Array 1 2642-2477 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797021.1 Neisseria sp. HMSC077D05 Scaffold813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 2641 33 84.8 33 NNNNN............................ GCTGAAAAAAGCTGACGATGGTCGTGGCGATGA 2575 33 97.0 33 A................................ CATAAATTGGGTTGTTAAACAGTATGGTCAGTA 2509 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 3 33 93.9 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAAGCGTTTGCACCGATTTTGAGGCACAACTAGTGGAATTTGACGGTGAAAATGACCATGTTCATTTGCTTGTAAACTATCCACCCAAAGTGTCTATTTCAAAACTCGTGAACAGCTTGAAAGGTGTATCTAGTCGTATGATTAGGCAAAAAAATTATCCCAGTATTCGTGAGAAACTTTGGGGTGGTGCGTTGTGGTCGCCGTCTTATTTTGCAGGTAGTTGTGGCGGTGCACCTATTTCCATTATTCGGCAATATATTGAGCAGCAAAATACGCCTGACTGAAATTGAACGTTTTTAGGACTGCTTCGCAGTCCTCGCCTGATATCTCCGCCGTAAACGGCGAAGTTTTACGGCGCATTCGGATAAAATGTTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CATGCCCATTTCTTTGGCGCATCTAACCCCGTCCCAGCCGCCTTCGGGCGGCTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTAAAATATGACGCCTAACCATAGGCATATCGGGGCCAGCCGCCTTCAGGCGGCTATATATCAGTACAACTCAGAGATTTCTTACAACAAAGGTCGTCTGAAAACCTTATCAATCGGTTTTCAGACGACCTTTTTCAGCCATCAACATAAGCCCGATACTTTGGAATAGGCTATGGGCATCAGACAGATAGGTCAGCCGATTCGGGCATCAGAATTTCACACCTTTATGCAAGGCTACGATGCCTGCACTCATATTATGGTAATCAACGCTGTCGAAACCGGCATCCAGCATCATTTGTTTCAATGTTTCCTGGTCG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 910-677 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797078.1 Neisseria sp. HMSC077D05 Scaffold1577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 909 33 90.9 33 NNN.............................. AATGCCTAACTGAACTTTAGCTTGGTCGGAAAC 843 33 100.0 35 ................................. CGCTGTAAATATTGGGTCGGCAGCTTGTGGGTAGC 775 33 100.0 33 ................................. TACAAATTTCTTTTACGCGCCCCTTCAAATCCC 709 33 90.9 0 G..............................NN | ========== ====== ====== ====== ================================= =================================== ================== 4 33 95.4 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACACAGCCGCCCGAAGGCGGCTGGTTTGCTAGCTAATTCCTTTTTCCGACCAAGTACGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGTCAGTTGGTTTGTCTTTAAGCGGCAAATAGTAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGCGAGACATCCCGAAGGATTGGATGCGCGCCAAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGACAGGAAGCCTAAATATTGGAATGGCTCATACCAGTTTCAACACACAGCCGCCCGAAGGCGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACACAGCCGCCCGAAGGCGGCTGGGCCGAGCCAAGAGGCTGAAAAGCTGGGAAAGTCCGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGTCAGTTGGTTTGTCTTTAAGCGGCAAATAGTAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGTCGGGCAAACTTTCGAAAATAGAGGTTTCAGTAGTTTCAACACACAGCCGCCCGAAGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAACACACAGCCGCCCGAAGGCGGCTGGCCATTTTTCATGACGGCATTAATGTACATTTCTTTGTTTCAACACACAGCCG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1005-1235 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797078.1 Neisseria sp. HMSC077D05 Scaffold1577, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 1005 35 88.6 31 NN...............................GG TATGAGCCATTCCAATATTTAGGCTTCCTGT 1071 35 100.0 30 ................................... GGCGCGCATCCAATCCTTCGGGATGTCTCG 1136 35 94.3 30 .................................AC TATTTGCCGCTTAAAGACAAACCAACTGAC 1201 35 94.3 0 ................................G.A | ========== ====== ====== ====== =================================== =============================== ================== 4 35 94.3 31 CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTT # Left flank : GTGTGTTGAAACGGACTTTCCCAGCTTTTCAGCCTCTTGGCTCGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAACACACAGCCGCCCGAAGGCGGCTGGCGGGATTTGAAGGGGCGCGTAAAAGAAATTTGTAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGGCTACCCACAAGCTGCCGACCCAATATTTACAGCGGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGGTTTCCGACCAAGCTAAAGTTCAGTTAGGCATTGTTTCAACACACAGCCGCCCGAAGGCGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACTTGGTCGGAAAAAGGAATTAGCTAGCAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACACAGCCGCCCGAAGGCGGCTGGGCTGTTTAGCATTTCACAATCTCTTATCTTACTTTAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGTCAGTTGGTTTGTCTTTAAGCGGCAAATAGTAGTTTTTGGCAAAAGCCGAGTTCGGGATAGAGCTGTTTCAATACACAGCCGCCCGAAGGCGGCTGGTTTTTCCTTTCGGGCTTGCGTTTAATTGATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGC # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 3 1589-1389 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797078.1 Neisseria sp. HMSC077D05 Scaffold1577, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================================================ ================== 1588 34 91.2 64 A........................A.......A GCTCTATCCCGAACTCGGCTTTTGCCAAAAACTACTATTTGCCGCTTAAAGACAAACCAACTGA 1490 34 100.0 34 .................................. AAAGTAAGATAAGAGATTGTGAAATGCTAAACAG 1422 34 85.3 0 .............................NNNNN | ========== ====== ====== ====== ================================== ================================================================ ================== 3 34 92.2 50 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACACAGCCGCCCGAAGGCGGCTGGAGCCGCCTGATTTATCAAGCGGCTTTTTTAAAACGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGCGAATCATATCTACTGATACACCTTTATACATGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGTCGCCCCGCCGCGAAATGCGACGCCCGAAAAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGCCGCCTGAACCGTGATTTTACAGGCCGCTTCGGAACAGTTTCAACACACAGCCGCCCGAAGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATCAATTAAACGCAAGCCCGAAAGGAAAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACACAGCCGCCCGAAGGCGGCTGGTTTGCTAGCTAATTCCTTTTTCCGACCAAGTACGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGTCAGTTGGTTTGTCTTTAAGCGGCAAATAGTAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGCGAGACATCCCGAAGGATTGGATGCGCGCCAAAGTTTCAACACACAGCCGCCCGAAGGCGGCTGGACAGGAAGCCTAAATATTGGAATGGCTCATACCAGTTTCAACACACAGCCGCCCGAAGGCGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCT # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-1.59, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2560-2789 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797078.1 Neisseria sp. HMSC077D05 Scaffold1577, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 2560 33 100.0 33 ................................. GTGTAGCACCAGCAAGTCTAATCAGGGTTACGG 2626 33 100.0 33 ................................. TTGACGAAGTATTGAATCCGCCTCCTGCTGCCG 2692 33 97.0 32 T................................ GTTTTCTGATGGGGTTTTTCGCGGTTTTATCG 2757 33 84.8 0 C............................NNNN | ========== ====== ====== ====== ================================= ================================= ================== 4 33 95.5 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACCTTATGGTCGGAATTTGGCACAATTAGAAGAGGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTGTGAAATGGGGATGGGTTCCTAAACACAAGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGATTAAAAAGCAGTACACAGAAAATCCTTATTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCCAGCAATCGACATTGTTGCTGTTAATTCAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGATGTCGTGCAGCGAGTAAATACGAACACCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTTTTGGCTCAAGCATTTCTTTCGTCAGGTTTCCAGCCGCCTTCGGGCGGCTGTGTGATAAAAAGAAAACCCGCCGAATAATCGACGGGTTTTCGTATGGTGGCGGAGTAAGAGGGATTCGAACCCTCGATGCAGGTTGACCCCACATGCTTCCTTAGCAGGGAAGTGCCTTCAGCCTCTCAGCCATTACTCCTAAGGAAGTGCGTAATATACTGGTTTGACTCGGACGTGTCAAGCCGAGCCTGAGGGTATTTTTTAACCGTATGAAATCATTTGTATAAAATATAAAGAAGCGTGAAATTGTAGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2881-3045 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797078.1 Neisseria sp. HMSC077D05 Scaffold1577, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 2881 33 84.8 33 NNNNN............................ TTGATGTCGTGCAGCGAGTAAATACGAACACCT 2947 33 100.0 33 ................................. TATTTTTGGCTCAAGCATTTCTTTCGTCAGGTT 3013 33 90.9 0 ..........................A.A...A | ========== ====== ====== ====== ================================= ================================= ================== 3 33 91.9 34 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCCAGCAATCGACATTGTTGCTGTTAATTCAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTGTAGCACCAGCAAGTCTAATCAGGGTTACGGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGACGAAGTATTGAATCCGCCTCCTGCTGCCGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTTTTCTGATGGGGTTTTTCGCGGTTTTATCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGAAAACCCGCCGAATAATCGACGGGTTTTCGTATGGTGGCGGAGTAAGAGGGATTCGAACCCTCGATGCAGGTTGACCCCACATGCTTCCTTAGCAGGGAAGTGCCTTCAGCCTCTCAGCCATTACTCCTAAGGAAGTGCGTAATATACTGGTTTGACTCGGACGTGTCAAGCCGAGCCTGAGGGTATTTTTTAACCGTATGAAATCATTTGTATAAAATATAAAGAAGCGTGAAATTGTAGCCCGTATGCGGCGGCTGGTACAATTCATGCTTGCTTTCAGGATGTGATGAAAATGAATGATTTAATCGTATTGAACAAGCCTTATGGCGTGATTTGCCAGTTTTCGGTGCATGAAAAGTATGGGTGTTTGAAAGATTATGTGGCGCTGCCGGACTTTTATCCGGCGGGGCGTTTAGATACGGACAGCGAGGGTTTGCTGCTGCTGACGAACGACGGGCGTTTGCAGGCGCGGATTGCGGATCCTAAGTTTAAACTGG # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.10,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 359-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797082.1 Neisseria sp. HMSC077D05 Scaffold1660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 358 33 97.0 33 A................................ AAATCGTGCAAACTGACCTTTCCAGCCGCAAAC 292 33 100.0 33 ................................. AAACTGTCGTCACCAGAGACCGCACGCCGTGCA 226 33 97.0 32 A................................ TGCTACCGTCTTCAAACCATCGGCAGATTTCA 161 33 100.0 32 ................................. CCGCAAAAGTGATTTTAGGGTGTGTAAATGAA 96 33 100.0 32 ................................. GCTGTAAATGTCGTCAGGGATTACACAGGCCG 31 31 90.9 0 T..............................-- | ========== ====== ====== ====== ================================= ================================= ================== 6 33 97.5 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTCCGGAAATGCGTTGGGTCCCGTTTCCCCTAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTTTCCGCGTGCCGTTGCCCTGCCGTGTGTACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCTTCAGTTGACTTTCTTGCCGCTTCAAAGCCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTGACTGGATAGCCTCGTCCGTGCCGTCTAT # Right flank : A # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 749-518 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797082.1 Neisseria sp. HMSC077D05 Scaffold1660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 748 33 87.9 33 NNNN............................. CTCCGGAAATGCGTTGGGTCCCGTTTCCCCTAA 682 33 100.0 33 ................................. CGTTTCCGCGTGCCGTTGCCCTGCCGTGTGTAC 616 33 100.0 33 ................................. AGCTTCAGTTGACTTTCTTGCCGCTTCAAAGCC 550 33 90.9 0 T..............................NN | ========== ====== ====== ====== ================================= ================================= ================== 4 33 94.7 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCTGTGTGTTGAAACACATTGCCGCGCGACTCCTGCATAGACAAAGCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTATAATCCTTTTGGTCGAGTTTATCTTGTTTGACGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTTTGCTCCTAGTTGATTGGTTGATGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGCCTCGTCTTTAATAACGTGGACGGGCGATTCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTGACTGGATAGCCTCGTCCGTGCCGTCTATACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAATCGTGCAAACTGACCTTTCCAGCCGCAAACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAACTGTCGTCACCAGAGACCGCACGCCGTGCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTACCGTCTTCAAACCATCGGCAGATTTCACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGCAAAAGTGATTTTAGGGTGTGTAAATGAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTGTAAATGTCGTCAGGGATTACACAGGCCGTCCAGCCGCCTTCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1076-841 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797082.1 Neisseria sp. HMSC077D05 Scaffold1660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1075 33 84.8 36 NNNNN............................ TATAATCCTTTTGGTCGAGTTTATCTTGTTTGACGA 1006 33 100.0 33 ................................. ATTTTTTTGCTCCTAGTTGATTGGTTGATGTTT 940 33 97.0 34 C................................ TTTTGCCTCGTCTTTAATAACGTGGACGGGCGAT 873 33 84.8 0 T............................NNNN | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 91.7 35 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGGCGGCTGTGTGTTGAAACCGCACAAACAATCGTTTATGAGAACACCGAAAAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAACCAGCGCGTCATCCAACGCGCCGTCCAATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGTGTGAAATGCCGCCTGTCGCGGGGTTTTTGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACATTGCCGCGCGACTCCTGCATAGACAAAGCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTCCGGAAATGCGTTGGGTCCCGTTTCCCCTAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTTTCCGCGTGCCGTTGCCCTGCCGTGTGTACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCTTCAGTTGACTTTCTTGCCGCTTCAAAGCCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTGACTGGATAGCCTCGTCCGTGCCGTCTATACCAGCCGCCTTCGGGCG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1753-1555 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797082.1 Neisseria sp. HMSC077D05 Scaffold1660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================================================ ================== 1752 34 91.2 32 NNN............................... CTTTCATTTGTATCTCCAAGAAGAAATTAACT 1686 34 100.0 64 .................................. TTTGGGAATTAAACACGCACTTAATTTAAATCTACTATTTGCCGCTTAAAGACAAACCAACTGA 1588 34 97.1 0 .................................C | ========== ====== ====== ====== ================================== ================================================================ ================== 3 34 96.1 48 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Left flank : NNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTATGATTTTATAAATTTATAAAGGTTTGTCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCCCTGAATGCACTGGAGGTTACCGAATTGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCAATTACGAACTCTATGCCGACCTATCCCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCCCCCTATCTAACAGGGGGGGTCGAGATTCTACTATTTGCCGCTTAAAGACAAACCAACTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACTACCACCAGCAGAGCCACCGCCACCAGCAGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GCACAAACAATCGTTTATGAGAACACCGAAAAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACAACCAGCGCGTCATCCAACGCGCCGTCCAATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGTGTGAAATGCCGCCTGTCGCGGGGTTTTTGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACATTGCCGCGCGACTCCTGCATAGACAAAGCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCT # Questionable array : NO Score: 3.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-1.59, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 5 2173-1911 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797082.1 Neisseria sp. HMSC077D05 Scaffold1660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =============================================================== ================== 2172 34 97.1 31 .................................T TCCCTGAATGCACTGGAGGTTACCGAATTGC 2107 34 100.0 32 .................................. AGCAATTACGAACTCTATGCCGACCTATCCCC 2041 34 100.0 63 .................................. CCCCCCTATCTAACAGGGGGGGTCGAGATTCTACTATTTGCCGCTTAAAGACAAACCAACTGA 1944 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =============================================================== ================== 4 34 99.3 42 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTCGTCTTAATTTAGGGGGTTGCCCGCCGAACATTCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGCCGTCGTTAGGCGGCGTTAATCTTTGTCTCTACTATTTGCCGCTTAAAGACAAACCAACTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCCCCAATGCTTTGGATGTCTCCCTGACCTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTATGATTTTATAAATTTATAAAGGTTTGTC # Right flank : ACTACCACCAGCAGAGCCACCGCCACCAGCAGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTTTCATTTGTATCTCCAAGAAGAAATTAACTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTGGGAATTAAACACGCACTTAATTTAAATCTACTATTTGCCGCTTAAAGACAAACCAACTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCACAAACAATCGTTTATGAGAACACCGAAAAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.74, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 2597-2395 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797082.1 Neisseria sp. HMSC077D05 Scaffold1660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================================================= ================== 2596 34 88.2 35 NNNN.............................. TCGTCTTAATTTAGGGGGTTGCCCGCCGAACATTC 2527 34 97.1 65 .................................T TTGCCGTCGTTAGGCGGCGTTAATCTTTGTCTCTACTATTTGCCGCTTAAAGACAAACCAACTGA 2428 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================================================= ================== 3 34 95.1 50 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC # Left flank : GCGGCTGTGTGTTGAAACCTTATAGGTCATGTGTTTGAAAAGTATGGGTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACATGGGCGTTATCAACCCTGCACAAAGATGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGAATCACGCAGACAGAAGAAAAGATACGCAATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGTGTAGCCTTAAGGGCTTTCTTTTCACCCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATCCCCAATGCTTTGGATGTCTCCCTGACCTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTATGATTTTATAAATTTATAAAGGTTTGTCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCCCTGAATGCACTGGAGGTTACCGAATTGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCAATTACGAACTCTATGCCGACCTATCCCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCCCCCTATCTAACAGGGGGGGTCGAGATTCTACTATTTGCCGCTTAAAGACAAACCAACTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACTACCACCAGCAGAG # Questionable array : NO Score: 3.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-1.69, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 7 2855-2690 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797082.1 Neisseria sp. HMSC077D05 Scaffold1660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================ ================== 2854 34 97.1 32 .................................A GAATCACGCAGACAGAAGAAAAGATACGCAAT 2788 34 100.0 31 .................................. TGTGTAGCCTTAAGGGCTTTCTTTTCACCCT 2723 34 91.2 0 ...............................NNN | ========== ====== ====== ====== ================================== ================================ ================== 3 34 96.1 32 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACT # Left flank : GTAGTCCATGATAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTTAAATAGGAAATACGGATATTCCCCATGATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCCTTATTGGCCGAGTCAGGGGTGGATGTATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCCCTAATGCTTTGGATGTCTCACTGACCTCTACTATTTGCCGCTTAAAGACAAACCAACTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTATAGGTCATGTGTTTGAAAAGTATGGGTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACATGGGCGTTATCAACCCTGCACAAAGATGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTCGTCTTAATTTAGGGGGTTGCCCGCCGAACATTCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGCCGTCGTTAGGCGGCGTTAATCTTTGTCTCTACTATTTGCCGCTTAAAGACAAACCAACTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCCCCAATGCTTTGGATGTCTCCCTGACCTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTATGATTTTATAA # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 3341-3079 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797082.1 Neisseria sp. HMSC077D05 Scaffold1660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================= ================== 3340 33 97.0 32 A................................ GTTAAATAGGAAATACGGATATTCCCCATGAT 3275 33 100.0 33 ................................. TGCCCTTATTGGCCGAGTCAGGGGTGGATGTAT 3209 33 100.0 65 ................................. CATCCCTAATGCTTTGGATGTCTCACTGACCTCTACTATTTGCCGCTTAAAGACAAACCAACTGA 3111 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================================================= ================== 4 33 99.2 44 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAGAAATCATAATCTGAACCTTTTATAATAACATAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTCACTTTGCCCGCACATTTCAGGGCGCGCTCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTTTGCTCCGACGGATAAAGTTCCTCAAAATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACTCTTCCGTATAAGAAAACGGTAGTCCATGATAA # Right flank : CTTATAGGTCATGTGTTTGAAAAGTATGGGTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACATGGGCGTTATCAACCCTGCACAAAGATGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGAATCACGCAGACAGAAGAAAAGATACGCAATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGTGTAGCCTTAAGGGCTTTCTTTTCACCCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCG # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.84, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 3996-3828 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797082.1 Neisseria sp. HMSC077D05 Scaffold1660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 3995 33 100.0 35 ................................. TGAAAAATTGTCGAGAAAGAAAACCCTCAAACCGA 3927 33 97.0 34 A................................ AAGTATTGAAAAGAATCAATCAAGTTAAAGGACT 3860 33 97.0 0 T................................ | ========== ====== ====== ====== ================================= =================================== ================== 3 33 98.0 35 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAACCATGCAGCGTCGTGGCCTCAGTATCAAACCGTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTACGGGAAATACGGGAAACGTGCAGGAAGGCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTTTTGCCACAGCCAGGGCACAGCCAGGGCACAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTATTATTATGAAAACGACTAAACAAATTCAATCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGGATAGCTTGCTTACTGCTATTAGCAGCTTTAACCAGCCGCCTTCAGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCAAGGAAAACCTTGGTCGGCGGCTTCGGCAAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAGAAATCATAATCTGAACCTTTTATAATAACATAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTCACTTTGCCCGCACATTTCAGGGCGCGCTCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTTTGCTCCGACGGATAAAGTTCCTCAAAATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACTCTTCCGTATAAGAAAACGGTAGTCCATGATAAACCAGCCGCCTTC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 4655-4224 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797082.1 Neisseria sp. HMSC077D05 Scaffold1660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 4654 33 90.9 34 NNN.............................. TGGAAGGATACGCAAAAGTACAGGGATTTATACG 4587 33 100.0 35 ................................. TATAGGATATACTGTATGTACTATAATAAACTCTA 4519 33 97.0 32 A................................ CATGCAGCGTCGTGGCCTCAGTATCAAACCGT 4454 33 100.0 33 ................................. CTACGGGAAATACGGGAAACGTGCAGGAAGGCA 4388 33 97.0 33 C................................ CTTTTGCCACAGCCAGGGCACAGCCAGGGCACA 4322 33 100.0 33 ................................. TTATTATTATGAAAACGACTAAACAAATTCAAT 4256 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= =================================== ================== 7 33 97.4 34 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTTGAAACTTTGTGTACTACCTGAAGATTTCGGCCATCATCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTCCCCCCCGTATACTAGCTTTGCCCTGCCTGTAGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTTGTCAGTCATGATGCTGAATACGCTTGAATAACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTTGGTTACTGTTTAAGATTATTTGCTACTACTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTGGATAGCTTGCTTACTGCTATTAGCAGCTTTAACCAGCCGCCTTCAGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCAAGGAAAACCTTGGTCGGCGGCTTCGGCAATCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGAAAAATTGTCGAGAAAGAAAACCCTCAAACCGAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAGTATTGAAAAGAATCAATCAAGTTAAAGGACTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 11 4984-4815 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797082.1 Neisseria sp. HMSC077D05 Scaffold1660, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 4983 34 88.2 34 NNNN.............................. TCCCCCCCGTATACTAGCTTTGCCCTGCCTGTAG 4915 34 100.0 33 .................................. TTGTCAGTCATGATGCTGAATACGCTTGAATAA 4848 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================== ================== 3 34 96.1 34 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACT # Left flank : ACAACCCTGAAACCGACAGCCTGCGCTTTTACCATTTAGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTACAGTTCTCATGAAAATGCGGCAGGGTTAGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGTGGGTATAACAGAAAAGGCTGTGTTATACTCGCATTTCTGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAACTTGATGGAGCAAGGCTTTTAAGAGAGGCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTTGTGTACTACCTGAAGATTTCGGCCATCATCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTGGTTACTGTTTAAGATTATTTGCTACTACTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGGAAGGATACGCAAAAGTACAGGGATTTATACGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTATAGGATATACTGTATGTACTATAATAAACTCTAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCATGCAGCGTCGTGGCCTCAGTATCAAACCGTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTACGGGAAATACGGGAAACGTGCAGGAAGGCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTTTTGCCACAGCCAGGGCACAGCCAGGGCACAGCCAGCCG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.50,-16.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //