Array 1 1106-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_AABUZP020000026.1 Campylobacter fetus strain D7037 NODE_10_length_10048_cov_142.835_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1105 30 100.0 35 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT 1040 30 100.0 36 .............................. AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT 974 30 100.0 37 .............................. CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC 907 30 100.0 34 .............................. GAAGCTAAATGACCATTAACAATAAACATATAAA 843 30 100.0 36 .............................. AATTCTCCTGTGCAGTCCAATACACTTCCTTTATCT 777 30 100.0 37 .............................. CACAATCCTTGCAAAACGCATAATTCAGCCCAAGCCC 710 30 100.0 36 .............................. AATGATACGTCTTTAGCACTTAGCAAATTCGGTGCT 644 30 100.0 35 .............................. AATTGCAAATTTAATCCAAGGTAGTCTAATCTCTA 579 30 100.0 34 .............................. TTTTAGCCCCTTACGTAGTCTACTACCTTACCGG 515 30 100.0 36 .............................. GAACCAGAAAAAAAAGTCAAGGCGGAGAGTGGGTTA 449 30 100.0 35 .............................. CAAAATAAAAAAGAAGGAAAAGCTAAATTTAAAAG 384 30 100.0 35 .............................. TCTGGTATTAGCACGTAACCATCTTTTTGTACGTC 319 30 100.0 36 .............................. TATCTTGCAGCTAGCAATATTCTTATTATATTTATC 253 30 100.0 37 .............................. AGAAGTGTTTTAAACGGGCTTGTATCCCGAATTAGCT 186 30 100.0 35 .............................. TTTCCGTCCATATCCCTGATAGTTCTAGGTCTTGT 121 30 100.0 36 .............................. CGTCTTTTAGCTCTACTGGCGGTTTGTGGTTTGCTA 55 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AACTCCTGCAAATTTTATTAAATTTAAATCCGCGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CTTTGTTTTAGATATTACAGTTATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1173-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_AABUZP020000031.1 Campylobacter fetus strain D7037 NODE_28_length_1197_cov_159.7_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1172 30 100.0 36 .............................. CAAGTGCATAAATGTAGTCTTCGCCGTGTTTTGTTT 1106 30 100.0 35 .............................. TCTTTAACCTTTTACAAAGCTCACAACAACTTTTT 1041 30 100.0 36 .............................. AGCCCAGCTTCTAGTGGCTTAAAATCAGGTTCTTTA 975 30 100.0 36 .............................. ATAGGATACTTCCAGCCATACAAAGAACTATAAACG 909 30 100.0 35 .............................. TTTATCATAACGCCACTCATTTGCCACCGCCAAAC 844 30 100.0 35 .............................. ATGTGTTTTTTTATGTTTTTTGGGGTTTTCCCAAG 779 30 100.0 36 .............................. GAAATTAGATCCGGCCTGTAAACTCCGATTAAATTC 713 30 100.0 36 .............................. ATATCCAGTCTTTGGCTAAAAGTATTTTAACTAGGC 647 30 100.0 35 .............................. AATTTAGACGACGCTCTAAATCAAGCCGCTAAAAA 582 30 100.0 37 .............................. AGCATTAGAAAAGGTAAAACAGCTAAAAGAGCAAGCT 515 30 100.0 35 .............................. AATTTAGACGACGCTCTAAATCAAGCCGCTAAAAA 450 30 100.0 36 .............................. AACAACATCTTTGAGCAACGCTTTTAGGCAGATGGG 384 30 100.0 37 .............................. AAAACATAAATTGGCTAATTGTAAAACTAAAAAATGT 317 30 100.0 36 .............................. TATAAATAACTAATTTTCAAAAACAAAAATATATCT 251 30 100.0 36 .............................. ACAAAAATATTTTTTTCTCCAGCAAAAAAAGCAAAT 185 30 100.0 35 .............................. TCCTGTTTTAGAGCTTATTTACGCTATCCAGACCT 120 30 100.0 35 .............................. TTTTCTGGTTCTGATAGCGTTGTACTTTATTGCAC 55 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : TATTACAGTTATAGGGCTATTTAT # Right flank : CGGGATAGTGATTCGCGGAGTTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 44632-44988 **** Predicted by CRISPRDetect 2.4 *** >NZ_AABUZP020000050.1 Campylobacter fetus strain D7037 NODE_6_length_47975_cov_124.822_ID_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 44632 30 100.0 35 .............................. TTTGTTTTAGATATTACAGTTATAGGGCTATTTAT 44697 30 100.0 36 .............................. AGAATTATATTTTATTACACAAGATTTAAGCCTTGT 44763 30 100.0 35 .............................. ACAACAGCACTTGGCTCTTGCCAAAACGATATACT 44828 30 100.0 35 .............................. TCTCTTGCGTACCCTGCAAAGAACATAGCGTCTCC 44893 30 100.0 36 .............................. CGAATGAAGTAGCAAATAAAATATCAAAAGACTTGC 44959 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATATAATTTTTTGTATAATCCAACTTCTATTTTATAGTTATTTATTACTCTAAGCCTAAATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGGGGTTTTGTATATAACCCAACTCAATTTTAATGTTAGTTTTAATTTATAGCAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATACTGCATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTCTCATTATTTATAGCTATATTATATATATAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTTAATTGCTTTTTTAAATTTACTTAGATGATGAGTTTATTATA # Right flank : CAAGAGCAAACATGGCAGAGACCTTAAAAGAGAAGTTTAAAGGCGTACTAAGTGCAAATACTAGCTATTTTGAAGGAGTGAGCGATCATATTATAAGCCAAATGCAAAATATCGCAAGAGTAAATCAAGCTAGCAAATATGGCGTAAAACACTACAAAGTGGTAGCTAGGATTGATAACCGCACAAGTGATATCTGTAGAAGTATGAATGGACGTATAATCCCAGCCTCGCATATAGAAACTCAAAGCAACAATATCCAAAACGCTAAAGATATAAACGAGAAAAAAGCAGCTGCTATTTGGAGAAATGAGCCTTTTTTTGGTAAAATACTCCCTAGTAACTTCGGGCTTCCACCATATCATTTTCGTTGTAGAACCGAGCTAGTACCGGTGTGGATAAATGAAGAAGAGATCGATGGAGTAAAGATGAAAAATACAAGCCCGCTTAGCAAAGATGAAGTAGTAAAGCATATAGATAAAACAGGCGTGGAAAGAGTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //