Array 1 42229-38234 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEDG01000086.1 Streptococcus suis strain LS0L, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 42228 36 100.0 30 .................................... ACAATCAAACTAAGGCTGAGATTGCCTTGT 42162 36 100.0 30 .................................... TATCAGCTTTCCAATGTTTCCCTTGACTAT 42096 36 100.0 30 .................................... ACGAGATAACGGCTATTTAATCAGTCGTAG 42030 36 100.0 30 .................................... TTGCTTACCTTCGTTTCTATCTTCCAATAT 41964 36 100.0 30 .................................... GTAACTGCAAGGGTTTAGACCATCAAAAGA 41898 36 100.0 30 .................................... CTGCATTATATTCTTCTGCATCAAATGCCT 41832 36 100.0 30 .................................... TTGTCAAATGTGACTGTTGTAGATGTAGCT 41766 36 100.0 30 .................................... AGAAGATGCAAAGAGATACCCACCACATAT 41700 36 100.0 30 .................................... GTGCGAACATGATTGCAGTTGACGCCTATT 41634 36 100.0 30 .................................... CTACGAGCCAGTTCGAATTCACTGAAACTA 41568 36 100.0 30 .................................... GGCAGTGGTGGAAATCCTATTGCGACTGTT 41502 36 100.0 30 .................................... AATCTTCTATTACATTAGACTTGGGCGGTC 41436 36 100.0 30 .................................... TTCAAGAAGTGAACCTGTGAAATAACTTTC 41370 36 100.0 30 .................................... AAGGTCAAGCGTAGTAGATACTCTGGAACA 41304 36 100.0 30 .................................... TCTTTTTCAGAGTTGATTGTGTGTTCCACT 41238 36 100.0 30 .................................... CTTGGTCCTTGCGGAGCAGGTCAAAAGCCT 41172 36 100.0 30 .................................... CTAATTGCCGACCCAACCGCAATGATGGCT 41106 36 100.0 30 .................................... CGTCTGAGTATTTTTAATTTATAAAGCAGA 41040 36 100.0 30 .................................... TGATTGGTCAACCTATCGAAGTTAACGAGT 40974 36 100.0 30 .................................... ATTCACAAAATTATCAATACTTATCTGCAT 40908 36 100.0 30 .................................... TTTGATAATTCCATTAGATATATAGAAACA 40842 36 100.0 30 .................................... TGACTAGCCACCAAGTCTCTAACAAACGTT 40776 36 100.0 30 .................................... TAAGGTTAAAAATTCTCGTGAGTTCTACAT 40710 36 100.0 30 .................................... AGAACGACCAGCAGAAATGCGACTTGATGA 40644 36 100.0 30 .................................... TATTGATTTGTTAAATAGTGCAAAAGCGCA 40578 36 100.0 30 .................................... TCGCCTGCTGTTACGATTTCCAACCCGTGT 40512 36 100.0 30 .................................... ACTCATTTGCTGAAAGCCCTGCTGTCTTAT 40446 36 100.0 30 .................................... GCGGGTCTTGGCATGGTGGCGCAAGCGCCA 40380 36 100.0 30 .................................... TGGGCGAAATGACAAGTTGGCCAGTTTTGT 40314 36 100.0 31 .................................... GGAGGAAGTTGAATGAAAGAAATGGATCCGT 40247 36 100.0 30 .................................... GTAACGAAATACAGCTCCGCAAGCCCCGTC 40181 36 100.0 30 .................................... CACAGGAAAGATGTGATGAATCATTTCAGC 40115 36 100.0 30 .................................... CTGTCTTAAAGCTAGGATTGTCAGGATCAT 40049 36 100.0 30 .................................... TGTACACTTGATTTCGTGGTACAAAATGGT 39983 36 100.0 30 .................................... GATGAAACAAGGACAGGCAGCTCGTTACGC 39917 36 100.0 30 .................................... ATGTATACGAAGACCTTTAATGTTCTTCTT 39851 36 100.0 30 .................................... GATACCGAGTTTGTGAGCTTTCAAAGTCAC 39785 36 100.0 30 .................................... CAAAAATTCAGGCGAAACATCAACATTCTT 39719 36 100.0 30 .................................... AACGTAAATAAGGAGCTTATAGAGTGTATA 39653 36 100.0 30 .................................... TGCTCTATTGTTCTTCTGGTGCTGGTTCTT 39587 36 100.0 29 .................................... GTAAACACGTGAGAAGCGTTGATACATAA 39522 36 100.0 30 .................................... AGCCTTTCCAATTTTCTAAACATTGACATT 39456 36 100.0 30 .................................... AAGCGAGAATTAGACAACCATTGACGGTCT 39390 36 100.0 30 .................................... TGATGTGCGTCAATCGACCATCGATTCTGT 39324 36 100.0 30 .................................... ACAATCAAACTAAGTCTGAGATAGCCTTAT 39258 36 100.0 30 .................................... TTCTATTTTTTGACGGGGTCGCTGATAACT 39192 36 100.0 30 .................................... TCTACTGAATATGCATCGGATGACACTCAC 39126 36 100.0 30 .................................... TAGTTGAGAATGACGAACTCACCGAAGAAA 39060 36 100.0 30 .................................... TTAACTATGTTTTGAACAAGCCTAACTACT 38994 36 100.0 30 .................................... TAACTTTATTTAGTAACGTTTATAACAGTT 38928 36 100.0 30 .................................... AGTGCTTGAGACGAATACGGAGGATGAATA 38862 36 100.0 30 .................................... CTACCGCTATCTGTACCTTGGCCACGCTAT 38796 36 100.0 30 .................................... GAACTCGAACGAATTCCGTGAGACATACCT 38730 36 100.0 30 .................................... ATGAACGATTGAATGAAATTGATGTCACAC 38664 36 100.0 30 .................................... CTGCAATTCGTTCATAACGCCACTGCGAGG 38598 36 100.0 29 .................................... AGCGAGGTGCTCAGCAAGTAGATAAGGAG 38533 36 100.0 30 .................................... ATAAAAAATTGATTTTTCTCCTAAAGCTGT 38467 36 100.0 30 .................................... CGAAGGCATGGCCTTGATTTATCAAAGATT 38401 36 100.0 30 .................................... AGGTGTGTAGAAAATTCTGCTGAAATAACT 38335 36 100.0 30 .................................... ATAGCATCAAATATAAAAGCACGACCTGAT 38269 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 61 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTACTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTATTGTCCCACCCTCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTAGGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //