Array 1 113861-114559 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGCY01000007.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIIB2 .SLX_12186.D712_D506.HJ72NBBXX.s_1.r.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113861 29 100.0 32 ............................. CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC 113922 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 113983 29 96.6 32 ............T................ CCGAAATACGATGCCGGAATATCGTAAACGGA 114044 29 100.0 32 ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 114105 29 100.0 32 ............................. GATTTACTAAGGTCAACAAGGGATTGAATTGG 114166 29 100.0 32 ............................. CTCATGCGCAGCACTGGATCGAGAGCGAAGGG 114227 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 114288 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 114349 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 114410 29 96.6 32 ......G...................... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT 114471 29 93.1 32 .....A......T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 114532 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 131115-135111 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGCY01000007.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIIB2 .SLX_12186.D712_D506.HJ72NBBXX.s_1.r.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 131115 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 131176 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 131237 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 131298 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 131359 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 131420 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 131481 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 131542 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 131603 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 131664 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 131725 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 131786 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 131848 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 131909 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 131970 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 132031 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 132092 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 132153 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 132214 29 96.6 32 ............................T CGCCCACCCTGAGTATTATCACTACTCCGGAC 132275 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 132337 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 132398 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 132459 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 132520 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 132581 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 132642 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 132703 29 100.0 32 ............................. TATTTCACTGACTGACTACGGCGGATCGAGTA 132764 29 100.0 32 ............................. TCAGGAAACAGCGCAATATTGATTTACTCGCA 132825 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCGGAGATGGTG 132886 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 132947 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 133008 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 133069 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 133130 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 133192 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 133253 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 133314 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 133375 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 133436 29 100.0 32 ............................. CTGTTTTGTCTCACGCTGGCGACCTCCCTGGT 133497 29 100.0 32 ............................. GCGGGACCGGAGGCGCAAGTGGTGGCGCTTTA 133558 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 133619 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 133680 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 133741 29 100.0 32 ............................. GCGTTTGAATCCTCCTGGTGGCGTATGCAGGG 133802 29 96.6 32 ..........T.................. GCCCGAGACACCCGCGCGTTATTTTTGAACCT 133863 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 133924 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 133985 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 134046 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 134107 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 134168 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 134229 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 134290 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 134352 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 134413 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 134474 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 134535 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 134596 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 134657 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 134718 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 134779 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 134840 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 134901 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 134962 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 135023 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 135084 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 66 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //