Array 1 14201-15199 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDVW01000123.1 Pluralibacter gergoviae strain C3 contig2392, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14201 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 14262 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 14323 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 14384 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 14445 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 14506 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 14567 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 14628 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [14682] 14682 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 14743 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 14804 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [14809] 14866 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [14871] 14929 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 14990 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 15050 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 15111 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 15172 28 79.3 0 ........T.A.CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20463-18847 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDVW01000010.1 Pluralibacter gergoviae strain C3 contig2618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20462 29 100.0 32 ............................. TCAACATGGTCAAAAGGCTCTACGCGGACTGA 20401 29 100.0 32 ............................. TTGAAGACGTGACACCTGATAAGGGAGATCGC 20340 29 100.0 32 ............................. CCTGACTCAACAACGTACGGGAATCAGGCATA 20279 29 100.0 32 ............................. GCGGCAACTCGGTCGAGTCAGGGATTATCGAG 20218 29 100.0 32 ............................. GGAAAGCGCTGTCCAGCTCAGAAAACCAACTC 20157 29 100.0 32 ............................. TGATCCACCAGACGCCTGCACGGATTGGCTCG 20096 29 100.0 32 ............................. CGCATCGACTCCGCCGCGAACGCGGTCAGCAC 20035 29 100.0 32 ............................. GCATTCCACCTGGTGGGCCATCAGCACACCGT 19974 29 100.0 32 ............................. CAGCGGCGTCTTGTTGGTGAGGCTCTGCAGAA 19913 29 100.0 32 ............................. CCGCAGGCGAATTGCATACAAAGACGTTAACC 19852 29 100.0 32 ............................. ACACCTCTCGCCTGTAAAGCGTCGGATAACGT 19791 29 100.0 32 ............................. CGGGAACCCATCAATATCTTACCTGGACACCC 19730 29 100.0 32 ............................. GCCTCAGTAGAGCGCGCCAACCCAGAAAACGC 19669 29 96.6 32 ............................T TGATCTCAAAGCCTTCGCTGAACTTCAGGGAC 19608 29 100.0 32 ............................. ATTCTTAACGAACCATTCCGGCGTCTGGCCCT 19547 29 100.0 32 ............................. TCATCAGTTCTGATCTGCAGTGTTCCTGAATA 19486 29 100.0 32 ............................. GCATTTATGTCGAGGGTGTTCAGGTGGGCTTG 19425 29 100.0 32 ............................. CGTAATCAGAAATAAATCGCTGTCGCGAATAG 19364 29 100.0 32 ............................. GTGTGATAGGGCTTTAGTTGTCGCATCAGTGA 19303 29 100.0 32 ............................. CCACCGAGCTGCTCTTTTCCCGCAACGGCATG 19242 29 100.0 33 ............................. CCCTACTGGAGAGGTCATTGAGTCGCCCCTGAC 19180 29 100.0 32 ............................. TTCCTTTTGAGCGTTATCGACCTTTCTTAACT 19119 29 100.0 32 ............................. GCCTGCGTGACAACAACGCGGCGCTGCTGGAA 19058 29 100.0 32 ............................. CACAACGAATCGCACCGTGTATCGCTGTTTTC 18997 29 100.0 32 ............................. CCATCAGCGATTTGATCAGCGTCTGTGATGCA 18936 29 100.0 32 ............................. TTTGTCGCTCCCGCACCGGGGAAATCGCAGAC 18875 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCGGCCGGAGAGATCTCTCCACCCGAGCCGCCCGCCGACGCGCAGCCGATTGTGATCCCCCCTCCGGTCTCGTTCGGCGATGCTGGTCACAGGAGTTCGTAAGCATGGCGATGCTGATGGTTGTTACCGAAAACGTGCCGCCCCGCCTGCGCGGCAGACTGGCTATCTGGCTGCTTGAGGTACGGGCGGGCGTCTACGTCGGCGATACCTCCGCGCGAATACGCGAGATGATTTGGCAGCAAATCACCACCTTCGCCGAAGAGGGCAATGTCGTTATGGCGTGGGCCACCAACTCAGAATCGGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGAAGAGTGCCGGTAGATTTAGATGGACTGAGGCTGGTTTCGTTTCTTCCTGATAATAATCAGTAGGTTATTAGCTCTTTAATAATGGGGAATTGTTTGTTTTATGTTGGTAGAATTTTGTGCATTGAAAAAGCTGATTTAAAACAGTTGGTTGTATTTAGA # Right flank : ACAAATGGACGTGGGAAGAGCAAGAAGATTACGTGTTCCCCGTACTTACGGAAACAAAACCAACCTAACCGTGCCGCAATAGCTGACAATGCGCTCTCCTCCGCAGCATCAGCAATAAACAATTCCCTGTTCCCTTATTTCCCCACCTTCTTATTCCCATTGGCGCCTTTCGCCGTTCCTGCCAGCTCCTTCACCAGCGGCAGCATCACGTTGACCACTTCGCGTCCGCGCAGGTCGATGCGCCCCGGCAGCGCTTTGTCGAGGTACTGCTGATTATCAAGGCGCGGGTCGTGCCAGCTGGTGCCCTCGGGGAAGGTGCGGGACTTGGTCCGCTGCTGGTAGCCGTCTTTCTTGCCCAGCGACCAGTTGGTGGCCTCGACGGACAGCACCGGGATGCCGGCGCTGTCGAAAACGTCGGCGTCGCTGCAGCAGGCGGTGCCTTTGGGATAGGCGGCGTTAAGGCCGGGGTTGGAGGCGGCCGGTACGCCCCAGCGGTGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31762-31184 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDVW01000010.1 Pluralibacter gergoviae strain C3 contig2618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31761 29 100.0 32 ............................. ACTGCAATTACCATCGCCAAATAACGCCCTCA 31700 29 100.0 32 ............................. GCAAGGTCGTGCTTGAGTCATGCATGAACCAT 31639 29 100.0 32 ............................. GCCGCAAGAGGTGAATGATGTCCCCAGCATTA 31578 29 100.0 32 ............................. AATGAGCTGATCTTTACTCAGGATTGAGGTAG 31517 29 100.0 32 ............................. CCTGGAAAAGAAAATATGTACTCAGAGTGGAG 31456 29 100.0 32 ............................. ACTATCCCTACCGGTTTGACCGGGAATTAGCT 31395 29 100.0 32 ............................. TCCGCCGTGGTGCCTGGCAGCTTGTCGCCGAG 31334 29 100.0 32 ............................. GTGATAACCAGGCGCATTCACAGCGCATGGAT 31273 29 100.0 32 ............................. CGCGTAGCCCACTATCGCAACGGCCGCCCTGG 31212 29 93.1 0 .............T....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACCTGCAAAAGCACGGCCTTAAGTACCACCCGCTGTGGGACGAAGGCTACCTCTCCGTCGGCGATACCCACACTACCCGCAAGTGGGAGCCGGGCATGGCGGAAGAGGAGACGCGCTTCTTCGGACTCAAGCGCGAGTGCGGGTTGCACGAAGGGTAAGGGCAGGGGCTGGCTCAACCTGGCGCAAACTATCTCAATATTTTTAATCATTGAGATAGTTTGTTACGGCATCCGATCCTGGCGGTGCTATTACCGAACGTCAAATCTTCAGAACAAAGTTGTGCTAATACCTTACGCCGGGGTCTTACCTTCCTGAGCGCTCCCTCAGCGTTATCCCGGGATATTTATGGGGCCACTTTCCGTAGAATGCGATCCAGGTAAAAGACTTCCTATAACGCTCTAATAAAATCAATTAGTTACTGCTCTTTACTAATCTGGAAAAGTTGGTAGATATTTTCTTTCAAAAAAAACTATTATTATTCATGCGGTTGCTTTTAGA # Right flank : ATAGCATTGGCTGTTCCATGTTTGTGCGCTATGATTATGCACATAAACTATGCGCAGGAGGTTATGATGAGAACGAATGTTGCCGAAAAAAAACGGAGTACAAACCTGTACTTAAATGCTGGACTGCTTGAAGAGGCCAAACAACTCGATCTGAACATTTCCGCGATAACTAACCATGCGTTGGAAATGGCCGTTATAGCATGTAGGCGCGAACGCTGGATCGAGGAAAACCGCGCGGGCATCGAGGCGTTAAACGGTTTTGTAGAAGAAACGGGTATTTTTTCCGATGATGAAAATTTCGGGGTAATTTAGTGAAACAGTTTGCAGTTTATAAAAATAAATTCCGAAATAAACAGGCATACCCGTATTTCATTGATGTGCAGACAGATATGCTAGCGCATCTCAATACTCGCCTGGTTATGCCGCTAACTAAGAAAGATAATTCTAATTCGCAGGTAAAAGCGTTAACACCGGTGATTGAAATCGACCAGATTGAGTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //