Array 1 75619-77328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOC01000021.1 Photorhabdus luminescens strain LN2 Scaffold21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 75619 28 100.0 32 ............................ AATCTCTGACTATACGAACTACTTTACCACCT 75679 28 100.0 32 ............................ ATCGGGGAATTGAATAACGAAAATACTTCTAC 75739 28 100.0 32 ............................ GGACGGTACGGTTATCATGTCAGGTGCGGATT 75799 28 100.0 32 ............................ AATTGAAGCCCCGGATTCAATTCAATCAATAT 75859 28 100.0 32 ............................ AAGCACGAACAGGAAATGATAGCACTGCCGAC 75919 28 100.0 32 ............................ TTATTGATCAAGGTTTAGGTATGACCGAAAGG 75979 28 100.0 32 ............................ CATGCTATTAATCTCTGCTTCTGTCAAACGCG 76039 28 100.0 32 ............................ AGAGGAAATTCTTATTGGATTAAAAATCAATC 76099 28 100.0 32 ............................ CAAGGAATGACTTGAGGGTCATTACAGTAGCT 76159 28 100.0 32 ............................ GCACTGCCCCGCCACATGACACCGGATCGCAT 76219 28 100.0 32 ............................ GTGGACGTAATGATTACATACGAAGCAAAACT 76279 28 100.0 32 ............................ AACATGTGTATCTGAGCATTTATGATCATGGG 76339 28 100.0 32 ............................ TCCAAGTTGGATGATGCAGCCAGCCCCAGATT 76399 28 100.0 32 ............................ GATTGGAGGACTCCGCTATCAGGGATTATTTC 76459 28 100.0 32 ............................ ACTGAAACGATTTGTAACCACTGTGACGATCA 76519 28 100.0 32 ............................ ATCACCGCCTACTGCGTTTTCCACATTTTCTA 76579 28 100.0 32 ............................ ATTCAAGAGCTGGTATAACTTTATCGGAACGA 76639 28 100.0 32 ............................ ATTAAGGGGTACACAGAGCGTAAGAGGGCATG 76699 28 100.0 32 ............................ CATGGCCGCAGCACAAAAATTATATGAACAGG 76759 28 100.0 32 ............................ TCCATCACATGCCAGTGATAGTTCAACAGCAC 76819 28 100.0 32 ............................ ATACGCGCTTTTAATTTTCCACAAAATACGTT 76879 28 100.0 32 ............................ ATGCGTCGATTTTTGCGGCGTAATTTGCAACG 76939 28 100.0 34 ............................ TCGGGAGTGAATCCTGGTCAACAGGACACGGCAG 77001 28 100.0 32 ............................ ATACGACTTGCTAGTTCACGTTTTTCACTCTT 77061 28 100.0 32 ............................ ACATAGCAGATTTTGGCATTGATGATAGCTGC 77121 28 100.0 32 ............................ TGTTAAATAGTCAATTAATCGATATTTGTTGT 77181 28 92.9 32 .............T.A............ ACAGTTCAATTAACTCAATGAGAGTCCGGCGA 77241 28 100.0 32 ............................ TGACCCGGTAGGGCCGGTTACGAACAATGCGT 77301 28 96.4 0 .................T.......... | ========== ====== ====== ====== ============================ ================================== ================== 29 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGGTATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGTCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGAAAATTGTTGGAACGATTGGGTTTTGAACGTGAAGGTTATGCCAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCATTGACAGATGACAAATGGAGTGGAAAAAGTTGATTATTAAGCTGTACTGTCACCAAATAAAGTAAATTAAATTAGTAATGATGAATTAAACCATCGTTGAAAGTTAGCCTTCCCCGTACCTTATTTTTGACCCTTTTTTAAGGGCTGATTTTAATTTATTGATTTTTAATGGAATATTGTTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATGCTTTAATCGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : ACAAGAGTTTTATCCTGAGTAAGCTTTAATGAGTTGACTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTTGAAGTGGCTATTTGAGCTTTCTGTAGTAAGGCTAGTTGCAAGTCGCCATCATCTAGGCCGAATACGATGTTACATTGGCAGCTTATAAAAGTTAATGAGTTCTAGTGCATAAGCGTGGATTTATGTATACTCGCCGCTTTTGTTAGCAAAGTGAATGATTAACCTTGGTAGATTCACGTAATAAATGCAATATCGTTACTTTGGAAGTAAATATATTCTTATTCCTTTAAATAATTCATTGGATATTTTATTATTGGCTAATTGTTATGGAAATAATTTGAATGTTTTTTTAATCCATAAAAATAGGTATTATCCTAATTGGCCTATTTAATAAGAATAACAATCTAATTGAAAAAAATAGATAAAAAAGAGTGAGTGAAAATAAATATTCATATAACTTGAGTCCGTACATAATTTTATGTTAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 233505-234122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOC01000002.1 Photorhabdus luminescens strain LN2 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 233505 28 100.0 32 ............................ AATTGTCTACTCCTGCTCTCTGTAAGCAACTT 233565 28 100.0 32 ............................ ATGACTAAAAATACAGAGTCTTTAATATCAGC 233625 28 100.0 32 ............................ TATTGATACCTCTCAGTTCAGGTTTCCAATAT 233685 28 100.0 32 ............................ TGCACGTAGCCGTTGTATTCCAGAGTACGATA C [233693] 233746 28 100.0 32 ............................ CAAGTTTAAATTAATTATGTCTGAGCATCAGA 233806 28 100.0 32 ............................ CCAGATTTGAAAAATACACGATGTGGCTAATG 233866 28 100.0 32 ............................ AATGGGATAGATTTCGCATTTGCACCACTCAC 233926 28 100.0 32 ............................ AGCCATGCAACATAAACCGCCGGCGCGGTATT 233986 28 100.0 23 ............................ CAGTTTATCCATCATCGTTAAAC Deletion [234037] 234037 28 78.6 31 CCATTT...................... TTTGTATACCGGATGAATTACCCGCAGTGAA 234096 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.7 31 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGAAGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGTTTGTAGTTACTTAGTTTCTAATCAATGGACGAAGGGAGCCTGGCACCAATATCTAATACAAACTTAAGGCGTTGGATGAGGAATGGTGCCCGGGTTCCGAGTGTTCAAAATAATGCTTAAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTGCAGTTATTACAATGTATTAAGGAACATTTGGTTGTTCTTGTGGTGGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGCGCTTTTGCTATGCCCCAGTTTTGACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAAATATCGCCTAAAAAAAGGGTTTTTTCATTTTTTATCATTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACG # Right flank : ACACGATAACTGCCTTAGGTTGTTTAGGTATAAATGGGAGATTAATTGCGCAGCCTTGGGGCCAGTAGCTGATTGCGGATAGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGCGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGCCTTTTTTTGCTTTAATTGTGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 267802-268729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOC01000002.1 Photorhabdus luminescens strain LN2 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 267802 28 100.0 32 ............................ AGAAGAGTAGCCAGGAATACTTCCGTTATGTA 267862 28 100.0 32 ............................ GATATACGGGGTGCCATATTTTTTTACCATGT 267922 28 100.0 32 ............................ ACTGAATAATTGCTTATCTCCTTCGAAATCTG 267982 28 100.0 32 ............................ AATTGGCGGACGTGGTGAGCCCTGCATATCTT 268042 28 100.0 32 ............................ GTCGAGTGTAATACTATCTTCACCGGCTCCGA 268102 28 100.0 33 ............................ TGTATTTGACCATGATTTGCCGCGGTTAACTAA 268163 28 100.0 32 ............................ CAGGGGTGCTTATAATCGACACTTAAGCCTTG 268223 28 100.0 32 ............................ GATTTTGATTTGATGCTGATGGATTACTACCC 268283 28 100.0 32 ............................ TGATGGCAATTTAATCATGACACGAGTAGGTA 268343 28 100.0 32 ............................ TGCGAAAGATATTACCCCCGACCATATTAAGC 268403 28 100.0 32 ............................ GCTGAACAACATCGTGACGCACTAATTAAAAT 268463 28 92.9 32 ............G..............T AGTCAGAGAAGTTATAAAACATTCAACTGAAA 268523 28 92.9 32 ............G..............T GGGAGCCAAAGAAATTAAAGCGCCGACTGGAA 268583 28 92.9 32 ............G..............T AACAATATGATCGTCATTTTGTATGTCGGAAA 268643 28 96.4 32 ............G............... AGTCTGTACGAATCCCGGCAATGTCTGGCAAT 268703 27 89.3 0 .....................-C....T | ========== ====== ====== ====== ============================ ================================= ================== 16 28 97.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGACTTGCAGTCTTTATCTTGGTTAAAAGGACTTCGGGACTACACTGAAATGACTGATATTCAGCCAATTCCCCAAGAAACTAAGTACTGTTGTGTCAGCCGAGTGCAGGTTAAAAGCAGCGTGGAGCGGCTTCGTCGTCGTTCAATTAAAAAAGGGTGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAGGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCGGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGACCAATACAAGACAAATCGACATCAGGAGTTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGAGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TAAAAGAGTTTTGCTTTAATAGCAGAACTCTTTTATTCCTTAAGGTTTTGTATTAATAATATTAGTGACGTGTTTATCTTAAGAAATATTTAGGGAATTGAGGACGATATGCCCGTAGGAAAATAATGTAGCTTTGCCTGATAAATGCACCCGATCTCCATGTAATTCACACATAATGTCTCCACTGCGTTTTGACAATTGGCGTGCATACAATCTCTGTTTATTTAAACGGTCGCTCCAAAATGGGGCTAATACACAATGTGATGATCCGGTTACTGGATCTTCTGGTACGCCCTTAGCAGGTGCGAAATATCGGGAAACAAAGTCAATTTGTTGTTCACCTAGTGCTGTTATGACAACTCCTGGTAAAGGCAGAGTGGCTATTTTGTCAAAATTAGGTTTTGTATTTAAAACTTGTTCTGTGGTTTCGAGTAAACAGATGTAGCGATTATGAGAGACAAAAAGCTCGGATATTTTCTGACTTAATGCATTTTCGATAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 269931-270799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOC01000002.1 Photorhabdus luminescens strain LN2 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 269931 28 100.0 32 ............................ GTTTAGAGATTATTGCAATGATAATTTCGGAA 269991 28 100.0 32 ............................ CTCTCTTTAGTCTCAAAAACTAAGAAACCCAG 270051 28 100.0 32 ............................ TTACGCTGCCCGTTCTCTGTCATAGAAGCTGC 270111 28 100.0 32 ............................ CATTTCACGGCTTAATGTTTGGTACGGTGTGG 270171 28 100.0 32 ............................ TTACAAACTCAGTCCACGGAGATTGATTACCC 270231 28 100.0 32 ............................ TTATTCAGTATGGAGATGACAAACGAGCAGAT 270291 28 100.0 32 ............................ ATTTCCGGGAGAGTCAAATTCCAATATCAGAC 270351 28 100.0 32 ............................ GTTTAAGGACGCGTTTAAGCTGGTTAAATCAC 270411 28 100.0 33 ............................ AAAAGTAGAAAGAGAAGGAGACACGTCAGTTGT 270472 28 100.0 32 ............................ TCTCGCGGCATCTCCGACTACATCGACTCAAC 270532 28 100.0 32 ............................ GGATACAGCCCAGGCTACTTTTTTCTCTCCAT 270592 28 100.0 32 ............................ ATCTCCAATAGTGTTTGTATCGGTTTTATTAA 270652 28 100.0 32 ............................ TGATGAGCAAATCCGCCGTGATAAATTGATGG 270712 28 100.0 32 ............................ AGACGATTTAATATCCCGTTTAGATACTTCCT 270772 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCAACGTAGGTGGTTATCGACTAGGAAAGCAGTTTCAGAGAGATTTATTTCCATAGCAATAGATAATAGAGTTTCATCTGGAAGCCAATTATCTAATATAACAACAGCGGCTGGATTACCAGAGAATGGGCTATCGGTGAATGCATCGACATGATAAATGGGTAGCGAAGTCATTTGTATCTCTCTTAAAATAGAATTAGTCATGAAAAAGGGATCAATCTTCTTAATTTTTATAAAAAAATTGCCCGCTATTTTATACAACTATATGTGATCGTAAAAAGAGTAAGCAGCTCAGTTTTAGGATATTTAGCTGGTTTTCTGAAGCATTGGGTATCATTGCATTAACCAGATATGCGACCCTATTTTTACCCTTTTTTTGCAGTTAATTTTAACTTGTTGATTTTTATATAATATTATATTGTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGAGGTAGTATCTAACAA # Right flank : CTCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTGTTCGATATGCATCAATTGATATGTTTTTGTGCATATTCTTCACTGTTAACCCATTGGTGGTCTTTTTCCCAAGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACTATTACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGATGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCACCGGTAAAGACTTCAACCACCAACAAGCTATTAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 500915-501122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQOC01000002.1 Photorhabdus luminescens strain LN2 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 500915 28 100.0 32 ............................ ATTTAAATGGCACATCGCGATGGAGGGTATTA 500975 28 100.0 32 ............................ TTTACGTATTCGCGACTCGATTTCTCTTGTTT 501035 28 96.4 32 ...........T................ ATATGGGAAACTATCGCTTATCCCATCTATTC 501095 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTGTACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGTATTGATAGTGGCCGTGGAGTTTTGACTCACCAAGGGGATGCTATCAGAAATATTGAGGGCTCATTTCCTGGGGCAATAACAAATGGTTTTCATCTGGCAACAAAAGGGGCTTGTTATGCTAGTGCAACTTCTGGAATGGGTGTAGATGGAAAGCCTAGATCGGTAGGTCATTTTACCCCGGATGTTGTATACACTGAATACGGTTTTGGGTTCGATGCGTCAAGGGTTGTTCCAGTAGCCTCAGAGAACCGCCCCCGCAATATAGCATTTAATTACATAGTGAGAGCAGCATAATGGCTGAATAGAAGTACCTTTTGAACCAAAAATAGAAGGGGAGGGTGCTCTACTTAAATGAAAGAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAATAAATATTATTCACCCCGTAAAAAAGGGTTTTTTATTTTTTATAATGATTATTCTTTAACATTCAGTAGATTGGGGTTAATATGCAACA # Right flank : AGCCAACGCTACGTTGTTTTCCTTAGACTTGCGGATATGTTCTTCTAGACGGTAGCAAGTCATATTAAGATGATTAGGGGTATACAAGTATTGGTTTATAAAAACAAGTAATACTTGTTTTTATAAGAAGGGTTTATTTTTATTGATTGTTAAAAATGTGACTGCTTAGACATTCTTAGGTGATAGTGAAGGATATAGGGCAGAAAAGCCACCGAATGGTGGCTGGTATATTTATTGTGCTTTCTTTCTGAAGTTATCGTCATTTTTAACGAACTCAAAAGCATCAAGGATAATACCTGTTATCCTCAATATATCTTCTGGAGTTTCTATAAATATTCTTGAGTTATTAGCAGATAATCCAGCCCTATTAACTTCGTTGGCTAATATATCAGTTAGCTCAATAGGTATCTGGATGTAAGGTTTATTCTTCTTGTCAAAGTATCTTATTATCCATCTATTTGATTTTCCTTGATAAAGAATTCCAAAGTAAGATTCTGTAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //