Array 1 109593-108221 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTR01000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3309 NODE_2_length_650516_cov_1.50285, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109592 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 109531 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 109470 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 109409 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 109348 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 109287 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 109226 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 109165 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 109104 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 109043 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 108982 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 108921 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 108860 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 108799 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 108738 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108677 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108616 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 108555 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 108494 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 108433 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 108372 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 108311 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 108250 29 100.0 0 ............................. | A [108223] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127162-126157 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTR01000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3309 NODE_2_length_650516_cov_1.50285, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127161 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 127100 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 127039 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 126978 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 126917 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 126856 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 126795 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 126733 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 126672 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 126611 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 126550 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 126489 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 126428 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 126367 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 126306 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 126245 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 126184 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //