28 100.0 32 ............................ TGAAGGCCATCAAGACCAAGGCGAGCAAGAAA 36400 28 100.0 32 ............................ ATCGACGCTGCCCTGGGCCGACTGGTCGAGCC 36460 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36520 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 36580 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 36640 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 36700 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 36760 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 36820 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 36880 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 36940 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 37000 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37060 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37120 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37180 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37240 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37300 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37360 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37420 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37480 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37540 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37600 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48100-46152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLST010000038.1 Pseudomonas aeruginosa strain S17 NODE_38_length_49097_cov_121.076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48099 28 100.0 32 ............................ GGCAACGACCGCTTCGACCGGCCGAGGTACTT 48039 28 100.0 32 ............................ ATTTGCGAATCACATTCGGAGGAAGTACCCGA 47979 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 47919 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 47859 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 47799 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 47739 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 47679 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 47619 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 47559 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 47499 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 47439 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 47379 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 47319 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 47259 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 47199 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 47139 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 47079 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47019 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 46959 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 46899 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 46839 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 46779 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 46719 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 46659 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 46599 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 46539 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46479 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46419 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46359 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46299 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46239 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46179 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //