Array 1 937726-930280 **** Predicted by CRISPRDetect 2.4 *** >NC_021353.1 Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 937725 31 100.0 36 ............................... CGTATGTTCTGAGAAGATCCCTTTTTTCTGAAGATG 937658 31 100.0 36 ............................... TTGCTTACTGCTCTTATTTCCTTTTCTGTGAGTGCC 937591 31 100.0 35 ............................... CTAAATCGTCAAACGCTTTTGCCGCTTGCTTAGTG 937525 31 100.0 37 ............................... TTTTAGTATGAAGATCTTGCTTAAGATCGAAGATGCC 937457 31 100.0 37 ............................... ATTTAACATTATTTACTTGCATAAACACACCTCAAAA 937389 31 100.0 37 ............................... GAAGCTTCGAAGAGTGCGGAGTTTCTTAAGTTACTGG 937321 31 100.0 37 ............................... CTATCAGCACCAGATTAGAAGGCTCTCGATATATGTA 937253 31 100.0 36 ............................... TCGCTTTAATCTCGCTCCTTCGTACGCAACGTTATA 937186 31 100.0 36 ............................... TAATTGATCACATCGGGCGTCACACCAGGTGCTTGT 937119 31 100.0 36 ............................... TCAACTCCTTCTCCAAGGCCTTTGATTAAGATCTTG 937052 31 100.0 36 ............................... GAGTGAAACATGGATGACAAAAAGCCGATTGATTTC 936985 31 100.0 37 ............................... AAGTCAACTAATCGTTTCCATCTTGTGTATAAAACGT 936917 31 100.0 37 ............................... CTGTCTATAATGCCGGATGCAATGTTAGCCATTCCTA 936849 31 100.0 36 ............................... TTCTTGTAATGAATCCAGGGGACTGCCCCTTCTTTC 936782 31 100.0 37 ............................... CGTCTATCAATTCCTCATCAGGTTTATAGCCAGGTGC 936714 31 100.0 35 ............................... CCAACACGGTAAGATCTTTTAGTTGTTCTGCCAAG 936648 31 100.0 36 ............................... GACGTTAACCAGAAACGCGCCAATGACGATTGTTAT 936581 31 100.0 37 ............................... TCCGCCAATACACCGTTATTTGACAGTAATCAGCCTG 936513 31 100.0 36 ............................... TAATACGATCACCTCCACAATTTCAGGAGCACTGAA 936446 31 100.0 37 ............................... TTTGCTAGATCATACGCCCATACATTCCCATAGTTCG 936378 31 100.0 35 ............................... ACGACGATTCACAGAATATCACCCACCTCACAGAA 936312 31 100.0 37 ............................... TGATTGGAGCAGTTAACAACCGGCTCAGGAACACCAA 936244 31 100.0 36 ............................... TACTGCACTCCGTCTGTGAACCGCAGATCGGCATCA 936177 31 100.0 37 ............................... TTGATAGGGACGGTGTTTATCGTTCTTATCTTGACAT 936109 31 100.0 38 ............................... TATGTGAAATGTTTTTAGATTGGTATGCTTCCACCAGC 936040 31 100.0 36 ............................... CTACTATAGACTCAACCGGCTGTTAGAGACAGTCAG 935973 31 100.0 36 ............................... ATTCTCAGCGTCTATGATGCACTCACCGCTACCCTG 935906 31 100.0 36 ............................... CCATGCAGCGGCTTGTATTTAGATACCCGTATATGC 935839 31 100.0 36 ............................... TTTACCAAAATTCCGAGGTCTGCCAGCTGGTTAAAT 935772 31 100.0 36 ............................... GCTTCTTTAAGGTTGCATGTAAAGGTTCTTTGGTTG 935705 31 100.0 36 ............................... CGGCATTTGTAGAGCTGGATAAACAACGTATGAATC 935638 31 100.0 36 ............................... CTGGCCTGTCGGAACAGTTCGCGCGCGAATATTGGG 935571 31 100.0 36 ............................... CCTACACGCGCGTAGACATTAGGCGCATGTTCGCGC 935504 31 100.0 37 ............................... TAGGCGTTTTTCTGCTTTAGTGATGTAAACTGTATGC 935436 31 100.0 36 ............................... TGTGAATGTCTCTCTACCGATGTATTCCCACTTAGA 935369 31 100.0 37 ............................... TCGACATCATTATCTTCTATTTCTGTGCCCATTGTGT 935301 31 100.0 36 ............................... ACTCAAACCAGTAGGATCTACAGGCAGAGTAGACGA 935234 31 100.0 36 ............................... GTAAGACTACAGACAAGCAATGATAAGTTTTTTGAA 935167 31 100.0 36 ............................... AGAAGCAACAGACTCTTGGGAATATGAAAGGAAAGA 935100 31 100.0 36 ............................... TTGAGCTGACACATACAAATGATGCAGACTTTGGTA 935033 31 100.0 36 ............................... TTTTGAGACAACAGTAGAAATGCAATATCGCGTAGA 934966 31 100.0 37 ............................... TTAGTCTTTATATATTTGTTTGTTCATTGTTGCTTTC 934898 31 100.0 35 ............................... GTGGGAAGTTCCTAAGGAATACCCCTTGTTATACA 934832 31 100.0 37 ............................... GTGACATGTTCAACCCTGGTCTTGTTCGCATAACGAA 934764 31 100.0 36 ............................... TATCATTCAAATACTTACCCATGGCGAAATCGTATC 934697 31 100.0 36 ............................... TAGGGCCGGATACAATGCCGTCACCACCATATAAGA 934630 31 100.0 37 ............................... GTATTAGACAAGATTAAGAGGGCTTGCAGCCCTCAAA 934562 31 100.0 36 ............................... CCGATGCGTGTGATATATACAAGCGCCTGCCACCCA 934495 31 100.0 37 ............................... TAACTTCACGATTGAGAGGTCTGTAACCCATCAGCAG 934427 31 100.0 36 ............................... AGACTGGGGAAGTCCAGTAAGTTTAAACAATATTGT 934360 31 100.0 39 ............................... CATTTATACCACGACTTCCTTACTTCTAGTTCCATGCCA 934290 31 100.0 37 ............................... CCGATGCGTGTGGTATATACAAGCGCCTGCCACCCAC 934222 31 100.0 36 ............................... GAGCAGAGACGCATGCTCCATTTTTTAGCGAGTCGT 934155 31 100.0 37 ............................... CTGATTTCATCCCCCGCCAGCCTCCTAGCTAATTTAG 934087 31 100.0 39 ............................... ATTTTTATAACTGCTATGAACCCATTGTATGATTTCTTT 934017 31 100.0 36 ............................... ACGCATTCGTCTAATGTTAATCTCGGACCGAGCTTA 933950 31 100.0 37 ............................... CCTAATGTGCAATTAGGGATAACATTGATACTAACAA 933882 31 100.0 36 ............................... GTCAGTTTGCTGATGGTTCTTATGTAGGTACTACAA 933815 31 100.0 36 ............................... ACTCCATTAGTTTAGTTCTTGATGATTTCGAGGTAG 933748 31 100.0 37 ............................... TGACTATTACCGCCGGATCGGCATATCAATGTACAAG 933680 31 100.0 36 ............................... GGCATCTCACACTTATAGATGTATTCTTCATTCGAA 933613 31 100.0 36 ............................... CTAAGGTTGATTATGTTGCCTGTATTGATACCATGG 933546 31 100.0 36 ............................... ATACCTGAAGCTCATGTAGAAGAAGCAACAGACTCA 933479 31 100.0 37 ............................... TGGCTTAAGAGGGTTAACAGTCACACAGTTCGCATTA 933411 31 100.0 36 ............................... GAGTTGAGGGTAGGGTAAGAGTCTGGGCATGGGCAG 933344 31 100.0 36 ............................... CAAGCGATATGGGTATAGGATCACCAGCGTACCGCC 933277 31 100.0 36 ............................... ATAGATCCGTGTGAGGATTGAAATCCCTCTTGAGGT 933210 31 100.0 40 ............................... CTGACCAGTCAACCGTTAACATTGAGATGACAAGAATAAA 933139 31 100.0 37 ............................... TGTTTCCACTGATTGTATACTGACTGTCAGGCAAAAA 933071 31 100.0 36 ............................... ATTATCCTGATGTAACTGACCAATTCTCCAGTATAA 933004 31 100.0 36 ............................... TAAAACTGCCCGTGACCGTCAATCAAGCTTTCTACA 932937 31 100.0 38 ............................... TTTGATCTTATACGTTGTCTCTTTTAACAAGTATCCAC 932868 31 100.0 36 ............................... CCGGAGATACTGGCTTCCTGTTTAATTTTGTTCCAA 932801 31 100.0 36 ............................... AATACATAAATGAAGATACATTAATATCTTCAAGCA 932734 31 100.0 36 ............................... TTTCAACAAGCTCACGTCCGTTGTAATACACGCTCA 932667 31 100.0 36 ............................... TAAAAATATTGGTAATGTCAAATACATATCCTAAAG 932600 31 100.0 36 ............................... GGCAACATAATCAACCTTAGGCTCGCTTCCTAGTTC 932533 31 100.0 36 ............................... TGGTCACTAGCTGGCAGAGGGGTATTTAATTTCCTC 932466 31 100.0 38 ............................... GCTGACATTAGACGAGTGCGTGCCTATTTGGAACAATG 932397 31 100.0 36 ............................... AGTTTGAATAAAATCGTAATAGTATCTAGTTCTTAA 932330 31 100.0 37 ............................... CTACTCACAATTGGCTTAATCCGTTTACTGCCAGTTT 932262 31 100.0 35 ............................... GCGGTTCCTGCTTAATCAGCAGACGCTCAACCAGC 932196 31 100.0 36 ............................... CTTGTTGATATGAGTATCTGTGACGTGATACCCTAA 932129 31 100.0 37 ............................... CAGCAGGTAGAACTACAGTAACAAGATCAACTTCGGG 932061 31 100.0 36 ............................... ATGGAGTTCCTTCTTCGGCTTTTCTTCCTATTGAGT 931994 31 100.0 36 ............................... ACTAAGTGCTGTTGCCAGGGTCTTAACTGAGCATTT 931927 31 100.0 37 ............................... TTGGTGATTCTAACAAGTCCTGGGTTAAATTGGTCTC 931859 31 100.0 37 ............................... CGTACTTTGGATACTCATTTGTAAAAACAAACACTCT 931791 31 100.0 36 ............................... GGAAAAGGGTTTAATCAGACCGTATCAGTCTGACAG 931724 31 100.0 36 ............................... TATTGCTCGTTCTACTCTCGATACTGTTATATCTGC 931657 31 100.0 37 ............................... CTTCCTTTAGAACATAGTCAAAATTTCTTACATGTGT 931589 31 100.0 35 ............................... CTGCCCGTCGATCCCACTGGACTCAGTTATGAGGC 931523 31 100.0 36 ............................... TGTGGTTTGATACGAGATATCTCTATCACTATTTAA 931456 31 100.0 37 ............................... TGAACATTTAATGAAGGCGGATTATTTAGCCTCGAAG 931388 31 100.0 35 ............................... TTAACTCTGCCTTTATCGCCATCTGTATAATAATC 931322 31 100.0 37 ............................... GATGAAGATTATCGACTAAGGGAAGGAGAAGTAGATA 931254 31 100.0 36 ............................... TAACAGTATGGATGGTGAGGTATCGTGGGCTACTAC 931187 31 100.0 36 ............................... ATTTTTCATTGGGGCGGAGCTTGAAGGAAAGAAGGC 931120 31 100.0 37 ............................... GTAGTTTCTCCTTAGATGCTGTTATATCGTACCACTT 931052 31 100.0 37 ............................... AATAGTTATAAACGTATATGCAATGCATGCTCAAAGA 930984 31 100.0 37 ............................... TATCTATGAAACTGTGAAGACGCTATATGATAACTTT 930916 31 100.0 37 ............................... TCGATAGCGCTCCACACGCTCTTGCTCTGTTTCGTTA 930848 31 100.0 36 ............................... TGCTGCTCGTGGTACTCTTGATGCTGCTATATCTCT 930781 31 100.0 36 ............................... CAGGATGGTTTTAGACGTGATGCTGTCCCTTTGTAT 930714 31 100.0 37 ............................... TCATTCCGCGAAGCGGCATTTCGCCTATACACGTCCT 930646 31 100.0 36 ............................... CTACCGCTGAAGTGTTCAAGCCTACCGACTGTTCAA 930579 31 100.0 37 ............................... CGATATAACCCCCTTCGCAGGGAGTGTATCTAATAAC 930511 31 100.0 36 ............................... AAGGGATGCGTATGGCAACGATGCACTTCAGGCAAT 930444 31 100.0 36 ............................... TGATGTAATAATCCCAGTAGTTAATTCAGCTACCTC 930377 31 100.0 36 ............................... TACTATATCTCTTTGGATTCGTTCAGCTCGAGCCGC 930310 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 111 31 100.0 36 ATTTACATTCTAGTTTAGATGGATTTCTAAC # Left flank : TCATCTGCATCTTCCGCGGGTACCAGCTGCAGCATGTAGTCAGTAATGTGAAACTGCCTGCAGATCCATGGCAGGATGTCTTCATTAAAAATTCTCTGGCCTTCTAGAAAAGAACGGTTTGATATTGTCAGCTGCTGCTTTTCATTATTCAATCCTCCAGATGTTGCAACATCACCCTGCCAGAGGGGCATGACACCATACCAGGATCCCATACGTTTTCGTATGTCATCTTGACAAACATAATCCCTTGAAGATGGATAAATTCTTTATATTTGATGACATACAAATCCAAGAGTGAACAATCTAGTATATATGTAGAATACAGGTATGCGGGGACTTTATATCCATATCATCTAGCGAGTATTCAGTTCAGCATACTGCAATATAGGAATCATTGTTTCAAGAAATTGAAGATATAATTTGGAGATATTGTGGTTTTGACTATAGATGATGGATTTCTGACTTGCAGTTTTATATGCAAGAGTCAGCACAGATGACAA # Right flank : CCGCGATCTTTCAATAATATTTCATAATTTGTCTAGTTATTAAAAAGTTTTTCATTAGATACCTTTTTTGTAGAAATGTCGTAGTATTTTGTACGTGATGTATTGAATATAAGTAGAATTTTACCAAAATTTTCTGTCGACCCTTGGATATTTTTGCATAATACCCATCGACAGAATTTACAAAAATTGAGAAGTCTGGTTGAGCTCTTTAGTCAAAAACTCCTTTTGCATCCAGACATCATTTCTTCCTTTAAAGATAATGCATGAGTCTCGATCACATCTTAAATATTTTTTCAGTTCCAATTTCAATTCCATTAATTGAGATTCTGATAATTCGCCTTCGAAAACTGAGTTTTGTATATGTGTTAAATATCGTTTACATATCTTGAAAACAGTTCTCAACACCCGTGCATCTTCTTTGTGCATATATTCATCAGATGAAAGTGATATGTCATAGATTAATACGAGATACAGGTTTACCACCAAATCCTAAATCCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTAGTTTAGATGGATTTCTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 940757-940590 **** Predicted by CRISPRDetect 2.4 *** >NC_021353.1 Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 940756 31 100.0 37 ............................... GCAACGGTAAGCAGGTATGCAAAACGGGCAAAGGATG 940688 31 100.0 37 ............................... GAAATCGAATTAGCAAGAAGTTCTGCATTTTTTGCTA 940620 31 96.8 0 ............................T.. | ========== ====== ====== ====== =============================== ===================================== ================== 3 31 98.9 38 GTTAGAAATCCATCTAAACTAGAATGTAAAT # Left flank : GAAAGCGAGAAAGCCTATCAGTCTTTAGTGGAAAGAATAACCGCCAACGAGTGGAGCCTGAATGATCTAACTTCTTCTGTGCGGGTGCAGCTCATTCAATAAAAGATTAGACGAAGATCTCAAAAAGATGAGATTATTGCAACAATATGTAGTTGGGGTAGATGTCACTTATCGCTATATGTTGAGTACGGAACGGATTCACATCCTGTGAGCAGAGCGAGAATTAAACAATTAGCAGACTGGGCTCACAATAAGCTAAGCATTCCTGTTGAAGACACTGAATATATAGCACAACTGTTGCTAATAAGATTCGCACAAAAAGGACGGATCCCCAACCATTTTTTGGCTTTCAATCGCTGAGATGAAGGTTATGATTGATGCAGGAGAATTCAATGACTCTACAAATCCTCTTGAAAAGATAGCCCAAGAATTAATTATGCATCTGATTGATAAGATCAATACCAATAATATTACTGAGAAAAGCACGTTGGTAAAATCAA # Right flank : CAATAGTACTGGAAGATTTGGCGGAAAATATGATAGCTTTGAATTGAGTTTCTTATGAAACGCAACATGAAACATATAATAACAAAAGTAATTATGATGACAAATTGACAATCATCGAAGTAGTGACGGTGGAATGAAGATGCACTTACAAAAAGATCAGGAGCCTTGGAGACGATTCGTTGATGGCGTCTCTTATGATGTATCAGAAGAGGAAGTGGCTCTGATATTGAAAAGACTCGGATTTTCGTCTATGGAGGAATTTAAAGGTTATGCAGACAGCATAGTAGAATACGAGTGTGGGCGAGATGGCACGAAAATCAAGAATAAGGGCGATGATGAACAACTATTGGAATAATAAGCAAGAGATGGGGGACACATGTGCAAGAGTTCGTGAAGGTAGATATTCCCTATATTTTTCGTCTTCTTGTGTTTGGAATACTGGTTGAAAATCCACCTAAACTAGAATTTAAATTAGCAACAATTATCAACATAATTAGCCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGAAATCCATCTAAACTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //