Array 1 161545-161124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOWJ01000007.1 Listeria monocytogenes strain FSL N3-0993 contig000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 161544 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 161478 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 161414 29 100.0 36 ............................. CAACTTGAAACCTAGTCTGATAACATAATCAACAAT 161349 29 100.0 36 ............................. ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT 161284 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 161218 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [161194] 161152 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 93.1 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACTGGGGATCGACAGAAAGTTGTAAATGTTTGGGGGAAGGGGAATTTGGCGGTTTTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCGTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : GAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTACAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATTAGCGAGATAGAAATTT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6625-4937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOWJ01000008.1 Listeria monocytogenes strain FSL N3-0993 contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6624 36 100.0 30 .................................... TTATCATACATTAGCCACTATCAGAACAGT 6558 36 100.0 30 .................................... TTTATTTAGTATTGTGTTGCAACACAAAGC 6492 36 100.0 30 .................................... TGTGGCGGTTGGGTCTTGGTGTCGGTTTTA 6426 36 100.0 30 .................................... TTAAGTCGACCACTTTTTCCCGCTCTGTGA 6360 36 100.0 30 .................................... GAAGATGAGAAGCGTTCCAAGTTACAAACA 6294 36 100.0 30 .................................... CAAACAAGCTAAGGCCCTGAATAGTATTGA 6228 36 100.0 30 .................................... TCAAGTATCAGCTACAACATATCTAAGTTT 6162 36 100.0 30 .................................... TAAGATATGCACTTGAAATGAATCTCCGCA 6096 36 100.0 30 .................................... AGAAGTTACGTAAAGAAATGATTGACTATG 6030 36 100.0 30 .................................... AATCAGTTAGGGGATATATTTATCATTCGA 5964 36 100.0 31 .................................... TATCTCCTTTCTTCAAAGCCACATAGCAGTA 5897 36 100.0 30 .................................... GGAAAAATTAGAATTAACTACATCTAAAAA 5831 36 100.0 30 .................................... ATTCCTGTAGTCATCAGTGTTCCAGTAGAT 5765 36 100.0 30 .................................... TCAATGCCTCGCAAGCTGCCGTAGTACGCT 5699 36 100.0 31 .................................... AGAGTCAGCAGAGTTACGGGTCTTACAATTG 5632 36 100.0 30 .................................... AAATTCATGTGCGAATAAATAGGTGCTTTC 5566 36 100.0 30 .................................... GAACAATTATAGATTGGTTCGGTTCAAGGA 5500 36 97.2 30 ................T................... ATAATGTTGCTAAAATTAATAAAACGGCTA 5434 36 100.0 30 .................................... TAAGAGAGTCAAGGCTTCCAAGTTTCGTGT 5368 36 100.0 30 .................................... TCTTTGGGATTTTTCTACAAATGTGTGTCC 5302 36 100.0 30 .................................... AACACTAGTCGAAGTAGAAGGCTTCCAATA 5236 36 100.0 30 .................................... TTTGGGTACGCATAGTATGCGAAAAACCTT 5170 36 100.0 30 .................................... TCAAGCCGCATTCAATCAAAGTATTCAAAC 5104 36 100.0 30 .................................... GAAAACTTTGTGGATCGTGCAGAAAAAATA 5038 36 100.0 30 .................................... CAAGAAGAGGGAAAGCTTAAGTATCCATTT 4972 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : TAATATTCTCCCCCCATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACCGCCTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCTATTTTAATTAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAATAAAATAAAACGAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGACTTCCAAATCCAAGAAACCTCACCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGCCCACAGAGAGTTTTTTCTTTTCTCAAAAAAATAAACTCAAATCCCTTGCCTTGGTGTGAACTCCAGGGTTTATAATTCTATATGTAAAGAACGAAACGAGGTGATGGAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //