Array 1 29112-31047 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWLA01000025.1 Calidithermus roseus strain NBRC 110900 contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 29112 37 100.0 36 ..................................... TGCGGGCCCAGGGGCGCTGGCTGGTGGGGGTGCGTG 29185 37 100.0 36 ..................................... CAGCCATTCGCAGGCCTGGAGCATGTGGGCTACCGC 29258 37 100.0 35 ..................................... GTGCGGCGCGAGCGGGCTTACTGGCGGCGCTACAC 29330 37 100.0 36 ..................................... GTATTCCGCTACCGCCGCGCCGCGGAAAATCACGAG 29403 37 100.0 36 ..................................... TGTGTGCCTAGGTGTGCGTGCGCCTAGGCTCCGTGT 29476 37 100.0 37 ..................................... ATTAGGCTTGGGGGCCTGCAGCGTCCAAGCTACCAAA 29550 37 100.0 38 ..................................... TCTATACGCGCGCGCGCGGGAGCGCGGGAGGGCACGCG 29625 37 100.0 35 ..................................... CCAAAATCTTTGTGCGCTTTGGGCGGCCCCCGCGC 29697 37 100.0 36 ..................................... CGGCTGGTGCAATCGCGGTTGCATCACGCGTACCAT 29770 37 100.0 37 ..................................... GCCTTATCGGCCCCCGCTCCCGGAGCTACCTCAGCGG 29844 37 100.0 35 ..................................... CCTCCGTCCTCGAAGATGATTGTGGCGGAGGTCAA 29916 37 100.0 36 ..................................... AGAGGGTCCATGAAACCACCACCCGTGTGTGCGCAG 29989 37 100.0 34 ..................................... GGGAGCGGGCGGCAGGACGCCATAGCGCAAGAAG 30060 37 100.0 37 ..................................... CAAATTGGGATTTTGCCTACCAGATGGGGATTTCCCC 30134 37 100.0 36 ..................................... GCGGGCAGGGCTACCTCTGCCACGGCTTCCACCCCT 30207 37 100.0 34 ..................................... CTTCAGAGGTGATTGCCAGCTCAGGGCGATCCAG 30278 37 100.0 35 ..................................... GTAGTCGCTTTTTGCTTGGTTTCCTCTTTCCAGGC 30350 37 100.0 37 ..................................... TTATGCTACTGCGCCGAACGCCCAATGGGCGTGGGAG 30424 37 100.0 36 ..................................... ACTCCCGTGAGGGTTGCTCCTCCAGCGGTGTAGCCC 30497 37 100.0 37 ..................................... AAGCGCTGCTGTAGCCATGTAAGCCTCCTTTGCTCTC 30571 37 100.0 36 ..................................... AAAGCGGAAGTAAACCTCTTCGGCGGGTGCCGGAGC 30644 37 100.0 36 ..................................... TGCACCTAGGGCTAGGCGCACCTAGGCGCACACACA 30717 37 100.0 33 ..................................... ATTCATGCCCGCCTCCTCCGCCCACACCCGTGC 30787 37 100.0 39 ..................................... ATCCCACCACTGGTTCGGGTTGGGCGCCGGATCGAGCGA 30863 37 100.0 38 ..................................... GTCGCCAGGCCAATGGGGATTGCTACGCAACCCCGGCG 30938 37 100.0 36 ..................................... TAAGGTTGGTTCTCCCTTCTCCTGTGGCTCGCACTG 31011 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 27 37 100.0 36 GTTGCAGTGGGCAATTAAGCTCACTGAGGATTGAAAC # Left flank : TGGGCAAGTAGGAGTGCATCGATGGAACGGCTCGACATCCTGGTCACCTATGACGTCAATACCATCTCGGAGGAAGGCAAAGCGCGGCTGGCCCGCGTGGCTAAGGTCTGCAAGAACTACGGCCAGCGGGTCCAGATGTCGGTGTTCGAGTGCCGCGTCACCCGGGCCCAGCTCGAGGAGCTAGAGGCCAAGCTGCTCAAGGTGATCGAGCCTGACAAGGACAGCCTGCGTATCTACACCCTTCCAGGCGGGCGGGAAAAATGCTTGAGAACACACGGGCAAGACCGGTACCAGGACTTCGATGACCCCCTAGTCCTTTAGCGCGAACCCCTAGTAGTTGCAAAAATCCAGGAGGTTCGCGCAAAGCCATTTTGTGGCTTGGGTACTTTGAAAACTTCGCTATACTGTGAAGCACCTCGCACTGCGGAGGTGGCCTTGGCTCCCAGGTTCGCGCAGCGCTGGCAATAAATGCAGTCCTGCACGTGTGGGTTTTTGAGGCC # Right flank : CATTGGCCAACCGGTAGAGCTGCTTGTTGCTGTACCGCGATACTGGGAGGATGGTTCTGAACCACCACTTTGCTTTGGCTATTCTTGGACATGTACTATGTAATCCATGTTGTATCTAGCCGGGAGAGAGGTGGACCCCCAAGCGCTCACCACCTGGCGGAGCTACCACCTCCGGGCTGAGGAGGTGCGGCTCGAGCCCCCTCAAGCCCTCACCGTCGCGCCGCTGGTCCCCGGCCTGTGGAGCCTGTCCACCGGCGGCTGGATGGGGGAAGCCCGCCTCTGGCGCGACGGGGAGCCCCTGTCGTTGCGGATCCAGGATGAGAAGCTGGACCCCGCCGCCTGGGAGCGGCTCCTCCAGGACCTCAGCAGGGCCGTCAGCGGGCTGCCCCTGGCCGAGCTGGCCTCCGGGGCCAGCTTGACGCCGGAGCCCACCCCCGGCACCCGCTACGTGCAGTACCTGCTGCTGCGGGGGCTGGGCGACCGGGTGCTGGAGGCCCTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTGGGCAATTAAGCTCACTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 40499-38526 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWLA01000003.1 Calidithermus roseus strain NBRC 110900 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 40498 35 100.0 40 ................................... TTCTTCCCTTTTCCCCATCCTCCCCTCCTTCTAGGGGCCT 40423 35 100.0 39 ................................... GGCTTCGGCCTCGGCCCGCTGGCGCTCCTCGCCCTCCAG 40349 35 100.0 39 ................................... CGATCTCGTGCTCCACCACCGCCATCAACTCCGCATCGG 40275 35 100.0 42 ................................... CGTAACCGGTGAGCTATTGGCCGACCTACACTGGATGAGCGA 40198 35 100.0 37 ................................... ACGACCGAGCTTGGGCCGGAGGGCCCCACCTCCACCA 40126 35 100.0 42 ................................... TGGAGGGCGAACTTCCCTGAAGCGCCACACAGCATCTTGTGT 40049 35 100.0 43 ................................... CACCACCGCCATTAACTCCGCATCGGAGAGGCTGCTTGCAAAG 39971 35 100.0 40 ................................... CGGGCCGGACGGCCCAGTCTCCGTCGTCATCATCTTCGAC 39896 35 100.0 40 ................................... ACTTCCTCGTCGCTCATGGTGGCGCCACCGCTCGTGGTGG 39821 35 100.0 40 ................................... AGGGCCGGCGCCAAGAGGGCCTTGATCTCTTCCTCGCTCA 39746 35 100.0 42 ................................... GCCCAGGCTACCAAGGCCTCGTCGGGGAACCCGATGATGCGG 39669 35 100.0 39 ................................... ATCTGGGTTCCGCCACCTACGGAGGGCGGCTCCTCCCCT 39595 35 100.0 40 ................................... GAGGTCTTGGGGTCGAGCTTGACGACGTCGGTGTAGAAGC 39520 35 100.0 40 ................................... CATCATGGACCGCCATGGCCCCTCGGCCTCAGGCATATGA 39445 35 100.0 37 ................................... GCCTTGCGTCGTAGCTCCTCCAAGCGGGCTACCCACG 39373 35 100.0 39 ................................... GTCATCATCTTGGCCCCTTCTGGGGGCCGCAGGCTCTGA 39299 35 100.0 37 ................................... GAGAGCTTGTCCTGGAGAAGGTGCAGCTTCATGACTC 39227 35 100.0 38 ................................... GATACGGAGAGGGAAGAAGTACATCATGGAAGTGCAGC 39154 35 100.0 39 ................................... AGAGCATGTTTTGGGCGACCGCTCGGCTGAAGCGGCTGG 39080 35 100.0 40 ................................... TCATCCAGCCCGCTCCTCCTGGAGTTGTACTCCAGGATGT 39005 35 100.0 40 ................................... ACCAGGAGGAGGGCAGGAGCATCGAGCTAGCCTGCCCCAT 38930 35 100.0 40 ................................... CCCACTACCTTAGGCCTCTCCTGGATCCCCGTTTCCGGGG 38855 35 100.0 41 ................................... GCGCCCCCCCTATGGGCGCGGGGTGGTGCGCCCCCTATTTG 38779 35 100.0 39 ................................... CTTCACTCCCTCATCGCCGCGGCCCTGCTGCAGGCCCGC 38705 35 100.0 38 ................................... CTCGGGGGCCCTGAGGGCCTTCAAGCTCTCCACTGCGC 38632 35 100.0 37 ................................... TTTCTTCGTCGGTCATGGCCCCCGCACCCGCACCGCG 38560 35 85.7 0 .............................CATCG. | ========== ====== ====== ====== =================================== =========================================== ================== 27 35 99.5 40 GATGCAAACAAAAAGCCCCGCAAGGGGATTGCAAC # Left flank : CTCAACGCTGCCCAGCTCGAGCAGCTCAAAAAGCTGCTGCAAAAGAAGATCGATCCCAGCGAGGATGGTGTGCGCATCTACCCCGTAGGGGGAGCGGTGGAGGTTCTGGGCCTGGGTCGTAGGCTCGAGAACCCCGACTACCTGATCCTCTAGCCCACGAAAAATCCCTTCGCAATCGCACCCATCCCTCATGAAAAACCCGTCCCTGCCTCGTCCTGGAGCACACAAAACCCCTCTCCCAAAACGACCCGTTATGTTTTGCGCAAACTGGTATAATCCCCTTGCCGGGCCTGCTCGGAGTGCACTTTGAAAACGAGTTCTTCCCACTCCTATCGCAAATCCCTGCGATAAAAAATCTAAATGCGCAGGAAAGTAAGCGCCCATCGCTATAAACGTCACTTTTTTCGCAGTTATCCACAGCCTACCTGTGGATAACTCGCTTTTCTCATAAAACTACCCCCTGGGGCACCTGTACAGAACGGTGTTTTTGGGGGTATGCT # Right flank : TCCGCCCAGGTAGGGGCGGACTTTTTCTTGTTAGCATGGCGGCATGGCGGAAGTACGGCAGGTACTGATCGTGACAGTCGGACAAAGCCGCGCGCCGGTGGAGTACGCGCTGACCGAACACGCGCCGGATGGGGTGGTCTTCATCGCTAGCCAGACTTCGCAGGTGGTGGTTGCCGAGCTTGTGCGGGAGTATGGCGGGAGTCTGCGCCATCATACCCTGTTGCTGGATGACCCCGAAAACCTCACCGAGAGCTACCGCGTGGCCCAGAAAGCCCTGCACAAGGCGCTGGAGTGGGAGGCGCGCAGCGTGGTGGCCGACCTTACGGGGGGCACTAAGCCCATGGTGGCGGGGGTGGTGCTGGCGCTGAGCGGGCGGGGGGTGACGTTTAGCTACGTGGGCGGGGAGCAGCGCGATGAGGCCGGGCGGGTCGCCAGCGGAAGCGAGCGCTTGCGTCTGCTGGAAGACCCCACCACCCGCTACGGGGTGCGGGAGTGGTCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAAACAAAAAGCCCCGCAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 57652-60042 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWLA01000003.1 Calidithermus roseus strain NBRC 110900 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================== ================== 57652 29 75.9 83 .C.C.T.....A.C..T......A..... CCAGAGGAGAATCTTGACAATCGGACTCGGGATTCAGACACTTCCGAGGGGTCAGTCGGCTAGTTTTGCCGTTAGAATCAAGT 57764 29 100.0 32 ............................. GGCTGGTCGCATTCCCCTTAATTCGGGAATAA 57825 29 100.0 32 ............................. TGTGCGAGCCACAAAAGGAGGGAGAACCAATG 57886 29 100.0 32 ............................. TCCGGGCGGCGGGTGGGGGGGGGTGACCACTT 57947 29 100.0 32 ............................. GCTTTTGGGGAATTGCTGATCAATATCCTCGA 58008 29 100.0 32 ............................. ATGTGGATGCTCTCGAAATATTGTCGCAGCCA 58069 29 100.0 31 ............................. TCGAACTAGTGGGGCCTCCAGCTCGAGCAGC 58129 29 100.0 32 ............................. GCTACCGGCCACCAAGGCATCGGGGGCCTGCA 58190 29 100.0 32 ............................. CCCTCCGGGCGTAGCATCCCCGCAACCTTCTC 58251 29 100.0 32 ............................. GGGGACTGTACCTCACGGATTATCCCAGAGTC 58312 29 100.0 31 ............................. AGGGGGCGGTGTACGTGGTCTCGAGCCTGGT 58372 29 100.0 31 ............................. ATCACCATGCGGGGCGGGGCAATGCTGCGAG 58432 29 100.0 31 ............................. TTCGCGAAGAACAACCTCCCCCAGAGCGTTC 58492 29 100.0 33 ............................. GGCACGGGCTGGCCTCAAACCCTGCCCCCGAGC 58554 29 100.0 33 ............................. ACCCAGGCGGCGGCGGGCAACAGCGGCACCCCC 58616 29 100.0 31 ............................. CTGCCCTCCGATCTACTGGCCTCCGGGGCCT 58676 29 100.0 32 ............................. GTGCGGGCCGGGCGGGGGCGGCCCCTTATCCC 58737 29 100.0 32 ............................. CGTGCCCACAGGCCGTTATCATTCGAGCCGCT 58798 29 100.0 31 ............................. TACCGCGGCCAGAGTGGCATGGGGCTCGACT 58858 29 100.0 31 ............................. CCTGCGCGTGCACTGGAGTCGGGTGCTTCAC 58918 29 100.0 32 ............................. AGCAGGTAGCCACCGTCCTCGAGCAGCAGCGC 58979 29 96.6 32 ............................T CCTCCGGCTGCAGCACCGGCTTGTAGCCGAGC 59040 29 100.0 31 ............................. TCGCTGTTGGCCGCCGGTCGGCGCTCGAGCG 59100 29 100.0 31 ............................. TCGCCGAAAAGCTGCAGGACCCCGCGGGGGA 59160 29 100.0 32 ............................. ACAGGCACGGCGGCGGCGACCCGAGCGGCGGG 59221 29 100.0 31 ............................. GAAGAGGCTTTGACGGCCATTCTGTCCGACA 59281 29 100.0 32 ............................. CCTGGGCGGTGCCGGGGCGGGGGAGCCCCCCA 59342 29 100.0 32 ............................. GCGCAAGCCAAGCGGGCGGTGGTGGCCTCGCC 59403 29 100.0 32 ............................. CGGGGCGGCAGCATGTACATGGGGCGCACCGA 59464 29 100.0 32 ............................. ACGGCAGCGAACTCGACCTGGCCCGGGTACGC 59525 29 100.0 32 ............................. GCGGCGCGGGTGTGGATGGTTGGGGTCTGGAA 59586 29 100.0 33 ............................. CCAGGCGGGCGCTCAGGCCGAACTCGGCGCGGC 59648 29 96.6 32 ............................A CAGCGGGCGGGAGCGGCACCGCTCCCGCCTTC 59709 29 100.0 32 ............................. GGGAGACAAGCGGGGGCGGTGGGCTGCGTGGT 59770 29 100.0 32 ............................. GATTGCTGCCCTTGCCGGGCTTCCTGGAGGAT 59831 29 96.6 32 ............................C CCCGCGATCTGACAGTTCGTTTCGACAGCTAC 59892 29 100.0 32 ............................. TGTTGTTCTTCGCCACGTTCAACCCGGTCTTC 59953 29 100.0 32 ............................. ACAAGCGGGATGACCGCTGGAACTACTTCGAG 60014 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= =================================================================================== ================== 39 29 99.0 33 GTGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : GAATCTGAGGTGGGGGTCGAGCGCAGGGTGCGCCATGCCTTGCGCGAGCGGTTGCGCGAGGTGCGACTGCTCGAGCGCATCGTCTCCGACCTGCACAGCCTTTTCGACGCCATCGACGTCCCCGACCCCTACGCCGCCGACCCTGCGGCTCCGGGCGAACTGTGGGATCCCGAGGGCCCGGTTCCCGGAGGGGTAGCCTATGGTAGTGATCGTCCTGGAGAAGGTGCCCAAGACCCTAAGGGGTGAGCTTTCGCGCTGGATGCTCGAGGTGAGCACCGGCGTATTCGTGGGGAGCGTTTCGGCCATCGTGCGCGATCTCCTGTGGGAAAAGTGCATCGCCAAGAAGACCGCCGGTCGCTGCTGCCAGCTCTACCGCACCAACAACGAGCAGGGTTTTGCCATCCGCACCCACGGCGACACCACCCGCACCCTCGTAGACCTGGACGGCTTGACTCTGGTGGCCGTTCAGAACGCCGAATGGGAGCGCTTGCACAAAAAGC # Right flank : TCCATGCGCTTGGTGGCCGGGATGTTGGTCAGGGCCAGATTGATCAGTTCGACAATCCAGCCTTCCTCATTGGCGTAAAAGGCCGGGCTGAAGTAGCGATATTCCCTGGCTTGCAGCAGTTCCCGGGCCCGCTGGGTCCACTCCACCCGCACCGCCCACAGCCCGTCCTCGCGCAGCTCGAGGTCGAACCAGCCCGCCGCCGGCACCGGGCCGTTGGCCACCGGGTCCAGGGCCTGATGTTCATAGTCAATCGAAAGGCGGTTGCCGTACTCCTGCCAGGCCGCCATCACCCGTTGGCCGGCTTCCGGGTTGAAGAGGAAGAGGCCCTTGGTGGTCTCTATCGACCCGAAGGGAAAGATGCGAAACTCCCCAGGAGGGCCCTGGGGAAGCTCGAGGGTCAGCTTGTGGGGTTGGCGCATGTGTTCTCCATCCCAAACGAAAAACCCCCACCGGAGTGGAGGTGCAGTTTGGCTAGATTAGCGTTATGTTAGCACAAAGCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9783-10952 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWLA01000043.1 Calidithermus roseus strain NBRC 110900 contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 9783 35 100.0 37 ................................... CTGAAGGGCCTCTACGGCGGCTGCGCAGGCCCTGCGG 9855 35 100.0 41 ................................... GACGGCCCTGCGCCGCAGCGCAGGGGCCAGCAGCGCCCTAA 9931 35 100.0 41 ................................... GACGGCCCTGCGCCGCAGCGCAGGGGCCAGCAGCGCCCTAA 10007 35 100.0 41 ................................... CGGGCTTCAAGCTATTCGCCTATGAGTACATCGATTACGAG 10083 35 100.0 39 ................................... CTTTGCCATTCCTCCTCCTTTCCTTGGGCGCTCCCTCTG 10157 35 100.0 41 ................................... TCGGAGGCGGCTAGTGCTACCACCTCCTCGTCGCTCATGGT 10233 35 100.0 42 ................................... GCACCTCAGTGAGGAAGTCGGACTTCTGGGATTTTGCCATTT 10310 35 100.0 39 ................................... ACCTCCATTACCATCATCTTGGCCCCTTCTGGGGGCTTC 10384 35 100.0 42 ................................... TTGGGTATTCCTGGGAGTGGGGACTAGCCCCAACGGACTCCC 10461 35 100.0 42 ................................... GCTACGACGCTGCCGCCTTGCGTCGCAGCTCCTCCAATCGGG 10538 35 100.0 39 ................................... ACTCCAGGATAGCTTTGATTGGCTCCTTTCGCCCATTGC 10612 35 100.0 44 ................................... ATGGTGGTTCCACTCCATGGTGTCACCACCGTAGAAGATGGTTG 10691 35 100.0 41 ................................... CCTAGCCCTGGGGCAGCCTGCGCCTAGGTGTGCATGTGCCT 10767 35 100.0 38 ................................... GTGAATTCCCGGATATTCCAGCCGGTCACAGCCCCGGC 10840 35 100.0 43 ................................... CCCCGAATCGTTGTACCCCTGGGCCGCCTGGCCGTCATGCAGC 10918 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 16 35 100.0 41 GATGCAAACAAAAAGCCCCGCAAGGGGATTGCAAC # Left flank : CCAGGGTTGAACTCGATCCCCCTGCACTGCTTCGGCTCGAGCCGTTCAAGCAGCTCTTACAGAAGATGGCGTCCGCATCTCCCTTGTGGGGGAGCGGTGGAGGTTCTGGGCCTGGGTCGTAGGCTCGAGAACCCCGACTACCTGATCCTCTAGCCCACGAAAAATCCCTTCGCAATCGCACCCATCCCTCATGAAAAACCCGTCCCTGCCTCGTCCTGGAGCACACAAAACCCCTCTCCCAAAACGACCCGTTATGTTTTGCGCAAACTGGTATAATCCCCTTGCCGGGCCTGCTCGGAGTGCACTTTGAAAACGAGTTCTTCCCACTCCTATCGCAAATCCCTGCGATAAAAAATCTAAATGCGCAGGAAAGTAAGCGCCCGTCGCTATAAACGTCACTTTTTTCGCAGTTATCCACAGCCTACCTGTGGATAACTCGCTTTTCTCATAAAACTACCCCCTGGGGCACCTGTACAGAACGGTGTTTTTGGGGGTATGCT # Right flank : CATAGTCAGGCGGTGTCGAATCCTAGCGCTGTATTGGAGAGGCATGAGCCCTGAGCTAAGCGAGGTAAAGGGTCACCTAATCGGCGCAAATCTCCCTTCAGTACGCTGGGCTCATGAAGAACATCCTGGCCATTGTGGCTCTGGTGCTGTGTAGCCTGGGCCTGGCCCAGAACAAAGTAGACGAGAAGCTCCGGCAACGGCTGGCCCAGGGCGGCACCGTCGAAGTCATCGTGGAGATGGAGGCAGGGGGGCTGTCTCCCGGTCAGACCCGGCAGAGCCTCCTGAGAGGGCTCAAGCAACAGCTCGAGGTGCAGAAACTCAAGCTCAGGGTCAGGCCCCTCAAGGGTTTCTGGCTTAACCAGAGCTTCCTGGTGCGCCTGCCGGCCAACGCCGTGGCCGCGCTGGCCAACACTCCGGGCGTCCGGCGGGTTTACGAGAACCGCCGGGTGCAACTGCCCAGGCCCCGGATCCAGGGCAGCAGCGTGCCGGAGGGCTCGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAAACAAAAAGCCCCGCAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 25322-24137 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWLA01000021.1 Calidithermus roseus strain NBRC 110900 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25321 29 100.0 31 ............................. GGAGACCAGGACCATAACCCTCAGAGTAAAC 25261 29 100.0 32 ............................. GAAGGGCGAAGGTCCTCAGGGGCTATTCCCCA 25200 29 100.0 32 ............................. GCTTAGCCAAAGCTCCTCTTCTAGCCCCCCCC 25139 29 100.0 31 ............................. CCTGGGCGGTGCCGGGGCGGGGGAGCCCCCC 25079 29 100.0 32 ............................. CCCCAACCCGCGTGGTAGACGGGCTTGTCGGG 25018 29 100.0 31 ............................. GGCGCCCAGGACGCGGGCGGTCGCCTTAACC 24958 29 100.0 32 ............................. GCCTCGAGCAGGTCCATCAGCAGATTGAAAGC 24897 29 100.0 32 ............................. AGCGTTCCGAATCTAATAGAGATCGCGGGAAC 24836 29 100.0 32 ............................. CGCTGGATCGAGCACGCCCGCACCGCCACCGC 24775 29 100.0 32 ............................. GAAGTCATGGCCGCTCTGGCGGAGCCCTTCGC 24714 29 100.0 32 ............................. GTCATCTGTTCCTCCACGAAATGCGCCCCGTA 24653 29 100.0 32 ............................. TCACCGCCAAGCTCTTCCCTGGGGGGGGCAAC 24592 29 100.0 32 ............................. CAAGCTGCGCTCCCGGATACTCCAAAGCGCTG 24531 29 100.0 32 ............................. TAGCCACAGACCCCTGCTCCAGAATTCTCCAA 24470 29 100.0 32 ............................. CGGCAGCCGCATTCGGTCTAACTCGTTCTGCA 24409 29 100.0 32 ............................. GAGCCACCTTCCCCTCCCCCCACAGGGGCTGC 24348 29 100.0 32 ............................. GTCGTTCGCTCGGTCACCCGTAGCCGCCCCCG 24287 29 100.0 32 ............................. ATGTGAGCGATGCCCTGAAGGAGCGGGGCATC 24226 29 96.6 31 ............................C TGTGGCGCGGGCTCGGCGGTGCGGCCCGGCA 24166 29 86.2 0 .........G............C.T...C | T [24140] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.1 32 GTGTTCCCCACGCACGCGGGGATGAACCG # Left flank : CGGTCTATCTGTGGTGTGTCTGGAACTTTGCAGCCAGGGGGCAGGGCACCCCGGCCCCCATCGACCCGCCCAAAACGCTGGTGGTACAGGGGCTTTATCGCTGGGTGCGCAACCCCATGTACATGGGGATCGGGCTGGTGCTGATGGGCGAAACCCTGCTTTTCGGCTCCGGAAGCCTGCTGCTGTACACCCTGCTGGTCCTGCTGACCTGCCACCTCTTCGTGATCCTCTACGAAGAACCCACCCTGCGGCGGCGCTTTGGCCAAGCCTACGAGGATTACTGCCGCACCGTCCCCCGCTGGGTTCCCCGCTTCAAAAAACAACCTTGAGTGCCGCGATTCAAACTCACCTGTCCCACCGGGAATGCCCGACCTTGTGACTCTGAGCGCCCGCCCCGATGCTAGGATGGATCCATCAACCCAAAGGGTTGGCGATACTTGAAAATCGGCTCGAGACACATCAAGGGGGTCAAGGGGCAATTTTTCTCGCTAGAATCAAGT # Right flank : GCCTAAATCACCCCCGTAGGCACCAAGTACCAGTACGCCTTGTTGAAGGCCATCTTCTCGTAGTGGTAGAGCCAGCTCGGGGCTGGGGGGTTGGGCGGGGTGTCGTAGTCGAAGGCCAGGATGCTGGCTTTTTCGTAGCCGGACTCGAGGAAGCACGTCACCTTGCCGTGGTAGGCCGCGTGGCGGGGGTCTACCTCGCGACCCTGGATGGCGGCGGCGATGCGCTCGGCGATCACGGGGGCCTCGAAGTGAGCGGTGGAGCCAGCCTTGGAGATGGGCAGGTCGGTGGTGTCGCCCAGGGCGTAGACGTTGGGGAAGCCGGGCACCTGGAGGGTGCTGCGGTCGGTCTTGACCCAGCCTTGTGCGTCGGCGATGAGGGAGTTCTCGAGGAACTTCGCGCCCCGGTGCGGTGGGATCATCACCAGCAGGTCGTAGGGTAGTTCGGTGCCCTCGAGGCTGTAGGCGATCTTCTTTTGGGGGTCCACGGACTCGAGGTTGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24552-23368 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWLA01000006.1 Calidithermus roseus strain NBRC 110900 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 24551 36 100.0 36 .................................... GTGTCAATACCACCGGTAGTTATTTCTTTGCTACCC 24479 36 100.0 35 .................................... ATCCCAAATGGGCCCGCATAGATGCGGGCTTTTTA 24408 36 100.0 36 .................................... GTCTCGAATGACCTTCCACGCCTGGTAGGCGGCCTC 24336 36 100.0 36 .................................... AAAAACGCCGAAGCCGAAGCCGAGCTAGCCAGTGTC 24264 36 100.0 34 .................................... CAGCAACTCGAGGCGCACCGCCTCGTTCAGGGCC 24194 36 100.0 36 .................................... GGATCAGAGGGGCAATGAACTGGTCGTAGCGCAATG 24122 36 100.0 35 .................................... GCCATCCAGGTAGCAAAGGCGGAACTGGCTGATCA 24051 36 100.0 36 .................................... CTTACTGATCCCACCAACCCCGATAGTCAGCAGGCA 23979 36 100.0 38 .................................... GCGGAAAGACCCGCTATCGTCAGCGCCGTTCTCAACGC 23905 36 100.0 37 .................................... TGGCTAGTTTCTGGGCGGCGGCCAGCACCACGGCGGC 23832 36 100.0 35 .................................... TCAGTATCCCCCCTGGAACCCCAACCCCTACGTGA 23761 36 100.0 36 .................................... GTCATACCTCCCCCCTCCCCTCGCAGCGCCCACAGG 23689 36 100.0 36 .................................... TACGTTTAACCACCTGGCCTGCACTATCTGCATCAA 23617 36 100.0 35 .................................... CTGTTACGAAACCAGAGGATCACAGTCATGATCTC 23546 36 100.0 35 .................................... CTATCGGGGGTCAACACCGCGATAGCACCCGATCC 23475 36 100.0 36 .................................... GTACAGCGCGGAGCGCCAGTAAAATTTGGTGTGGTC 23403 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 17 36 100.0 36 GTTGCAAAGCCGATAAGCCTCGTAGAGGATTGAAAC # Left flank : TACGACACCCCCTCGGACTCGAGGCGGGCCAAGCTCGCCAAGCTCCTCAAGGGCTTTGGTGAGCGGCGGCAGTACTCGGTCTTCGAGGCTCGCCTCACCCGCGAACAGTGGGCCCATCTCAAGGGGCGGCTGGAGCAGTTCGTAGACCAAAAGGAGGACGTTCTGGCGGTCTACTTCCTGCCTCCCGAGACAGTAGGCCGCACCTACCGCATCGGTCACGAGGCCCTGAAGCGCCTCGAGGACCCCGACTTTGTCTAGCCAGCGAGCACGAAGGCCACCTTATACAGGCCCCCGGTGCCCTACCGGGGTTTTTCCCACACAGGCAGGGCAAAAGAACCTCCTGTATATGTCTCCCCAAGTCTCATCGCATGCGTACGGCTCCAGAAAGGCAGAATTCCCTCCTTCTATCCCACGCCTTTCCTATCTGTGGCTGAATAGAGCCCCCGCGTGCGTAAATGACCTTAACAGGCCCGGCCTCGCCGTGCTATGTTGAGGGTGGC # Right flank : CTGGGGTTGGGGCAAATAGAAAAAGACGCGGTCAGAAAACCGCGTCCTAGACTGGAGCCGGTGGTCGGATTTGAACCGACGACCGCTCGATTACGAATCGAGTGCTCTACCGCTGAGCTACACCGGCCCGCAGACAGCTATGTTAGTCGGTTTTGCTCCGTGGGGCAAGTGTGGTGGCTTGACGCGCGCTGCCCTGAAGGGGGATGCTGTGGGCTGCCGTGAATCCTCCTCCTGATACCAAGAGCAGCCGCAAAGACGGTCGCGACGCCTTGCAGATGCGCCCGCTCAAGCTCGAGCTGGGCTACAGCGCCTATGCCGAAGGCTCAGCCCTGGTCGAGCTGGGCCTGACCCGCGTGCTGGTGACGGTCTCGCTCACCGATGGCGTTCCGCGCCACGTCTCGGCCAAGGAAGGTTGGCTGATGGCCGAGTACAACCTGCTGCCCCGCTCGACCAAGGAACGCAAGGAGCGCGAGCGCCAGAAGCTCTCCGGGCGCACCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAGCCGATAAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 2 36816-37424 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWLA01000006.1 Calidithermus roseus strain NBRC 110900 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 36816 36 100.0 35 .................................... CCTCATGGGCGCACCCCCCCCGCCAACTGGGCGAT 36887 36 100.0 35 .................................... AAACTGTCCAACTCCAACAAGGCATTTTTACGGGA 36958 36 100.0 35 .................................... CTCTCGATAACCTCACCGCCCTGCTAATGGACAGC 37029 36 100.0 36 .................................... GGGGTGGGCTGGGCCTGGGGCTTGGAGTCGGGACGG 37101 36 100.0 37 .................................... AGCACCCCCCGGCCCTGCCCCTCCTGCTCCGGCTCGG 37174 36 100.0 35 .................................... GCAACGTGACCCCCGCCACGCGCACCGAGTGCCTG 37245 36 100.0 36 .................................... ATGACCTTGCGCGCCTCATAGAGCTTACTCCCTATG 37317 36 100.0 36 .................................... TGCCCCCTCGACCCGGGCCCCCTCTAGGAGCGCCAG 37389 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 100.0 36 GTTGCAGGAACTGAAAGCCTCGTAGAGGATTGAAAC # Left flank : TTCGAGCTGGATCTGGAACTCGCGGCTTTCAAGAACCTGCGCTTCCATCGCATCCAGGCCGGGAAAGGCTTCTTCCCAGGGTTCACCGGGGAGGTGACCCTAAAGCTCCACAGCGATAGCCTCGAGGTCCAGGAGGCCTTTGGTCAGCTCACCACTCTGGCTTTCTACAGCGGCGTAGGAGCTAAGACCCCGTATGGCATGGGTGTTGCCAGGGTGCAACCCTTCCCCCAGGGCTAGGCCGAACTCAGTTGCCCCAAGTCGGTCTTGCGCACGCGAAGGCCACTTATGCACCCCCTTGATTCGATTTGTGACCCTACCCGTTCTGAAGGGGCTTACACCAGTGCATAGCTGCACACAACAGCCTATCGCATGCGAACTCGTGTAGATCGAAACAAACTGCGCTCCTGGTTTGACCTGAAACCTCGGTCACCATGAATAATGAGCCGCGTGCGAAAATAGGGTTGACATACGGCTTGTAGGGCTCAATGATGATCAGGGCT # Right flank : CATATGATCCGACAGAAACTCCCCGAGGTTCAGGAATTCCTGCGCGAGGCCGGGATTGACGGCTGGCTGGTGTACGACTTCCGGGGCACCAACCCCTTCGCCGCCAGGGTGTTTGACCACGGGGGCAACCTCCTCACCCGGCGCTGGTTCTTGTGGATACCGGCTCGAGGCGAGCCCCAGGTGCTGGTACACGACATCGAGTTCGGCTCCTTCCCGCGGGTGGGTTACGCGCTGCACAAATACAACAGCCGGCAGACCCTGCCCCAGGAACTGCGCAAGCTGCTCGCGGGAGCCCGGAGGGTGGCCATGGAGTACTCCCCCAACGGCAATATCCCCTATGTCTCCAGGGTGGACGGCGGGACCCTCGAGCTCATCCGCTCGCTGGGGGTGGAGGTGGTGAGCTCAGGCGACGTGCTGCAGCTTTTCCTGACCTGGACCCCTGAGCAACTGGCCAACCACCGCAAGGCCGCCGAGGTGCTCACCCGGTGCAAGGACGCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGAACTGAAAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //