Array 1 140582-140347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSN010000002.1 Bartonella sp. W8099 NODE_2_length_545821_cov_232.736184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 140581 36 100.0 31 .................................... TCTACCAGATGGTTCACACCACGAAAGCCAA 140514 36 97.2 30 ...................C................ TAATGCGCGGATCACCCTTCGCATCGACAA 140448 36 100.0 30 .................................... CGGCCTCAACTTGGCTGAGACCGCACTGTT 140382 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 98.6 31 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTGTTTTGCATGTCACGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTGATGCGATGGTTCGTTGCCTCGCCCGGTGTGACAAATTCTAGATTGTCAGGACGGATGGAAGTATCAAGTAGATTAGTCTGATAATTCTGCCGTGGTTCAGGATTGATGGGGTGCTCGGTGCGCCGTCTTATCACGTGCCCAAGCTTTCCTATTGCAGCGAAGCAGCACAGTATAAAGCCAACCAGAAGCCATATGCTCACTATTACATCCATTTTGTTCCTCCCCCTGCAATGCTACACCGTTTAAACATTTACACACAATAGC # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCCGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCACTCGTTCAGGCAAGGAGGATTCGATCTTCCCGACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGAACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATTG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 141712-141345 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSN010000002.1 Bartonella sp. W8099 NODE_2_length_545821_cov_232.736184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 141711 36 97.2 30 ................................T... ACAGACAAGCGTCGGCAACGTCGCACCGTA 141645 36 97.2 30 ..............C..................... ATTGTCGTTTGTGGAGAGCGTCCAGTTTCA 141579 36 100.0 31 .................................... GCATCCGGAACCTTTATCATATAAAAGACAA 141512 36 100.0 30 .................................... CATCCGGTGATGCGATACGCGCCTTATCTT 141446 36 97.2 30 ..................................T. TCAATAGCGGTTTTATCACGTGGAGTTTCG 141380 36 91.7 0 ...............................G.C.G | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 97.2 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CTAAAAATCTGACTATATTTTCACTTAAGTGCACAATCAATTTTCTCGTCCCTCAAGGTAGAAAAATATCGAACTTTCATCGTTCAGGCAAAGTATTTTTAATCCGCAAACGTAAGCATCCTATCAAAGCGACACCAGAAATTTATTCATCAATCACTGAACACGCAATTACGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTTGGCTAAGCGATCTGCAAAAGATACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGCAAAATTTGACGACACCGTTAGGTCGGAAACCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATACTGGAATTGGCAAATAAAATCAACAAACAGCATCATGAAGGAAGTAAAGATTGAGTATAATAAGATTTTGCTACCGTTCT # Right flank : CACAATCCAAAATCATCCTGTCAGGCAACCACTAGCCGCGCATTGACAACACGTCAGATGGTATTTAGCGACGCGTGTTTTTCGTGCCTTTGGAAATCCAAGCCCCAAAAAATGAAAACGTTGGCCATACTTTGCCAAACAACAACACGCAGCGATTTTGGAAAGTAAAAAGGGCACGACTATTTGTAAAGGCATTCGCGTCAAGTCGGAGTTTGTCCAACCCGCAGGCTGTGAAGCGAACACATGAAGAGAGTAAGTTCAGTATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTGTTTTGCATGTCACGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 182459-181628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSN010000002.1 Bartonella sp. W8099 NODE_2_length_545821_cov_232.736184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 182458 36 100.0 30 .................................... GAGATAAGGTTGCGCAGGCTCATTGGCTTT 182392 36 100.0 30 .................................... AACTGCCGATATATTCTCGAACAATTAGTT 182326 36 97.2 31 ..............C..................... CAGCGTCAAAAATTACCGGATGCCCTGTTAT 182259 36 100.0 31 .................................... TTCACTTTCGCACCGCGTCTTTAGATCATTA 182192 36 100.0 30 .................................... TTCTGTTGACTTTTGGGGTCGTCGCGGCTA 182126 36 100.0 30 .................................... GGTATTATTTGACACCCAAAGCCTGCGCGG 182060 36 100.0 30 .................................... CCCATGAAAGAGTTAGTCGCTCACATCAAT 181994 36 100.0 30 .................................... ACTCGGCATAATCGCACTTGCTTTGACTTA 181928 36 100.0 30 .................................... CAGAGTTTGAAATCATTGTTCGATGAAGAA 181862 36 100.0 30 .................................... ACAAGCCCGTCATCACCAACCAGCCCATCG 181796 36 97.2 30 .......................G............ CGTTAGGTGGAAATGCTCCTCTTGTTTTTG 181730 36 97.2 31 ..............C..................... TAGTGTCTTCAAAGATTTCGCGCGTTTCTGA 181663 36 97.2 0 ....T............................... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 99.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TGTTTCTAAACTGATGTTCGATTTTCCGCATTCAACCTTAGAAAGGAAAGCCTGTTCAATGCCCGTAACTCGTTGGATGTCTTTTTGCGTCATACCAAGTACTTTACGTGCAGCGCGAAGATTTTTCCCGAAAATCGTTTTTTCGTCGTCCATTGTTCCATTCCTTTCTCTCCCGCTATATTCGCGATACACATGTTTTGCTTTTTTCCCATAAAAAAGCAATAAATATGTCATAATCAACATATTAACCGAATTAACCAAGAAAGGAATTAGGACAGGGGAAAGAAAAAACCTCGAAAGCGGCGAAACTTTGAGGGCCTTCACAAAAAACAATAGCAACTTCGCTAAGGTATCCAACTTAAAATCACTTTAAGCGTCTATCTTGTTCTGTCGCAAGAAGTTTTTTGCGGAACGGGGCTTTTTGTGCTTTTTTTAGTCTGAAAAAGACAAATGTTCACACAAATAGCGATTGTTTCCCAAAAATGGAATGCGTCCGTGTT # Right flank : CGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTAAAAAAAATGCCGTTTTTCATTAAAATAACACCCGTAAATTTCGATTTTTTTTGGCGCGTCATCCACGTTTTTCCTAAAAATCTGACAATATTTTCACTTAAGTGCACAATCAATTTGCTTATCTGTAAGGCAAAAAAATATCGAAATTTCATCGTTCGAGCAAGGTTGTTGCGATCTTCTTAAAACTGGTTAGGCCAGCATGTTCGGGCTTTTTTTTAGAAAGACCTCAAGCAATTTTGTCCCCCACGGTTTTCGATTTCTTAGGAAAGCTTGCCGTTGATAATATACTGTTGAATGCGTCGTGCTACTTAACAAGAAGTCCGCTTTGATAAAGCGGGCTTTAAGATAGCGTGATAAACCGTAAGACAGCGAGTTAAACCGGTTTGGCAGATCCGGTTTGCTTTTGTCAATTTTTAAGCGTGGCTAAAGCCGAACACGCCTGTCCCACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 184984-184220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSN010000002.1 Bartonella sp. W8099 NODE_2_length_545821_cov_232.736184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 184983 36 88.9 30 ACA..C.............................. ACGTCTATATGACGCAAAGCGCAAGCATTT 184917 36 100.0 31 .................................... AAAGCAAGCAGACAAAAAGGAAGGTGAATAA 184850 36 100.0 30 .................................... CTGATTTTGAACGTTACACCGACCGGCTCA 184784 36 100.0 31 .................................... TCTCATTTTCTCTCGATGATGCCCCTACTCC 184717 36 100.0 30 .................................... GTTCTAGACCTACAGCAATCAGAGCTATTC 184651 36 94.4 30 ..............C....................T GGTTCGGTCGAATGCCGACCAGCAGCTCAT 184585 36 100.0 30 .................................... ATTTGTTTGTAACGTTGACTGAGTGTCCAA 184519 36 100.0 30 .................................... TCATTTTTATATTGACAGTTGTGGCCTTTA 184453 36 97.2 30 ..............C..................... ATACTGTTTTGGGCATCATGGGTGGCTGGT 184387 36 100.0 30 .................................... TACGGGTGGGACAAAACGCCAGACAGTTCG 184321 36 97.2 30 ..............A..................... TTAACGGAAAAGTCACAGCCACAGCGCAGC 184255 36 94.4 0 ..............C.................T... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 97.7 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTTGGTATGAAATTCGGGGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGGAAGGTGCTGATGGCGGGTTCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACACCCTATTTGCTGATGATTATTGTGCTTTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCCCTTGCCTTTTCGGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCAACCGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCCGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGAAGATTTTCATAGCGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCCCGTGATGCAGGCCATGCCTTGAACGAAAAAAGCAAACAACCCAACGCACAACATTGATGAAACCGAAACATATTCT # Right flank : CGATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCCGTTTTTCATTAAAATAACACCGGTAAATTTCAATTTTTTTGACGTGCCTTTCACGTTTTCCCTGAAAATCTAACAAGATTTTCACATTGCTTGCCAATTCAGAACCGTGGTTGGTCGCTCACCGCTTGGAACACCTCCTGTAATTGGCATTTGGTATCAACGAGCAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCATTCATATTCCCGATGAAATCGGGAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATAGAGAAGAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAACGCACAAATCACGGTAAAGGCAAGCAAAAGAGGTATATCACAGAAAGGAAAGTAACACGCCGTGGGGCCGGAAATGCAATCCCCAGATCGCTGAAAGCCATGGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //