Array 1 430616-431620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031515.1 Dickeya zeae strain EC2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 430616 29 100.0 32 ............................. GATCGGTAGAGCTAATGTACGGGAAAGTAGCC 430677 29 100.0 32 ............................. TATGCGGCTCATAAACCCCCATGATCGAGGAC 430738 29 100.0 32 ............................. GTGATGTTATTCAGCATACCGGCGGGCTGCGT 430799 29 100.0 32 ............................. CGACGTATAACTCTCGCCTCCAGTCGTATATG 430860 29 100.0 32 ............................. CAGCTTTTTGCCGCAGTGGGGGCATGCGGTCG 430921 29 100.0 32 ............................. AAATATGACGCTGAGAAGAAAGCCCCGCCAGC 430982 29 100.0 32 ............................. AGACAGGAATACGCGCGCGGAAATCTTCGTCA 431043 29 96.6 32 ............................T GCATCTGTCATGTGCAACGAAATGAATCGATC 431104 29 100.0 32 ............................. GCCGCCTACCCTTTGGCCGACCCGTAATAGTG 431165 29 100.0 32 ............................. GCTAACGAGGTCGCTTCCGCCATCGTGCGTAG 431226 29 100.0 32 ............................. TTTGGGCTATGGTATCCACAATCACTTGCCGG 431287 29 100.0 32 ............................. AGTTAGGTAGTCGGTCATATGTGAACGGCGCA 431348 29 100.0 32 ............................. CCGCTACATTTTCAATAACGTATCCAATGCTC 431409 29 100.0 32 ............................. TCGCCGTTCAGGTACGTGATGAGGGTCTGGGC 431470 29 100.0 32 ............................. TGTCATCAAAATCGAGATCAATACGCACCCGA 431531 29 100.0 32 ............................. CCATGCTGGCATTATTTGTTGATATTAATTCC 431592 29 89.7 0 .........................GG.A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCTGGCGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGACACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTCTGGCTACTGGAAGTGCGCGCCGGGGTTTATGTGGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAACTTGCCGAACAAGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGCGAAAACCGGCGGATGCCGGTGGACCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCCGTTGAAAATCAGTGAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCTGCCTCTAAAAATCCTTATAAAACAGGTATATACTTTTAGA # Right flank : AGAAACAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTTGGACAGTCAGACAGCGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGGCGGCGGGTTTTTTGAGTGCCAGTGTTTTCGCGGCCGGTGCCGATGAAGGGGAAATCATCGGTCGGTTGCCCGCCAGATTGTAAGACCCGCCTCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGGGATTGCGTGGCATTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATTTCGCCGACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAACCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 696398-696975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031515.1 Dickeya zeae strain EC2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 696398 29 100.0 32 ............................. GTGGATGCTTCAGCGATTGCGCCGCCATCGTT 696459 29 100.0 32 ............................. CATTGCTGGGGAAATACGTCGTTACCCAGGAC 696520 29 100.0 32 ............................. CGATGAACGCCGTTCTGTACGCTATCACTGTC 696581 29 100.0 32 ............................. AACACAGAGGTAGCGGCATCGTAAACTGGAAA 696642 29 100.0 32 ............................. CAGCGATCCCCCGATTGCAGAAAAACGTATTA 696703 29 100.0 32 ............................. GTGTTATCGATAAACTGATAGCGGTCTTGGTC 696764 29 100.0 32 ............................. GATGGCTACTTACCCAGTGCAGATAGAAGTGT 696825 29 100.0 32 ............................. CGTGCAGCAATTTTTTTTGGTGCTGTAGGTAG 696886 29 100.0 32 ............................. GATATCGAGTTCGCCTGTGGTGACGGACGTAT 696947 29 82.8 0 ..A.........T............G.GT | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAAAGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGTACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCATTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGTCAGGCGTCTGTCGACATCGGTAGTAATGCCGGTATAAAGCCATCCGCTGCCAGTACGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGGCGTGGGTGAGTGAAATTGCGACATTTATTTATCAATGAGTTAGCGCTCTTTAACAACGTGAAAAAGTTGGTGGAATTTTTCAGGTTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TGAAGGTAATAGCGCGGCACAATCTGTCACGATGCATTAGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGCGTTTAGTTTCTTTTTTATGTGAATAAAACCACAAAAATGGTTGTCATCTCCGGGTGAAATAGTGGTATTCGCCGGAGATGTGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCCGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGACGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGACAGGCCAATAGCCCGGTGGGGAAAACCGCTGCTATCTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGTACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTATGGTGCCGACGAGGTGGACG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3690429-3692257 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031515.1 Dickeya zeae strain EC2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3690429 28 100.0 32 ............................ CAGTGCTGATGTTTGGTCATCAGACGCATATT 3690489 28 100.0 32 ............................ TGATCATCAGCCCAGATATCATTGCCGATTTC 3690549 28 100.0 32 ............................ GTTGAATACACCGCCCGGCGGTAACGCCAGAC 3690609 28 100.0 32 ............................ CTGAGCTAATGAAACTGTTATCGTCATTTCAG 3690669 28 100.0 32 ............................ GCCGAGCAGTTGTCAGAAGACCTCGGCAAAAT 3690729 28 100.0 32 ............................ CCTCCACCCGTTCCAGCAGCCATTAGTGTAAG 3690789 28 100.0 32 ............................ AGTAGTATCAGCGTGAACAGAAAATTGGGCTC 3690849 28 100.0 32 ............................ CGCGCCAGTGGCACAAATCCCGCAATTGCACA 3690909 28 100.0 32 ............................ CATAGGACTAACCATGATTTACCTATATTTAT 3690969 28 100.0 32 ............................ TGAATGTAGCGCTGCGACTGTGTTCCGGGACG 3691029 28 100.0 32 ............................ GCCATTATTTTGTTGCTGAGATTGCACCGCTC 3691089 28 100.0 32 ............................ GATCCAGCAATTGCCACTGATTAAAGGCACAG 3691149 28 100.0 32 ............................ TTGTCGTTGCCATGGCTATAAAAACCTAGTCC 3691209 28 100.0 32 ............................ TGGAACTGCGCGGACTCTGTGCAATCTACCCA 3691269 28 100.0 32 ............................ AGAGCGCAATGCGCAGTTGGTAACGGCATTCC 3691329 28 100.0 32 ............................ TCAACCGTTCCTGGTATGGGACATGGATGCCA 3691389 28 100.0 32 ............................ CAGCTCTCTGGCCAGGAAAAGCAATGCGATAA 3691449 28 89.3 32 ..TC.......T................ TGGAAGAGTTGAACGAACTGGCAGCAAAGTGG 3691509 28 89.3 32 ..TC.......T................ ATTAAGGCAGAAATCACCATTCCTACCCTTGT 3691569 28 89.3 32 ..TC.......T................ ATGCCGCAGCGGTCGCAAATGGTGAGGCTACT 3691629 28 85.7 33 ..TC.......TG............... CGCCTGACCCATCGGAGCTACGGCTATGAGCAT 3691690 28 100.0 32 ............................ TCTATAGAGATAATCATTAGCGACTACAGCTG 3691750 28 100.0 32 ............................ GCACGGCAGGCGATAGCCCACAATGCGGCGGT 3691810 28 96.4 32 ...........T................ GGACGCTGCAATTTCCTGCGCGAACTTATCAG 3691870 28 96.4 32 ...........T................ CGATTGAGTAACGACAGCACAACACCGGGTTA 3691930 28 96.4 32 ...........T................ TGCAACTGGACGATGCTCTCGAACAGCTCGGT 3691990 28 92.9 32 ...........TG............... ATTGAGCCAGACTGTCTTTTCCGCCCGATACG 3692050 28 89.3 32 ..TC.......T................ CAGGAACAGGGCTGGATAGCGCCTCCCGCAGA 3692110 28 89.3 32 ..TC.......T................ TGCGCCGCTTCTATGAACTGTCCGGGAGTAGC 3692170 28 96.4 32 ...........T................ AGTGCTTGAATGCGTGGTTTTTTGGGTTTGAA 3692230 28 78.6 0 ...........T.........GGTC..G | ========== ====== ====== ====== ============================ ================================= ================== 31 28 96.4 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGAAATCCCGCCCATGGCGATATCGCACTGGTCGGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCACTCCACCTTCACGCCAAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCACGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCGCTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACCAATATCGACGTTGACCCTTTTTTTTCGCGCCGTTATAACTCGTTGATTTTCAATGATGACAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCAAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCCCGCACGAAACCACCCACCGCCCCAACATAAATCAGGCCGCAGCAAAATCCTTGCTGTTTACTACTCCACCGTCAACACCGTTACCGCCTTTTTACGCTGTTTGATGGCATAACCTGCCCCCAGCGCCAGCAGCCAGAACGGAATCAACCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGCGGGTAGCCCAGGCTTTTGAAGCGGGTTTCCTGATGCGCACGCTGTTTTGCCTGGCGGAATTTCAAATGGGTAATGCTGATCATCGCCCAGTTGATCACCAGTGCAGACACCACCAGCGCCATCAGCAGTTCAAACGCTTTGCCCGGCATCAGGTAGTTGAGCAGCACACACAACGCGGTCGCCAGCGCCGATACTCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3698516-3697164 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031515.1 Dickeya zeae strain EC2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3698515 28 100.0 32 ............................ ATGGCAGCGGTGTCTGCAAACGCCAGCAAGTC 3698455 28 100.0 33 ............................ GTTTGCCCCGTCAGGCCGCTCCCCGTTACGGCA 3698394 28 100.0 32 ............................ CGCGACTGAACTGGCGTACTGCATGACGCTGC 3698334 28 100.0 32 ............................ TCTACTGTTGATTGAATACTGCGGAAAATGTG 3698274 28 100.0 32 ............................ ATCAGGCTCCGCACCACCGCTACCATCCTGAA 3698214 28 100.0 32 ............................ ATGATGGTTACGTGTTTTGCAATCCTCCATAT 3698154 28 100.0 32 ............................ ACTCACGGGCACAAAGAGATAAAGCCCGTTGC 3698094 28 100.0 32 ............................ ATGGAGGAAAACCGCATGAGCAACCTGCGGAA 3698034 28 100.0 32 ............................ ATCCTCGTTTTTAAAGCGCAGATACTTGCCTA 3697974 28 100.0 32 ............................ AGGTCTGCGGCAATAGCCTTAGCGAAGTCGGC 3697914 28 100.0 32 ............................ GTCAAGGAAGCCGCCAAGGGAACACTGAGCAT 3697854 28 100.0 32 ............................ AGGCGCAGTTATCAAAGCTGTGCGGCTGGGCT 3697794 28 100.0 32 ............................ ACACGTAACTTACTGGTCTGTGCCGTATTTGT 3697734 28 100.0 32 ............................ GTTCCGGCAGTCGCGTACGCGCTCGGCCTGCG 3697674 28 100.0 32 ............................ TCCAGTGTTTTTCCTCGTAGTCATATGGGGGA 3697614 28 100.0 32 ............................ CGAAAGGGGAATAAGTCCGCGGTTTCGTGAAG 3697554 28 89.3 33 ...........CAC.............. AGCCACCGGATCCATGATGACTGCGCTATTCCC 3697493 28 89.3 32 ...........CAC.............. AACTGCTCAGCAATCTGCGCAGGTTTCATGCC 3697433 28 100.0 32 ............................ TCTTTTACGTCTTGCCAGTAGTCGGTCTGCGA 3697373 28 92.9 33 ...........CA............... TTATCTGCTCGGACGCAGAAAACAGGCTCACTC 3697312 28 89.3 32 ...........CAC.............. TCCATCCGAATACGGTCGCGGACGTTGAACAG 3697252 28 92.9 32 ...........CA............... ACTTTAGCCATATCGGTTTATCTCCAGATAAT 3697192 27 82.1 0 ............AC.........-..CG | GG [3697169] ========== ====== ====== ====== ============================ ================================= ================== 23 28 97.2 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CAGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACTGAGGCACAGCCGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAACGCTGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGCCGAATGAGCGCGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCACTTCGCTGCCGTATCTACCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTGCTGTTTGTCGAGCACGGCCCGCTACAGGACAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAGGGTTTTCCCGGAAAAACGGCGATTTTTCTTTAACAATCAGGCGATAAGCGATTGTTCGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGTCGACTTCGCCGGATGAGCGGCAGGGAAGCCGCGAAAGCCTGTGCCGTGTGGGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAACCACGTCACAGGCGGTCCGAACAGCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATTAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCACTCACTTGCCTGATATATATCGCTAATCAATAACAAAACCCCTCGCTGTTTTGCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCAACTGTTACCAGCTGGGGGAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACATTGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3707494-3709328 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031515.1 Dickeya zeae strain EC2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3707494 28 100.0 33 ............................ TATCCAGACAACGTCTGCATGGCTATTCTAGAA 3707555 28 100.0 32 ............................ TGTCACCCTCCCCAGCCAAACCGCAGATGGTT 3707615 28 100.0 32 ............................ TAGCACTGCATTTTCTTGTGCGGCTAACTGAG 3707675 28 100.0 32 ............................ AGCAACTGGCTGGTCTGCCTGACGTTGACGGT 3707735 28 100.0 32 ............................ GACGCGCCGCCGGATCTAATGGAAGGGATGGA 3707795 28 100.0 32 ............................ GATTCGCTCGATCGGGCGGCCATCACAGGCCA 3707855 28 100.0 32 ............................ GCTTCCGAACGCGCATCCTGATCATCCGCTGC 3707915 28 100.0 32 ............................ AGCAACTGCATCAGCAAAAGCTACAGCAGTAT 3707975 28 100.0 32 ............................ TCAGAACCAGCTGCGAGGTTGCATTGATGGAA 3708035 28 100.0 32 ............................ CGGCATTGCGATTAAGCTCACGCGAAAACATC 3708095 28 100.0 33 ............................ CTGATAACCACAACGGTAAGAGCACCTGCTGGA 3708156 28 100.0 32 ............................ AGGCTAGTTGCGATAGCAATATCAAGACGACC 3708216 28 100.0 32 ............................ TATTCGATGACAACGAATACATCACAGAAAAC 3708276 28 100.0 32 ............................ ATCAAGCAGGACGACAAAAAGTGGCGATACGT 3708336 28 100.0 32 ............................ ACATAGCCAGGTGCAGGCCGCTTGCCAAGAAC 3708396 28 100.0 33 ............................ TGGGGGCGGTAGGCGTACCGGTCAGTGCTGGGC 3708457 28 100.0 32 ............................ AGGAACATCAGGGATTCGGATGGAATCTCCGG 3708517 28 100.0 32 ............................ ATTGAGCATCCCACGCAGTTTGATACGCCTGA 3708577 28 100.0 32 ............................ GGCTACAGTGCCCTCCTGCGCCCGTGCAATTG 3708637 28 100.0 32 ............................ GTATTTCCCTGAAACCATTACCACGACTGGCA 3708697 28 100.0 32 ............................ AAGAAATGCACAAAAGAATTTAGCACGTGCGA 3708757 28 100.0 32 ............................ AGCCAGTGACGCCGATAACGCCACGCTGCTCC 3708817 28 92.9 32 ...........AG............... TTGGCGGTGCGGGTTGTAACTTTCCCATATCC 3708877 28 92.9 33 ...........AG............... GGTGTCTGGTGGTAGGTAGCTGGTCGTAAAAAA 3708938 28 92.9 32 ...........AG............... GGAATACATCGCGGACTGACGGAGACGGGAGG 3708998 28 92.9 32 ...........AG............... GTCCAAAGCGTAATGATTAAGGGAAATAAGCC 3709058 28 92.9 32 ...........AG............... GACACCGCAATCCTGCAACAGCGGATTGGCGC 3709118 28 92.9 32 ...........AG............... CATTAAAAAGGCGGCATCGTATGAGTACACGC 3709178 28 100.0 32 ............................ AGTATTCCGCCTCAGTAGGAGGTGAGATAAAT 3709238 28 100.0 33 ............................ ACAGAGCGGGCAAATGAAGTAGTTGTGGATCGA 3709299 28 78.6 0 ...........C.C.........G.TGG | GG [3709320] ========== ====== ====== ====== ============================ ================================= ================== 31 28 97.9 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GTGACCGAAGTACCGGTACCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCCATCCGCGTAATAAAACGCAGACTAATAATTCATTGAAAAACACGTAATACACTGGAAAGTAACGAGAATCAGCCTAGCACAACCCAAACCAGAAAATGAATGACGCCAGAAACACTTTTCCCGCTTTAATACCCTTTTTTTCAGCCGTCTTTTTCGATACTGAAAAATCAATAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGAGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACAGGCTACA # Right flank : GGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTCCACCACACTACCCTATACACTACGCCCTTAATCCAACAGCGCTTTCCCCGCTTTAGGGATATTCAGTCAAAACGACGCCCAATCACTATTGCTACCCGCCGCCGCCGTGGCACGCTTTTCCGGCAACGCCGGAGATAACACCGCTGGCTGACGGGCTGGTGGCGTTGTGCCGCTGTTGCCCTGCGTCGTCAGGCGAAACGCGCTGACGGCTTCAGCCAGCAAGGAAGCCTGAGACTGCAACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //