Array 1 1314-1913 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAB01000093.1 Cardiobacterium hominis strain 612_ETAR 1110_51846_1091761, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1314 36 100.0 33 .................................... TTTTTAATGGCGTAAATATGGCGTAGATTTTGG 1383 36 100.0 33 .................................... CCATGGGTTTTCTCCTGTTTTAGAAAAAGAAAA 1452 36 100.0 33 .................................... CAATAATCCCAAATTGTTGCGCTTGCGTCATTC 1521 36 94.4 34 ...A......T......................... TCGCATTCCTCGCGCTGCGCGATGCGTACACCTG 1591 36 100.0 34 .................................... TCCAAAACTTCTTCAAAATCACAACCTTCCATAA 1661 36 97.2 41 ...............................A.... CTCGCCGTCCCGACATGGGCGGCTTCTTGCTTGGATTTTGG 1738 36 91.7 34 ...AG...C........................... GGTTGTTGTACGCTCGGTTGTACTCCTTGCGATA 1808 36 97.2 34 ................................A... ACACATTACAAGCGCGCCTGCTGAAAAATGCTTA 1878 36 83.3 0 ...A....C...................T..T.C.T | ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 96.0 35 ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Left flank : GCCGCACTCACCGCCGCCTTGCTCAATGGCGCAGCGCTTGCCGACGCCGTACAAAGCGCGGGCGACTGGGTGGTTGCCGCCCTGCGCTACACCGCCGCAGAAAACAGCGGCGAACTGCGCTTCCCGCCGCAATAACTCGCCCCAAGAACCATAGAAAACAGAAACGGGAAAACCGCCGATAACCCCTCTCCCCTCTCTTGCTGCGCAAACCATACTTGCGCAGCAAGAGAGAAAAGGAGTGCGCGCTAAAACAGCACGTTTTACAGCTTGGCATCCTGAAATACCATAAATAACAACGTTGCAACCACATCCAAAACAAATGACAAACAGCGCTTAGCGATGCATACAAAAAACCAATACCCCTCAAAAAACTGCTAAAATACATCCCATGATAATCCCCAACAAAATCCGAATGATAAAGCCCAACTTTTTGCAGATTACAAAAGTTGGAAAACCCCCTTCTAATAACCTAAAAACAAAAAAGAAAAACACACCTCGCT # Right flank : TAAAAAATGCCGACATTCGTCGGCATTTTTTTCGGTGATGCGCGCGTTGGATGCGCGGCGGGGTTTCGCAGGCGGGTTCAGGTCATCTCCCTGCCGCTTCCGCCTGCGCTTCCAACGCGCTTTCTTTGACGATGCACATCGGTTTGCCGCTGACCGGGCAGGTGTACGGCGCGGCATTGACCGCGAAGACGTCGGCGAGCAGCGCCGGGGTCAGCACTTCCGCCGGACTGCCTTCGGCGACGAGTTGCCCCGCTTTCAGCACGATGAGGTGGTCGCAGTAGCGCGCCGCCTGGTTCAGGTCGTGCAGGACGGTGATGACGGTCGTCCCTTTTTCTTGTTGGACGCGCATCATGTCCATCAGCGCGATTTGGTGGTTGAGGTCGAGGTAGGTGGTCGGTTCGTCCAGAAGCAGGTACGGCGTTTCCTGCGCCAAGGTCATGGCGAGGAAGGCGCGCTGTTGTTGGCCGCCGGAGAGTTCGTCCACGCGCTTGTCGGCGAGC # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA // Array 1 2083-381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAB01000191.1 Cardiobacterium hominis strain 612_ETAR 1408_45610_1001442_196+,...,864_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2082 36 100.0 33 .................................... ATGAAAGGGCGTAATGCCCTGATGTACCAGCTT 2013 36 100.0 35 .................................... TAACTCATGTTAGTGATGCCATATCCAAGACTTTC 1942 36 100.0 33 .................................... TTCTGCCACCTGATAAATGCTTTCGGCGGAAAT 1873 36 97.2 34 ...............A.................... GGGTAAGAATTCCGGACTTGAGTACTCATTGTTG 1803 36 100.0 32 .................................... ATACAGGTGATAGCTCGTTCTACTGAATAAGC 1735 36 100.0 34 .................................... TTACGTGATTCCCAGTTGTTATAGATTGCACTCG 1665 36 97.2 32 ..................C................. ATACGGCCGGTTGGTGTGGATTTAGATAGGGA 1597 36 100.0 33 .................................... TTGTTGGCTTCATCATAAAAATCCAACAATTGC 1528 36 100.0 33 .................................... CTCTTTTCTCTTTTTCTTTCTCTTCCTTGTACC 1459 36 100.0 33 .................................... ATTAATAGCAGCCTGACCAATAGAAATCTTCAT 1390 36 100.0 34 .................................... CTACAAACACCGGGCGGGGTGTATTCTCGAAATC 1320 36 100.0 33 .................................... CAACTTGCAGTTGGTTTTGATTGCTCATGAAAT 1251 36 97.2 34 .........T.......................... GCGGCTTTGTGATTATTCAAGCACAAGCAATGCT 1181 36 100.0 33 .................................... TGTAGTAGCCGTGGCGGGAACGCATCACTATCA 1112 36 100.0 33 .................................... TACCACCCTTTATGTTCTCAGTCCTTAAACTCC 1043 36 100.0 32 .................................... GTCGGCGAAGACGGTGTACGTCAGCTCATAAT 975 36 100.0 36 .................................... TTCCGCAGCCTTTTTGTTCGGGTCAAATGCGCTTGC 903 36 100.0 34 .................................... TGGGGAAATTGATAATCCAGCGTGGACCATACAG 833 36 100.0 34 .................................... CGCCATAGATTGCTGCGTATCTTTAATAGGATCA 763 36 100.0 33 .................................... ACGCCGCGACTGCCGTAGTATTCGCCGTGGATG 694 36 100.0 32 .................................... CTGCATCGGCGGTGAAATCAAAATATTGTTGA 626 36 100.0 34 .................................... ATTTGGTTTGCGAGAATTATGATTTTTCCCATGA 556 36 97.2 33 .................A.................. AGCGACGCCGCTCAACATTGCCTGTTCACACAT 487 36 100.0 35 .................................... CTATCTATTTAAAAAATATAAATACCGTCTGTTTG 416 36 77.8 0 ...G....AA.T...................TTTT. | ========== ====== ====== ====== ==================================== ==================================== ================== 25 36 98.7 33 ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Left flank : AGAAAAAACCATGCCCGACTACCTTATCGCCTACGACATAGCAGCGCCCAAGCGCCTACAAAAAATCCACAAATGCCTCTGCGAAGAAGCCATCCCGCTACAAAACAGCACCTTCCTCTACCGCGCCAGCCCCGGCCAATTCGAACACCTCTGGCAAGAACTCGCCCTGATGAGCAAAAACGAAGACGACCTGCGAGCCTACCGCCTCCCCGCCGCCAGCCTCTGCTACGAATACCACCCCAAAACCCCGGAAGGCATCTACTGCCTGTAGCCCATTTCCAAAACCACCCGCAAAAAAAACAAAAAAAACGTGCCAGCATAGAAAAAACCAACCAAATACAATAAAATACGCGCGCTATCAGCGAAGCAACGCCACCCCAAACACCCCATGAAAAACCCTAATAAAAACAACGGCCGAAGCGCCAACTTTTTCACAAAAACAAAAGTTGGAAACGCCCTCTGCAACACATTGAAAACAAGGAGAAAAAGCACCCCTGACT # Right flank : CCTTAATCTGCCCGCTTTTGCGGGCTTTTTTATATGACAAATTTGTCGTTGCAGACTGGCTATAGCAGGTGCGTTATTCTTGTATGTTTGTTAAAACACTGTTTAGACATCTTTAAGCAGTGCGTCATAAAATTGTCAAAACAGATAGATTTTTCTTTCTGGCGTAATGTGCCTGCATCGCAACAAGATGATGCAATGATAAGAGCGATGCCTGCTTCCAGTGTAAAGAACCGCCCAGACGTACCGAGTATCTTTTTTGCGCCCGCTGTCCAGAATTCCACCAAACAGCAATGGGTGCTTGTTTGTTTTACTGATACTGGCTGCACTTATAGCGATACACCGAAAGCCTCAGACAAGGCGCGTCGCTGAAGACAGTACGCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 10055-9821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAB01000189.1 Cardiobacterium hominis strain 612_ETAR 1406_23820_590225_1339_,304+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 10054 33 93.9 33 AT............................... GATGTGGTCTATGTCGATCAAGGCAAGCCGGTG 9988 33 100.0 34 ................................. TGCGCCTTGGAGCGGTTGGTCTTGTAGTCGTCCA 9921 33 100.0 35 ................................. GCGGTGGTCATCCTCACCGATGACAACACGCACAG 9853 33 93.9 0 ............C...................T | ========== ====== ====== ====== ================================= =================================== ================== 4 33 96.9 34 CGTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Left flank : GAAGGCATTGACCTCGCCCTGCGCGTCAGCCGCGCGCCGATACCGAGTCTTGTCGTCCGGCGGCTGTTTGAAGTGCGCTTCGCGCTGGTCGCCTCGCCCGCCTACATCCGCCGCCACGGCCTGCCACGAACGCTTGAGGACGCCGCCAGCCGCAGCGCCGTTCTCCCATCGTATGCCGACATCAGCCGCATGGACTGCCGCCGTGGCGACGAAAGCCACACCCTGCACCTGCACAGCGCCCTGCAAAGCAACAGCACCGTCATGCTGCACCAACTGCTGCTTGCGGGCAGCGGCATCGGCTACCTGCCGCTGTGGCTGGCGCAGGACGACCTCACCGCCGGGCGGCTGGTGCGCCTCCTGCCGGACTGGCAGTTACGTAGCATCACCCTGCACGCCGCCTACCCCGACCGCCGTCACCTCAGCGCGAAAATCCGCAGCTTCATTGATTTTCTGGTGGAGAAGGCGAAAACGGTAGAGGGCGATTGAAGTGACAGGGTGTT # Right flank : TTACAAAACTCGCAGCGGTCGCCACGAGCGGAAAATCGCTCCCCACGCCCTAACCGTTCCCCATTTTTGGGCGCTCCGCGCCGTTCAAATGTGCACGGTCTTCGCTACGGAATGTTGTGTGTATAGCGGGCTGTTGTATGGAAATAAATGGGATGGCGATACCGCGCCAACCCGCAACACCGCTTTGGTGGGCGGTTTTTTTCACCGCACCGTTGCGGGTAAAGCAAAACCCGCCGGGTGGCGGGTTTTGGCGAGTGTGTTGTGTGTAGTTATTGGTTCGGTCGTGGCGCGGTGCTTTATTTTTCCAGCAGGGCGCGCAGCATCCACGCGGTTTTTTCGTGGGTTTGCATGCGGGTGGTGAGGAGGTCGGCAGTCGCTTCGTCGTTGGCTTCATCGACTGCCGGGAAGAAGGCGCGGCAGGTGCGCACTACGGTTTCTTGGCCGTCCACCAGTTCCTGGATCATGGTGAGGGCGTCGGTTTTGCCGTTGCATTCTTTGAT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 2 14815-12669 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAB01000189.1 Cardiobacterium hominis strain 612_ETAR 1406_23820_590225_1339_,304+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14814 32 100.0 34 ................................ ACCGTGGCGGCGACGGAAAAATGGAATGACAAAC 14748 32 100.0 33 ................................ TAGGAGCCACCCATGACCGACCCGAAAAACGCC 14683 32 100.0 34 ................................ GTCAAGGGCGTGCTGATAGCCTGCCCGGAAAGCC 14617 32 100.0 33 ................................ TCCACCTGCGGATAATGCGCGGCAACGCAGTGC 14552 32 100.0 35 ................................ TCCATCTCTCCGGCAATGCGCATCGCCTCGGTGAG 14485 32 100.0 34 ................................ GCCTTTAGCGTTGATGATGTAATACATGTGCTAC 14419 32 100.0 35 ................................ GGGTACGGCGGCGTAATCGCCCGCGTTGAGTTTGC 14352 32 100.0 34 ................................ GAGGCCTATGAGATCGGGGCGCTCGACCCAACCG 14286 32 100.0 33 ................................ TTCGGGGGTGACAACCGGCGCGGTGAGGCCGGT 14221 32 100.0 34 ................................ TCTTGCGTGGTGGGCTGTTATCGGCATCTGATAG 14155 32 100.0 32 ................................ ACACCAACGACACAGGCAAAGGCTTCATCCTT 14091 32 100.0 34 ................................ TTCAATGAGCAGAATGCGGGCATTGCCGCTGTAA 14025 32 96.9 34 .......................G........ GCAGCGACCAATCACCAACCTGCACCCGCACCAG 13959 32 100.0 34 ................................ CAGGTTGGCGTGCAGAGGTCGGCAAGCAGCCGCT 13893 32 100.0 34 ................................ CTCGAAGACATCTACGGCAGCACCACCCGCCGCC 13827 32 100.0 35 ................................ TTGGTGTCGCGCAAATGGGCGATACCGTCGCGGAT 13760 32 100.0 35 ................................ CAGGCGACCACATCCTGACGCCCGAACTTCGATAC 13693 32 100.0 34 ................................ CCATCGCTATCTTATGCGAGGGCATGGCAATTTT 13627 32 100.0 34 ................................ GATGCGCCTGTAGGCCTCCATGTAGGTCATGGCA 13561 32 100.0 34 ................................ TCCTGCACATAGTGGCAATCCCGATTATACCGAG 13495 32 100.0 34 ................................ TACAGAAACATATATGCCGAAGATGGTCACGGAA 13429 32 93.8 33 .......T..............A......... CGCATGGCAGGTAGCGCATGAGAACCTGTTAAA 13364 32 100.0 35 ................................ AGCGCGCTGCAAAGCGTGCTGTCTGGCCATATATC 13297 32 100.0 33 ................................ TCCGGCGAGCAGACGATGGTGATCGAACTGGGC 13232 32 96.9 34 ....................T........... CCTACCCGTTTGCAAGCCGAAATCACCCGGCGCT 13166 32 100.0 34 ................................ AATTGAAAATTGTCCCACTAATACAAGAAGACGG 13100 32 100.0 34 ................................ CTTAAAGGGCTGGGCAATTTCCTCTTTGAGGAAA 13034 32 100.0 36 ................................ GTTGGGTGAACGGGTCTCGCTGTTACGCTTACGCAA 12966 32 100.0 34 ................................ CCCTTGCCGCACGCGGAAAACCTGCTCTCCGAAG 12900 32 100.0 33 ................................ TCGTCGATGTTGTATTCGCTGTGCCACTTGGGG 12835 32 100.0 35 ................................ TTCGCCACCCTCGGCGGTTATTTAGCGTCGCTTGT 12768 32 100.0 33 ................................ TCTGCTATTTTCTGTATGCCAAAATCGCAATAC 12703 31 84.4 0 ...........C.T.......-.T....T... | GCTC [12675] ========== ====== ====== ====== ================================ ==================================== ================== 33 32 99.2 34 GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Left flank : CGCAATATCCACCTTTCTTGATGCGATAATGTTGGTATTGATTACTTACGATATTTCCTTTTCAGATACAGCGGGTGCAAAACGTCTGAGACAAATAGCAGCGCATTGTCAAGATTATGGCGTGCGGGTGCAATATTCCATTTTTGAATGCGATGTGAATCCCGAACAATGGGTACGGCTAAAAGATAAATTATTACAAACCTACCAGCCGGAAACTGATAGCTTACGGTTCTATATGCTTGGCAGCAAGGGACGTAATAAAATTGAACATCATGGTGCCAAAGCAGCCCCAGATATATTTCGTGATGCATTGATTATCTAGCGCTAACCATTAGTTCTCATCGAAAGGCGGGAGTATTGGCGGCAGATATAGCGTGCTGAATAGAAATAGATTTAAACACATAGCATACGAATTGCATCTTACCCTACTGTACTTTGTCTGCTTAGCTAGCGAATAGTGCGCTTTCTATGCAGGCTGTACCTGCCATTGCATGATGGCA # Right flank : CCAATAATTTTATTGTGTTCTCCCACTCAATATGAGCATCCTGTCCGCAAGCATTGTGGATAACTTGGTGCATAAACTGCGGGGTATTGTGAAATTCACAGCGCGTGCCACAGCCTGCACATGACGATGCAGCAATATTGGGAAAATAAATTTTATTGGAAAACAGGGTGTTAAGCAGAAAAACCTGTAAGAAAAGCATTTTTTTAGGTTGCAATTCGCCAAGGCGCGCCAGTATGCGATTTGTGCATAACTTTGCTGTTATCGCCATCCCCCGAATGCTTCATACGGCGCTGCGCCGCCTGACCGCCCCCATAAAAGAAAGTAGCGACATTTTTATGGACAACCCGCGCCGTACAACCGCGTGCTGTCTTAGGCAGCGCGCCTTGCCTGAGACTTTCGGTATATCGCTATAGTACGGGCACCCACCGCTGTCGTCGCTGGGTTTTCAGTTGTTATTTCAGTCGTATCCGGCAATGAAAATCTGTTTCTGCGGGAATTCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //