Array 1 619436-620122 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDD01000002.1 Laceyella sacchari strain DSM 43356 Ga0244645_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 619436 36 100.0 37 .................................... TAACTAATGTTACTATGCTTTTCCCCTGATCTCCTTC 619509 36 100.0 38 .................................... GTGGCAAAGGCCGGAGCTACAAACATATTTCACCAGAT 619583 36 100.0 37 .................................... TCTTTCTTCCGTTTCGTCCATACACTTCATCAAGTTG 619656 36 100.0 26 .................................... TTGGCGGGGCGAATCGATGTCATCAC Deletion [619718] 619718 36 100.0 38 .................................... AAGAAGGCCCGGTTAGGGCTTACGACCACAAAAGCGAA 619792 36 100.0 36 .................................... CGATGCCAGGCGCTACGGAGATGATTGGGGATCGGA 619864 36 100.0 35 .................................... GACTCCTTAGTGAAACCATCAGAAGATTCTCCGAT 619935 36 100.0 42 .................................... GCTGTAACCAAGGATAACCACGTAGCATCTGGATTGATTCAC 620013 36 100.0 38 .................................... GATGCCCTCTGTCAACTCAGTTGTAGGCTCAGGACTGG 620087 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 100.0 36 CTTTAAGTGATTAGATGAATTAAATGTGATTAGCAC # Left flank : AATTTCAGGATCAAATCATGTTGGTACACATTGGTCCTGTTACTTCAGAACAATTGGAAAAACGAATTTCAACAATTGGACGAAAATATATTGCAATGAATTTGAAAAACCTTGTGTACTAGCATTTGATTGTATTTTCTAAATGTGGTAACATTAAATTTGCCTAAAGGGCAAAGAATACTGTGCGTGTGCTAAGGATGGAAAAAATCCATTCAACCACAGGATTACATTATTTATCTAATCACTTAAATAAGAAGGTCTTGCATTATGCAAGGTCTTTTTATTTGAATAGAAGAAAGTGCTTAGAAGTAAAATAAGCTTGCGAGCGCCTAGTGATGACAAAAAAGGCTTATGATCCTCGTAACCCTTTAGTATCAAGATGTGTTCCAACACATTGGTCTATTTTATTAACATATAGATTCATAAAAAGTGTGTTCTAGAGGAAGTGCTCGAATTTGCAAGTGAAACTGCACGTAAGACAAAGGTTTTTAAGGAATACT # Right flank : CATATTTGACTGGCTCCCTCTTCCACGAGTTGAAAGAAACTACTTTAAGTGATTAGATGAATTTTTCGTTTAGTTTCTACCCCTACTGAACGCGTTGCCGCTTATAGTCACTGGATAGACACAAATGATAGCTCCTTGGAGTCATGTGGGTGTTTTGGATACCGCTTTATAATCGAGTAGGCATTCCTGCATGATTGAGAAGACAGGAGGAGAATCAGTGTCTACCACAGTTCACAAACCTCAGCGGTTGACGCAGTTGATTTGGCGTTGGCATTTTTATGCGGGGATTATTTTCGCCCCGTTTATTGTGATGTTATCTATTACCGGCGCGGTGTATTTGTTTAAGCCGCAATTGGAGGATTGGCTTTATCGGGATGATTACTATATTCAGGAACCTCAGAAGCAAAACGGCAAGTTGACGCCATCCATGCAGGTGGAGGCGGTGCGTAAGGTATACCCCAATGGACAAATCACGAGCTATCGGCCAAGTGATGAGCCGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGTGATTAGATGAATTAAATGTGATTAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 404323-404750 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDD01000001.1 Laceyella sacchari strain DSM 43356 Ga0244645_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 404323 30 100.0 35 .............................. CCGATCAGCAACACGATCCAAGCGGCAACGAAAGG 404388 30 100.0 36 .............................. TTCTCAAGAAGAAACGCAACTAAAACTAGACCTAGA 404454 30 100.0 36 .............................. ATACAAATGAATTCCGGAAGATACCACTCCACCGTC 404520 30 100.0 37 .............................. TGTATCTTGCAAGTGACAGACGTTCGGCTTTCTTGCC 404587 30 93.3 37 ...A.....A.................... TTGTTCTTTTCTGATAGCGAAGATGCGGCGATAATGC 404654 30 93.3 37 .........A..T................. AGCTCATCATTATCTGGATCACTTTTGTCCCCGAACG 404721 30 76.7 0 ........AA.T.....A.T.....A...C | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 94.8 36 GTTTAGTTGGAACCATAGTGGTATTGAAAT # Left flank : CATACCACTTCGTATCAATTTTACTAGGAACCTTAAGTCCATTTGGTACAGAAGCACCATCTAATACCCAATAAACATTCTGAAAAGAACTCACTAAATCTTCATTTTTGTTTTTGTCTGGGTTTGGATTTGAAATTGAGTGTAAACGGATATTTGTCATGTTTTCGCTCCTTGTCGTCTTTGTAATATTTCTTTTATAGGATATACCTTTGTTTGCTCACTTAGAAACTGTCTATTTATTTGTTTAGATAAGGCCTTGGATAACCCTTTTTATATACAATGTATTGTTAAAGAGGGAATGAAGCGGCGGCCTTTTCCCGTAGAGCGTCGATGCACAAGTGGAGCAATGAGAAAATGGTTATGGAGTCGCAGCTCCGAGACGCTTTCACTCGCTAAAAAGTCTGTGAACCTCCCGGGGTTTTTGCATTATCAGAGGTTCACAGACATTTTCGGCTTTTGCTATAATGAAAGTGCTTGAGATGACTGGCGTTCACATACGG # Right flank : CTTTCCTGTTCCCTGACCACTTACATCGCACCACGCATCAATAGATGATCCCAAGAAGAAGATCCTCCCAGCGAGCTTTGCAAAATAAATCCAACCATAAATATCTGAATTGTTATACGATAAGGAGAGGGATTTTAGCCGGCGGGGTTTCTCACTGTATACAGTCAGACATTAACCGCTCATCCCTCCACAGGCGGATGGTTTAACCCATTTGCTTGACAACCATCTATTACTATTTTATGCTAACTTACATTAAGTAATTTAATTGAATTTTTTATGTCCTATATCCATTTGAGAAAGGATGTATCACATGCGTTTGAATACAGCAGTGAGTGTGTTGATTTTGAGGATTGTGCTCGGTGTGACGTTTCTGGTGCACGGGATTATGAAGTTTACCATGGGCTTGGATGCCGTGGCAGGGATGTTTGCAGGGATGGGGCTTCCCGGGTTCCTGGGGTACGCGGTGTCCGTGATTGAGTTGGTGGGCGGCGCGGCGATGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGGAACCATAGTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 946991-947511 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDD01000001.1 Laceyella sacchari strain DSM 43356 Ga0244645_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 946991 26 100.0 39 .......................... GGGAGCCAAGCGGGTGTTTGTGGTGCAGGAGGCCGGTTT 947056 26 100.0 38 .......................... GCGTACTCCCAACGAGTAAACAGACGGCATCCCCGTTT 947120 26 100.0 39 .......................... AAAGGAGTGGAAAAATGGAATTCTAAGGAGCATGCGTTT 947185 26 100.0 39 .......................... AAAGGAGTGGAAAAATGGAATTCTAAGGAGCATGCGTTT 947250 26 100.0 14 .......................... TTNNNNNNGCGTTT Deletion [947290] 947290 26 100.0 39 .......................... AAAGGAGTGGAAAAATGGAATTCTAAGGAGCATGCGTTT 947355 26 100.0 39 .......................... TTAATCAGCTGTTTAAACGTTTCGGGTTGAGCTACGTTT 947420 26 96.2 41 ............T............. GATCTAAGATTTGGTGCACCTCATCTACCAAAACCTGTTTT 947487 25 84.6 0 .....A.T...........-.C.... | ========== ====== ====== ====== ========================== ========================================= ================== 9 26 97.9 36 AGTTGTAACCATAGTGGTATTGAAAT # Left flank : TTATTTAGTTTTTCGCTATACCATTTTCAGGTTTGTATAAGTGCCACGGGAGTGTGTACCAAATCTCAAGGAGTTGACGGATGGGATGAGCAAACAACGTTCAAAACAAAAAGTGATTGAGCTGGAAGATGTCATTTTGATTATCAATGGCAGTCCCACACCGGCTGCCTGTGAAAACTTTGTCAGGATGGTAAACCAGATGAAAATATCTCAAAAGAATGCTGCTATACGTTGCAAATGACTTTCTCTTCACTTGGATTGTCTACCGGAACGAGATGAGAATGGTAAGCTATGGGCTTGTATGTCCAGTTGATGTTGGAAGCAAAGATATGCTAAAAAGTAGTGAGGGCGAAAAGGATATTGGAGATGTACCATATCCTTTAGTGAGCTAAAAAGTCTGTGAACCTCCCGGGTTTTTTGCATCATTAACGGTTCACAGATTATTTTGGTTTTTGTTATAATGAAAGTGCTTGAAATGACTGATGTTCACATACGGGTTT # Right flank : TGTGTATCATAAACGTTCATTTTTGTTACACGATTACACCATCTCATGTGATCATTTTTTACTATTTCCCACTTGACAATATTGTTATCATGAGATGATCACCGTCAAAGGAGAAAATATAATGACTAAAATCTATAAACAAATCCCATCCGCTGCACTCCAGTATCTTCAATACGCCATTCATGAGCACCGCGAGCAACTGATAACCCAATTCGACCGCTACATTAACACCTTTGAAGGTGAGTTGGAAATGATGCGCCAGACGCTTGTTAGTCAGTGGTCTAACCTTATGACAGTTTATGCATATTTCGCTCAGGAAGATCCGCTCGCAAGCTTTGCGCTCCGACAAGAAATCGACCAAGTAACTGAACTGCTTAAAAGTGATAACAAATTGCGTCCGCTGATTGAAAAAGAAGAAGCTCTTTTTGATGAGTTAAAGAAAATCGCCGCCCAATGAGTCGGTTTTTTTGCTCGTAGAAAAAGTGCCGTCCAGTAGCACC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.27, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGTAACCATAGTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.23%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 948435-948800 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDD01000001.1 Laceyella sacchari strain DSM 43356 Ga0244645_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 948435 30 100.0 38 .............................. TGCAGTGGGGAAAAAGTCCGCTAAGCTCATTGAAGACA 948503 30 100.0 36 .............................. TAACTACTCCAACAGTGAGGAACAAGACAAAACATT 948569 30 100.0 38 .............................. TAGCCACCCCAGGAGTGAAAGGCTGTCAAGGGATTAGA 948637 30 100.0 37 .............................. TATCACTGGCCGGAAAACTCCTATATATCAAACCCGT 948704 30 93.3 36 .................AA........... GTTCAAGTTGGAACGAATCAGCCGTTTGAGTCACGG 948770 30 90.0 0 C................A...........T | T [948793] ========== ====== ====== ====== ============================== ====================================== ================== 6 30 97.2 37 GGTTTAGTTGTAACCATGGTGGTATTGAAA # Left flank : TTTGATGAGTTAAAGAAAATCGCCGCCCAATGAGTCGGTTTTTTTGCTCGTAGAAAAAGTGCCGTCCAGTAGCACCGGTGCCTTTTTAGGGATAGTGTGAAGATAAGGAATCGACGAAGCTTTAGTTGAATCCATAGTGGTATCGAAAGGATAACAAGGAATATCACAAGGAAAAATGGTGCTCATCCAATCAGCCAACTTAGAGTCCTGGGATAGCCAAAGGAGAACCTAACTCCAGTATCCCTGATCGTGATTGTATCGATTTTAAAGCGCAAAAGGAATCGCAAGCCTTTTTTGATCAGTTCGTGCCTAATAATCCCCATGGTTTAGATCGCGATGAAGGAGGAATAGTTTGTGAGAGTTTGCCGTAATTGGGTCTATCCTTTAGTGAGCTAAAAAGTCTGTGAACCTCCCAGGGTTTTCGCATCATTAACGGTTCACAGATTATTTTGGTTTTTGTTATAATGAAAATGCTTGAAATGCCTGATGTTCACAAACGG # Right flank : TGGTTGTATTAATGAGGAAATCGCATGCATAACATAGCAATGGTTTGCATTAGGATTTTGTATTGCACTGCGCTCGTTGGTACTACATGCGTTTCTAACTTACTTGGTGGTGATTGCCAGAATCAAATAGTAGGTAAGGATGAGCGGATGATTTAAATTGAATATTAAGAATATTTTGAATATAATTAGGTGTATAACCGCATCATTCTTGATAGTAGGGGGGATCATATGCCAAAATGCCTTGCATGTGGAGAAAAGGAAAACATCGAAGAAACACACTCCGGTAACTATGGTTGTAAGGAGTGCGGCGAGACGTTCGATAAAAACGGCAACCCCTATAAACATTAATGGTGGTACAATGGGATTACCTATAAGGGTAGTCCCTATTTTCAAAGGTGGGAAGAGTAATGGACAATAAAATGATGGTAGATCATGAGGCTTTTCTTAAAGGGATAAAACCAGCCTTGTATCGGGCCTACAATCAAGGTTTGGCGGAGTTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAGTTGTAACCATGGTGGTATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 951680-952172 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDD01000001.1 Laceyella sacchari strain DSM 43356 Ga0244645_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 951680 30 100.0 36 .............................. GCACAAAATGCAAACCAAGCTGTTTCTAATGTAAAT 951746 30 100.0 37 .............................. CCGGTTTTCGTTAACCGCCAGTAGAGTTGCTAAAATA 951813 30 100.0 32 .............................. TACCTCGGACTTACCCCTATATTCGCTCTAAA 951875 30 100.0 36 .............................. CCACTTGTGTCTGCGCGTTTGGGAAGGCAATCTTAA 951941 30 93.3 36 ................CG............ GGTCATCGCCGGAACAATCATTGGCTTATCGTTTGG 952007 30 93.3 36 ................CT............ TACTCTTGATCATGAAAGGCGTCCTGGCATACCAGT 952073 30 90.0 39 ................AG...........G TTGTAAGCGCCCTTATCTGTCTTGTCCACTCCTTCACCG 952142 30 73.3 0 T........A.T....GT..A....AG... | A [952157] ========== ====== ====== ====== ============================== ======================================= ================== 8 30 93.7 36 GTTTAGTTGTAACCATTATGGTATTGAAAT # Left flank : TATGGCTGGCCATTTATTTAGCAGTTCAATAGGGGTAATTTCATGCGTCTACCGCTGGATATCTCTGTTTCAAACTCTACATACCTATCTTGCTTATGTGTCTTGAGATAACAATTGAGAATATCTGTAGAAAAAGGATTCTGGCCGGTGCGGAGTATGGGGCTGGAAGTGGAGTATTGTTTGATGTGGTTTAAAAAAGTTCCAGTTAAATGAGGGTGTATCTGAAGATCAGATACATTTACTAATTAGGGAGCAAATTGAAGACAAAGTAAGGTGTTTAGTTATAGAGTTGTTAAAGACTTACATTGTCAAGGCAATATCATCAATGAGCAGAGACAGATCTGGTAAGGGTGTACCTAACTTATCGTAGGTCTACAATATCCTTTAGTGTACTAAAAAGTCTGTGAACCTCCTAGGTTTTTTGCATCATTAACGGTTCACAGATTATTTTGGCTTTTGTTATAATGAAAATGCCTGAAATGACTGATGTTCACATACGG # Right flank : TGGTTGTATGAATGAGAAAACCGTACAAAACATAACAACGGTTTGCATTAAGATTGTGTGTTGCCCAACACGACGATGACAAGTGCAATTGATACAAGTATTGCATTGCGGCGCTCGTTGGTACTACATGCGTTGCTGACTTACTTGGTGGTGATTGCCAGAATCAAATAATTGGTAAGGATGAGTGGATGATTTGAATCGAATATTAAGAATATTTAATATATAATTGGAAGCGTAACTAAATCATTTTTTGATAGTAGGGGGGATCATATGCCAAGATGTCCTGCATGTGGAGAAAAGGAAAACATCGAAGAAACACATTCTGGTAACTATGGTTGCAAGGAATGCGGCGAGACGTTTGATAAAAACGGCAACCCCTATAAACATTAATGGTGGTAAAATGGGATTACCTATAAAGGTAGTCCCAATTTTCAAAGGTGGGAAGAGCAATGGACAAAAAAATGATGGTAGATCATGAGGCTTTTCTTAAAGGGATAAAA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:0, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTAACCATTATGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 5 953361-953990 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDD01000001.1 Laceyella sacchari strain DSM 43356 Ga0244645_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 953361 31 100.0 36 ............................... TCGTTTCACTGAATATGGATACTTACCACCAGGCAC 953428 31 100.0 35 ............................... TAGCAAAATCAAATCGGTGGAAAGCGCAGCCCGGA 953494 31 96.8 36 A.............................. ATACAATTTTTTAAGCCTTAAACCCACGCCCGTTTC 953561 31 100.0 38 ............................... GGCTAACCAAGCGGAAGCGCCAGATGAACTGGGCGCTT 953630 31 100.0 35 ............................... CTTATCGCCGTCATACTGAACAGAAACAGTACCCG 953696 31 100.0 37 ............................... GAGGAGACAGGGGATTGGTTATAAGTATTATGAAGAA 953764 31 100.0 35 ............................... ATACTTTTTCAAAACATGAGCACGGGTCTTCTCGA 953830 31 100.0 34 ............................... AAACGAAGCTGCTGGCCCATTTACCACCTTTGGG 953895 31 96.8 34 ..............................G GTTGTAGGTCTGTGATGTCCAATCAGCATATCTA 953960 31 87.1 0 T.........C.......C...........G | ========== ====== ====== ====== =============================== ====================================== ================== 10 31 98.1 36 GGTTTAGTTGTAACCATATTGGTATTGAAAT # Left flank : CTCCTGGGTTATCCACCAAAAGCGGTTGATTTTTATGTTAGGAAGTGTACGGATCGTTCATTATCTGAGGTCAGCATTGGGCTGGGCTATTCTGGTGTTCGGTGTGTATGTGATGTTCGGGAGTTGATTGAGAATACCATATGGTTGTGGGATACATACCAATTAGATGAAGAGCTGCGTTTGATGGTAGAAGGAGAATTCATTTATGTTTCGTATCGAAAAATGGAAGAGCTAAAAAAAGTACAAGCTTCGATCCTTCAACGCATTGCTGTTTCTGTATAAATAATTAGGACTTCGGAGAGTTTGTCTACTCGAGTTGAAGTCAATTAAAAGGATTTTTAGAAGAGAAGTAAGGGGTAATTGTATCAGAGGTCTACAATATCCTTTAGTGAGCTAAAAAGTCTGTGAACCTCCCGGGGTTTTTGCATTATGACCGGTTCACAGATTATTTTGGTTTTTGATATAATGAAAATGCTTGAAATGACTGATGTTCACATACG # Right flank : GATGGAGGTGGCACTTGAGTGTAAGCTGGATGACCTATATATCGTGTCAAAGAATAAAAAGCCGTCCGCATAGGATGGCTTTTAAATCGTTTTACAGGGGGCTAGAAGGCCCGTAGAGCGGCGGAAAATTGTTTCGAGTATCCTATTTCAATTTTAAGTTTTTATACGCCAAAAGTTTTCACAAGCAAGGGCCTTATATAACCGTCGAACAATCTTAACTTCCAACGAAAGAGGGATTGTTCGTGTACATCACATGGGAGCAACTTGGCGTTATCGTGGCACATCATTACCTTTTTCCGGATAAGCAAATACAGCTTTCAAGCTATACAGTTCTCGCTTGCGGTCTCGGTGCCTCTACGTCTCGGCTCATGCTCTGTTGATTTCATTTATTGCCACTATGTGTTTACATGGAAACAGGCATCCCGCTGCAACCGCTCTAGCATCCTCTCCACATCCGCAGCACGGAATGACCGCTGCCTGTCGTTGTGTCCAGCACTGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAGTTGTAACCATATTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 6 957088-957446 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDD01000001.1 Laceyella sacchari strain DSM 43356 Ga0244645_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 957088 30 100.0 37 .............................. AGTTCATCTGTCTACATGACGTCGAGCAACTCAAAGA 957155 30 100.0 35 .............................. ATGAGCAAACAAGAACGGGAACAACATAGAAAAGC 957220 30 100.0 35 .............................. TTCACAAAAAAACACCCCTTAAGGAGATGATGATG 957285 30 100.0 34 .............................. GATATGGTGACAATCCAGAAAATGTCCCTAATAA 957349 30 93.3 38 ............T....G............ GCATGTTGGCTCGCCCATACTCATGATAAAAACAAGGG 957417 30 80.0 0 T........A.T.....G.......AG... | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 95.5 36 GTTTAGTTGTAACCATATTGGTATTGAAAT # Left flank : GATTATATTTGGCTCTGACGAGTGCCGGATACCGTGTAAAAACCCATATCCTCTTTGGGGACTTGGAAGTGGATTTGTATATTCCAAAATACAAACTGGTGATTGAAGCGGATGGGAAGGCATATCACAGCACACCAGCACAAAAAGAGCGGGATCGTAAAAAGGAATATGTATTGAAGAAACATTACAAACTTAAGGTGAAACGATTTAATAGTGATCAAATTAAGAACTGGTTGAATTGGTGCGTGGGAAAGGTTCATGAAGTAACGGGTGGACCAAGAAAAAGTTTGTGGCAACAAGCGGGGGAGGTCATTAGTGGGCTTTATGGATTGTTTAAAGATATAGTTATTCGTAGACTATATCAGACGAGTACAATATACTTTAGTGTGGTAAGAAGTCTGTGAACCTCCCGGGGTTTTTGCATCATTAACGGTTCACAGATTATTTTGGTTTTTGATATAATGAAAATGCTTGAAATGACTGATGTTCACATACGGGGG # Right flank : TGGGTGTATGACCCAAGGCAACAGTAACGTTTCAAACATCACAAGTTGTTGGGGTTGCCTATGCCTTGGGGGAGTTCCTCATTTTCTGGTACATCATTTTGATCCCGACCGTCTTATCCTTGGTCGGGCAAGCATTTGGGAAAAAATGGTTTCAGAAAAGTCTGAGATATTGCGGTATAGGCTTTTTACTCCTGGGGCGATAGTATTCGAAACTGTATGAAAAAATTGATATGATAGGCACGGAGGTGAGACTGTGAGAATCAATATAACTTTTCAGACCCATCACAGGCAAGAGAGAACGCATTTTGGCTGGCTATCCTTACATATGTGGAACCGTTCGTCTTATGGTTTGGCATTATGAAGATGTACTCGTTGTCTCCAACCGGCTTCGGCTCAGTCGCGTTGCTAACAACATTGCTGATTTTCCGTTTCATGTACACCGCCAGGGCATTTACATATCCGCTGGTGTGGGGCGTATTTTTATATGCGTTCACTGATGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTAACCATATTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 7 959878-961054 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDD01000001.1 Laceyella sacchari strain DSM 43356 Ga0244645_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 959878 31 100.0 35 ............................... GACAAATCCGGTTTTACTATTTAAACGGCCTTCGA 959944 31 100.0 35 ............................... TGTTGACTCGACGGAGAAGACGGCACTTGAAATCG 960010 31 100.0 36 ............................... AGTGGAACGCGTTGGGGAGTTATTGAAAAAGATCGC 960077 31 100.0 38 ............................... AAAGAGGCTTGGAATTATGTATTGTTCCAGCGTGACAC 960146 31 100.0 37 ............................... TCGGGTACATGTAAAACTGCTCGAGTACGTCTTTCAT 960214 31 100.0 35 ............................... CTGTCTGGACATTGACCAAAGGGTGATGCCGAGCC 960280 31 100.0 36 ............................... GGCATCAACATCATCGAAAATCATTTCCCGCTTCCG 960347 31 100.0 37 ............................... CTCGCCGCGTCATCATCTTCATCCGCGGCAATTCCCA 960415 31 100.0 37 ............................... GGGAGAAAAGAAAAAACGGGCGAATAGCAAGAAAACC 960483 31 100.0 37 ............................... GGATAAGGTAAAACGTTCTTTAATCCGCGAAGAAATC 960551 31 100.0 37 ............................... GGTATGTGGAGGAGAGTTCGGGTGTGTGGAAAACATG 960619 31 100.0 38 ............................... GTTGATCAAATTGAGGATCAACGGGATAAAATCGCCGA 960688 31 100.0 37 ............................... ATCAAACAAAAGTCAAATCGAAGCGAAAAAGCCCTTG 960756 31 100.0 36 ............................... GATCCCATCTAAACTTAGCAATCACTTTTATTTTTT 960823 31 100.0 35 ............................... TTGACCGCCGTTATGGTCGAAGATTTATACAAGGA 960889 31 100.0 36 ............................... AATTCCGTTATCTCTTCAAACAGAGACGGAATATCC 960956 31 93.5 37 ..................C...........T CCTACCATTTCAGCTAGCTTTGCGGTTTGGCCAAACG 961024 31 80.6 0 .....................AC....TTGA | ========== ====== ====== ====== =============================== ====================================== ================== 18 31 98.6 36 GTTTTAGTTGAATCCATAGTGGTATTGAAAG # Left flank : GTCTGTGAACCTCCCGGGGTTTTTTGCATCATTAACGGTTCACAGATTATATTGGTTTTTGATACAATGAAAATGCTTGAAATGACTGATGTTCACATACTGGTTTAGTTGTAACCAAAGTGGTATTGAAATCGCCCCCCATTGGTTTCCCCACGGGTAGCCCCTCGCGTTTAGTTGTAACCATAGTGGTATTGAAACAAGTCAATGGCATCGCCGTCTTTATATTCGGTTGAAGGTTTAGTTGTAACCATAGTGGTTGTTGAATTGTAATAGCGGGCGTTGAAAAGGAAATTGTACTGATAGACTACTTCGAGTCGAAGTCAATTATAAGGAATCTAAAAAGAAATGAGGGGGATAGATTTAATCAGAGGTCTAAACTATCCTTTAGCATGCTAAAAAGTCTGTGAACCTCCTGGGGTTTTCGCATCATTAACGGTTCACAGACAATTTTGTTTTTTGATATAATGAAAATGCTTGAAATGACTGATGTTCACATACGG # Right flank : AAAATCGATGATCATTTAATATACTTTCAGGAGACCGATACATACATAAATAACCAAACGGCATAAATGTAACAAATGGATGTAAGTTCCCTCTCCTTTTTGGCAACAATGCACCCATAAGGGGTGGACAGTCAATGAGGGAACAACATCCAGAGCAGAAAGTGATCGAGCTGGAAGAGGTTATATTAGTCATAAATGGCAGTCCTACACCGGAAGCCTGTAAGGACTTTGTGAAGCTGGTCCAACAGATGAAAGTAGCTCAAAAGAACAGAAATTAAAAGGTTTCATCATACAATCGGGGTGCGCTTTGCATCCCGATTTTTTTGTTATATGATATGTACATAACAATGCACCGAGAGGAGTTCGCAAATGAGCCAAAGCATTTACGATGTGCACAATGTTGCTATTTATCTGCGTAAATCACGTGGCGATGAAGATGTGGACCTTGCTAAGCACAGGGATGAACTGGTGTCGATGTGCGAAAAGAATGGTTGGTCCTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTGAATCCATAGTGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 8 1126885-1127116 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDD01000001.1 Laceyella sacchari strain DSM 43356 Ga0244645_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1126885 31 100.0 34 ............................... CCGCTTCGCTTTCGACCGCTACCTTTTCAACCGT 1126950 31 100.0 37 ............................... ACGTCATTTTCAAGTTTACGGATCACTTCTCGCTCGA 1127018 31 100.0 35 ............................... ATTGTATGTCATCGGGAAGCTGGCTTTCCCGATGC 1127084 31 90.3 0 ....A........T.......A......... | GG [1127110] ========== ====== ====== ====== =============================== ===================================== ================== 4 31 97.6 36 GGTTTAGTTGTAACCATAGTGGTATTGAAAG # Left flank : AACCTCTACTTGATCAAGTATAAATTGTGCACCACCAGCCATAATCTCTTCCTTCAAATGAACTCCCCCCTTATTATTTTCTAGATAGTGAAAGAGCGAAGCTTAGGAAAATTATGTAGCAGATTGGCGAAATTCTCGTGGCGACAGATATCCGAGCGCAGAGTGAGGTCTTTCATTATTGTAAAAGCCTCTAATGACCAATGTCCAGTTCAGCCTCCAGTTCAATGGAGCCAAACCGTTTTCTAAAGATGGAGAAAATGTCCAAGATGAGAAAAAAGGAATACGGTAGTATCTCAGCTATGTAGCCGACAAATGTTATATCAGGATAATTGGTGTGGTTCTCATCACCGTCGAAGGCGTCAACAACTTCTCACGGTTTGCAAAAGGAGAGCACATAAAGTCTGTGAACCTCCCGGGGTTTTTGCATCATTATCGGTTCACAGATTATTTTGGTTTTTGTTATAATGAAAATGCTTGAAATGACTGATGTTCACATACGG # Right flank : GAGATTTTGGTTTTGGGTGATGCAAAGTTCCGCACTTATACATTTACCGGATTTTAACAATCTCGCTCCTTTGCAACACCATCCGATACCCCTTTTTACATAACGATGGATCTAAATAAATACATAACACAAATTAGCACCCTCGGAAATTTAAGTGCCGAGGGTGTTGCTTTTGTAAATGTGATTAGTTCTATTGGCAAATGTGCCTGTTGATACAAGGGGACAGTGAACGATTTCATCGTACTTCCTAACTCCGAATTAAGTATTCTCTCTTAGGGTGGATAGATTAAGAATGAGCAACATTTTATTTTTGTCAACATTGGGGATGACGAAGTTATGTTTTCATTTTGTTGAAGTAGGCATGGAACCGCTTTACTATATGGACGAGGGAATAATTATTTTATCATTTAAAGTTAGAAAGGAGCTAGGTTATGGGTGAATCTGTGAAACAGGCTGAAAACAACACAAACATTCGTGTCAGCATACAAAAATTTGGTAGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTAGTTGTAACCATAGTGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 9 1139868-1140276 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDD01000001.1 Laceyella sacchari strain DSM 43356 Ga0244645_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 1139868 38 100.0 35 ...................................... TGAGAGTATCCTAGATGACGAAACAGCTACTTTTG 1139941 38 100.0 36 ...................................... AACCTTGGCATATTCTTTTGATATTTTCCGCTTCGC 1140015 38 100.0 35 ...................................... CGTCCCTAATTCCCTCAACTCTTGGAACAAGGACA 1140088 38 97.4 36 A..................................... TCGCCTTCGTTCATCACAGCCCGCTTCACGTATTCG 1140162 38 100.0 39 ...................................... TAGCCAGACGCTGTTGATACGGATTCCCAGTTTTTAAGA 1140239 38 94.7 0 A........A............................ | ========== ====== ====== ====== ====================================== ======================================= ================== 6 38 98.7 36 CGTATCAATGAAATACATCTCAGTTAGAGAATTGAAAC # Left flank : CTTTCAATCACGATGAAACGCTTGAGTATGATATGCTGATTACGTATGAACGCATTCATGCATTAAACTGGGTATGTGGTTTGATAAGTAAATGGGATGACTGAGATAGAAACATTGTACCCAGAAAATGAAAAGGACACCTCAAAATTATAGAGGTGTCCTTAGGAGAAAATTCAATTCAAAGCATCCCCAACGTGAAATATCTGACCTTAACCTTTGGGCATGCGTCATAGTGTGATGGGTTTGATGGTTTTATTTTCTGAATCATTTAGATATAATGAGTAGAGGGTGTAGGTTGTTGGCTTAATAATGCGAACACCCATTGCTTCGGAAAAAAGCCAGGGGGTCGTCGGAAATGCCCAATCCCTTATGAATCAAGGGGTTTGCCATTTGATGCATGTATGATAAAACGGTTTTCTGGTGATAAAAACTTAATTTTTGGAGGAGTGTTCGGAAAAGGGACAGCTAGACATTGATTTTTTACAGGTTTTCGCGAACGC # Right flank : CGGGGTTCCATACCAGTTGCCATTTTTCATGATTTTGAACTATATCAATAAAACACAGAATGCAAACCGCCAGGGAATCTATAAACAAAAACCGGCCGGAGAAGTCTTTCTCCAGCCGGTTTTATTTTTTTATTCCTGATCAGATACAAACACATAATGCTCTGCAAAGAACTTGTCCAAATCTCGCCCGCTGGTTTGTTCCATGATGCGGATGAAGTCTTTGGTGGTGGTGATGTCGAATTTCTTTTGTTTGTAGTAGGCTTGCATCGAGGCATAAAATTGCTTGTCTCCCAACAGCTTGCGCAAGTCGTTCAAGGTGCGGGCGCCGTAATCGTAGACCGTGTCGTAGTAGGCGTTGATGCCTTCTTGGCCGTAGGCGGTGAAATAGGAGATCGGATGGGAGAGATGGAATCCGGGAATCGGTTCGGCGGTGAGTTGGTCGAGTTCGTTGTCATATAGAGCGGCGGCGAAAGTGGCGAAGGATTCATCTAACCAAGCCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTATCAATGAAATACATCTCAGTTAGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 10 1357580-1357285 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDD01000001.1 Laceyella sacchari strain DSM 43356 Ga0244645_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1357579 31 100.0 35 ............................... AATGAACGGTTGAAATCCTTGTATTTAGCGCACTT 1357513 31 100.0 36 ............................... CTGACATTTTACCACATGTCAAAAAACCAATGAACA 1357446 31 100.0 36 ............................... TCGTTTTTCGTTTTCTCTATTCTCGCGAACTCCAGT 1357379 31 93.5 35 .........AC.................... TTCCGTTGGCTGTTCGAGGACTTCATTTGAACAAG 1357313 29 87.1 0 ............A......--.....A.... | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 96.1 36 GTTTTAGTTGTAGCCATAGTGGTATTGAAAC # Left flank : CTAGAAGTGAACCAGGAGCACCTCCTTATCGGTTAGACAAAATGCTGTACCAAATACTGACGAGAGCAAGGCAGGAGATTGCTATAGTAGTTTATAAAAACAAGCCCATGTTAGAGGCTTGTTTGAAAATATTGGGTAAATAAACTTGCGCTCTCTTCAAGAACTTAATGACGTTATAATGAAGAGACTTCTTATTTAGAAGTCTCTGCTTTTTTAACTATTCATGTGTCATTTTATATAAATTCTGTCTTTTGATTAGGAGTTTTCTGACTCATCTGTATCTAGATGGTGATTGATCAACGAAACAAGATGAGGTTGGGAGATGACGCTGATTTGCTTAAAAGAAGTGAGGGATGACACTATATCGGAGGTCTACCATATCCTTTAGTGCACTAAAAAGTCTGTGAACCTCCTGGGGTTTTTGCATTATGAGCGGTTCACAGATTATTTTGGTTTTTGATATAATGAACATGCTTGAAATGACTGAAGTTCACATACGG # Right flank : CCATGACCCCGCCATGTCTAACATGAATAAACGAAAAAAGCCCGATTTCAAAGAGAAATCGGGCTTTTTCTCATTTGATTAGATTTACATGCTTACGTTTTGCTGGGGCTTGCAAAAGAGGAGAATATCCCTAGAGCAAGATATAAATAGCCAGTGATCCGATTCTGCAATCTTGAACTCACTTGAATTCGTTTCATTATACTAGCGGCAAGAATGGCATACAGGCCATCACTGATCAATGCCAGGATAACAAAGATCGTTCCTAACAGAACAAATTGTACGGTGACGGATCCGGCAGAAGGCGATATGAATTGTGGAAAGAAGGCTAAAAAGAAGAGGGCTGTCTTAGGGTTCATTATTTCGATAAGTGCGGATTCACAAAAAATCTTGCAAGCTGATTTGCGAGTCCCGCTTTGCTTTTCCGAAGTCGTCAGATCTGTTGTAGAAAATAACGTTTTGCATCCCAAATAGATAAGATAAGCAGCGCCTAGGTATTTCAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTGTAGCCATAGTGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //